ISBph3

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010623 ND Burkholderia phymatum
Burkholderia phymatum STM815 chromosome 2
DNA section
IS Length : 1345 bp

Ends


IR Length : 16

IRL : CAGGCTGCGGAAATACCTGACACAGAGGTCATCGAGACGGATAGCAAAAG
IRR : CAGGCTGCGGAAATACACCTCTCCAGAAGCGACGTCCCTCCGTCCACGCG

Insertion site


Left flankDirect repeatRight flankDR Length
CAATTTATTCCTAGTCTGTATCAG4

DNA sequence

CAGGCTGCGGAAATACCTGACACAGAGGTCATCGAGACGGATAGCAAAAGCGTTGATTTAGGAAGCTCACCCGTCCCCACAGGAGATCATGCGCGGCGTC
GACACGTTCACCGAGAATCTGTTTTCCGTGCGCAAGTTGGACGATTTCGTTCCGACCTCGCATCCGCTGCGCTCGATTCGCGTTATGGCGAACGAAGCGC
TGGCGAAGATGGATCGGATCTTTGCCGGGATGTATGAGGCCGACATCAAGGGAGGCCGGCCGAGCATCGCGCCAGAGAAGCTGTTGCGTGCGATGCTGCT
GCAGGTGCTATACAGCATCCGATCCGAGCGTCAGCTCATGGAGCAAACGCAATACAACCTGCTGTTTCGGTGGTTTATCGGTCTGTCAATGGATGATTCG
GTCTGGGTGCCGACGGTGTTCACGAAGAACCGCGAGCGATTGATCAGGCACGATGCGGTGGTCGAATTTTTCAACGAAGTGCTGTCCATCGCGCAGAAGA
AGAACTGGCTGTCGGGCGAGCACTTTAGCGTCGACGGCACACTGATCCACGCATGGGCAGGACACAAGAGTTTTGTGCGCAAGGACGGTGAAGAGGACAG
GGATAACGACGGTGGCAGCGGCGAGGGAGGCTTCAAGGGTAGCAAGCGAAGCAACGAAACGCACGAGTCGAAGACCGATCCCGATGCACGGCTTTACCGC
AAGGGCAAGACGGCCAGCGAATTGCGTTATATGGGCCACACGCTGACCGACAACCGCCACGGGCTGGTGGTCAACGCCCGCGTGAGTCGCGCTGACGGAC
ACGCGGAACGTGAAGCGGCGAAGGTCATGATCAATGATGCGCGGCAGGCAGCGAACGATGCAGCGGCACAAATCACACTGGGTGCGGACAAGGGTTACGA
CGCACAGGAATTCATCGAAGCTTGCCAGCAGATGAAGGTCACGCCGCACGTGGCACAGAACACCTCCGGCCGCCGTTCGGCGGTGCCCGATGCGATTGCG
CGCAGCGTCGGCTACGCGATATCGCAGCAAAAGCGAAAGCTGATCGAACAAGGTTTTGGATGGGCGAAGACTGTGGGGCGCATGCGTCAAGTGATGGTAC
GCGGGTTGAAGAAAGTCGACCAAATGTTTGTGTTGAACATGGCCGCGTACAACCTCGTGCGCATGCGTTCGCTAGGACAGGCACGCCCGTAATGGCGCAA
ACCGCGAAAATGCGGCGAAAATTGGACCTCAATCGTCGAAAAATGACTCGAATTCCCGGTGAGACTTCGCGATTCAGAAAAATTCAAGCGATAGCCGCGT
GGACGGAGGGACGTCGCTTCTGGAGAGGTGTATTTCCGCAGCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1104 bp367 aa891192+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGVDTFTENLFSVRKLDDFVPTSHPLRSIRVMANEALAKMDRIFAGMYEADIKGGRPSIAPEKLLRAMLLQVLYSIRSERQLMEQTQYNLLFRWFIGLS
MDDSVWVPTVFTKNRERLIRHDAVVEFFNEVLSIAQKKNWLSGEHFSVDGTLIHAWAGHKSFVRKDGEEDRDNDGGSGEGGFKGSKRSNETHESKTDPDA
RLYRKGKTASELRYMGHTLTDNRHGLVVNARVSRADGHAEREAAKVMINDARQAANDAAAQITLGADKGYDAQEFIEACQQMKVTPHVAQNTSGRRSAVP
DAIARSVGYAISQQKRKLIEQGFGWAKTVGRMRQVMVRGLKKVDQMFVLNMAAYNLVRMRSLGQARP

 

Blast result :
Comments
ISBph3 is 92% aa similar to ISBph3.
References
1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Bacher,J., Blanchard,J., Cohan,F., James,E., Lawrence,J., Lizotte-Waniewski,M., Moulin,L., Rainey,P., Riley,M., Souza,V., Wertz,J. and Young,P. (2008) Direct submission GenBank.