ISBph3
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010623 | ND | Burkholderia phymatum | Burkholderia phymatum STM815 chromosome 2 |
DNA section
IS Length : 1345 bp
Ends
IR Length : 16
IRL : CAGGCTGCGGAAATACCTGACACAGAGGTCATCGAGACGGATAGCAAAAG
IRR : CAGGCTGCGGAAATACACCTCTCCAGAAGCGACGTCCCTCCGTCCACGCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAATTTATTC | CTAG | TCTGTATCAG | 4 |
DNA sequence
CAGGCTGCGGAAATACCTGACACAGAGGTCATCGAGACGGATAGCAAAAGCGTTGATTTAGGAAGCTCACCCGTCCCCACAGGAGATCATGCGCGGCGTC
GACACGTTCACCGAGAATCTGTTTTCCGTGCGCAAGTTGGACGATTTCGTTCCGACCTCGCATCCGCTGCGCTCGATTCGCGTTATGGCGAACGAAGCGC
TGGCGAAGATGGATCGGATCTTTGCCGGGATGTATGAGGCCGACATCAAGGGAGGCCGGCCGAGCATCGCGCCAGAGAAGCTGTTGCGTGCGATGCTGCT
GCAGGTGCTATACAGCATCCGATCCGAGCGTCAGCTCATGGAGCAAACGCAATACAACCTGCTGTTTCGGTGGTTTATCGGTCTGTCAATGGATGATTCG
GTCTGGGTGCCGACGGTGTTCACGAAGAACCGCGAGCGATTGATCAGGCACGATGCGGTGGTCGAATTTTTCAACGAAGTGCTGTCCATCGCGCAGAAGA
AGAACTGGCTGTCGGGCGAGCACTTTAGCGTCGACGGCACACTGATCCACGCATGGGCAGGACACAAGAGTTTTGTGCGCAAGGACGGTGAAGAGGACAG
GGATAACGACGGTGGCAGCGGCGAGGGAGGCTTCAAGGGTAGCAAGCGAAGCAACGAAACGCACGAGTCGAAGACCGATCCCGATGCACGGCTTTACCGC
AAGGGCAAGACGGCCAGCGAATTGCGTTATATGGGCCACACGCTGACCGACAACCGCCACGGGCTGGTGGTCAACGCCCGCGTGAGTCGCGCTGACGGAC
ACGCGGAACGTGAAGCGGCGAAGGTCATGATCAATGATGCGCGGCAGGCAGCGAACGATGCAGCGGCACAAATCACACTGGGTGCGGACAAGGGTTACGA
CGCACAGGAATTCATCGAAGCTTGCCAGCAGATGAAGGTCACGCCGCACGTGGCACAGAACACCTCCGGCCGCCGTTCGGCGGTGCCCGATGCGATTGCG
CGCAGCGTCGGCTACGCGATATCGCAGCAAAAGCGAAAGCTGATCGAACAAGGTTTTGGATGGGCGAAGACTGTGGGGCGCATGCGTCAAGTGATGGTAC
GCGGGTTGAAGAAAGTCGACCAAATGTTTGTGTTGAACATGGCCGCGTACAACCTCGTGCGCATGCGTTCGCTAGGACAGGCACGCCCGTAATGGCGCAA
ACCGCGAAAATGCGGCGAAAATTGGACCTCAATCGTCGAAAAATGACTCGAATTCCCGGTGAGACTTCGCGATTCAGAAAAATTCAAGCGATAGCCGCGT
GGACGGAGGGACGTCGCTTCTGGAGAGGTGTATTTCCGCAGCCTG
GACACGTTCACCGAGAATCTGTTTTCCGTGCGCAAGTTGGACGATTTCGTTCCGACCTCGCATCCGCTGCGCTCGATTCGCGTTATGGCGAACGAAGCGC
TGGCGAAGATGGATCGGATCTTTGCCGGGATGTATGAGGCCGACATCAAGGGAGGCCGGCCGAGCATCGCGCCAGAGAAGCTGTTGCGTGCGATGCTGCT
GCAGGTGCTATACAGCATCCGATCCGAGCGTCAGCTCATGGAGCAAACGCAATACAACCTGCTGTTTCGGTGGTTTATCGGTCTGTCAATGGATGATTCG
GTCTGGGTGCCGACGGTGTTCACGAAGAACCGCGAGCGATTGATCAGGCACGATGCGGTGGTCGAATTTTTCAACGAAGTGCTGTCCATCGCGCAGAAGA
AGAACTGGCTGTCGGGCGAGCACTTTAGCGTCGACGGCACACTGATCCACGCATGGGCAGGACACAAGAGTTTTGTGCGCAAGGACGGTGAAGAGGACAG
GGATAACGACGGTGGCAGCGGCGAGGGAGGCTTCAAGGGTAGCAAGCGAAGCAACGAAACGCACGAGTCGAAGACCGATCCCGATGCACGGCTTTACCGC
AAGGGCAAGACGGCCAGCGAATTGCGTTATATGGGCCACACGCTGACCGACAACCGCCACGGGCTGGTGGTCAACGCCCGCGTGAGTCGCGCTGACGGAC
ACGCGGAACGTGAAGCGGCGAAGGTCATGATCAATGATGCGCGGCAGGCAGCGAACGATGCAGCGGCACAAATCACACTGGGTGCGGACAAGGGTTACGA
CGCACAGGAATTCATCGAAGCTTGCCAGCAGATGAAGGTCACGCCGCACGTGGCACAGAACACCTCCGGCCGCCGTTCGGCGGTGCCCGATGCGATTGCG
CGCAGCGTCGGCTACGCGATATCGCAGCAAAAGCGAAAGCTGATCGAACAAGGTTTTGGATGGGCGAAGACTGTGGGGCGCATGCGTCAAGTGATGGTAC
GCGGGTTGAAGAAAGTCGACCAAATGTTTGTGTTGAACATGGCCGCGTACAACCTCGTGCGCATGCGTTCGCTAGGACAGGCACGCCCGTAATGGCGCAA
ACCGCGAAAATGCGGCGAAAATTGGACCTCAATCGTCGAAAAATGACTCGAATTCCCGGTGAGACTTCGCGATTCAGAAAAATTCAAGCGATAGCCGCGT
GGACGGAGGGACGTCGCTTCTGGAGAGGTGTATTTCCGCAGCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1104 bp | 367 aa | 89 | 1192 | + | No |
Chemistry : DDE
ORF sequence :
MRGVDTFTENLFSVRKLDDFVPTSHPLRSIRVMANEALAKMDRIFAGMYEADIKGGRPSIAPEKLLRAMLLQVLYSIRSERQLMEQTQYNLLFRWFIGLS
MDDSVWVPTVFTKNRERLIRHDAVVEFFNEVLSIAQKKNWLSGEHFSVDGTLIHAWAGHKSFVRKDGEEDRDNDGGSGEGGFKGSKRSNETHESKTDPDA
RLYRKGKTASELRYMGHTLTDNRHGLVVNARVSRADGHAEREAAKVMINDARQAANDAAAQITLGADKGYDAQEFIEACQQMKVTPHVAQNTSGRRSAVP
DAIARSVGYAISQQKRKLIEQGFGWAKTVGRMRQVMVRGLKKVDQMFVLNMAAYNLVRMRSLGQARP
MDDSVWVPTVFTKNRERLIRHDAVVEFFNEVLSIAQKKNWLSGEHFSVDGTLIHAWAGHKSFVRKDGEEDRDNDGGSGEGGFKGSKRSNETHESKTDPDA
RLYRKGKTASELRYMGHTLTDNRHGLVVNARVSRADGHAEREAAKVMINDARQAANDAAAQITLGADKGYDAQEFIEACQQMKVTPHVAQNTSGRRSAVP
DAIARSVGYAISQQKRKLIEQGFGWAKTVGRMRQVMVRGLKKVDQMFVLNMAAYNLVRMRSLGQARP
Blast result :
Comments
ISBph3 is 92% aa similar to ISBph3.
References
1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Bacher,J., Blanchard,J., Cohan,F., James,E., Lawrence,J., Lizotte-Waniewski,M., Moulin,L., Rainey,P., Riley,M., Souza,V., Wertz,J. and Young,P. (2008) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Bacher,J., Blanchard,J., Cohan,F., James,E., Lawrence,J., Lizotte-Waniewski,M., Moulin,L., Rainey,P., Riley,M., Souza,V., Wertz,J. and Young,P. (2008) Direct submission GenBank.