ISBxe5
- Family IS5
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_007951 | ND | Burkholderia xenovorans | Burkholderia xenovorans LB400 |
DNA section
IS Length : 1335 bp
Ends
IR Length : 15
IRL : CAGGCTGTTGAAATAGCTTCCGCCATGGTCATCGGACCGGGAGCGGTAAA
IRR : CAGGCTGTTGAAATACACTTCACTGACGCAAGGGATGTCTTTCTAAAGAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CATCGCTCTC | CTAG | TGGGGCAATC | 4 |
DNA sequence
CAGGCTGTTGAAATAGCTTCCGCCATGGTCATCGGACCGGGAGCGGTAAACGTTGAAACAAGGAAGCGGACAACACTGAGACCGAAGCGATGCGCGGAGC
GGACGGCTACACCGAGACGATGTTTACGATGGCAAGGCTGGATGACTTCGTGCCGGCCAATCACCCGCTGCGCCCGATTCGCATTTGGCTGAACGACGCA
CTCAAGCGCATGGACCCGGTGTTCGCTCGGATGTACGAGAGCGACGCGAAGGGTGGCCGCCCGAGCATCGCCCCGGAGAAATTGATTCGCGCGTTGCTGT
TGCAGGTGCTGTATTCGATTCGAAGCGAACGCATGCTGATGGAGCAAATCTCCTACAACATGCTGTTTCGCTGGTTCGTCGGCCTTTCGATGGACGATGC
GGTGTGGGACCACTCGACCTTCAGCAAGAACCGTGACCGGCTGCTCGAGCACGACGTCATCGTTGAACTGTTCAACGAGACGGTTGAGTCGGCGCATGCG
CGCGGTTATCTGTCGGGCGAGCATTTCAGCGTGGACGGCACGCTGATTCAGGCGTGGGCCGGGCACAAGAGCTTCGTGAGCAAGAACAAGTCGGATGACG
ATGCGCCGCCTGATGGCGGTGCGCGTGAGCGCGAGAACTGGCACGGTGAGAAGCGTAGCAACGAGACCCACGAATCGAGCACGGACAGCCAGGCGAAGCT
GTTTCGCAAGAGCCGGCGCACTGGTGCGCTGCTTTGCTACATCGGGCACCTGCTGACGGATAACCGGCATGGTCTGGTGGTGAACGCGCAAGTGACGCAG
GCCAGCGGTACGGCCGAACGCGACGCTGCGGCTCAAATGCTCGCGGACGCGGCGCAAGTTGCCAGCGCCCCCATTACTGTGGGGGCGGACAGGAATTACG
ACACGGCGGGCTTCGTGGCGAGTTGCCGCGCCAATCGTGTGACGCCGCACGTGGCGCAAAACGACGGCCGCGCGGGTGGCTCGGCGATTGACGCTCGGAC
GACACGCTGGGCTGGCTACGCCATCAGCCAGCGCAAGCGCAAATGCATTGAGCAGGTCTTCGGCTGGGGTAAGACAGTCGGCCGGATTCGTCAGGCGATG
TATCGCGGCCGCGAGCGGGTCGAGCAGTTGTTCTTGCTGACACAGGCGGCCTACAACCTCACACGCATGCGTACGCTCGCGAACAGAACGGAGTAGAAGT
GCAAATCGGCGAGGAGACGGCATTGGTTCCACCTGAATTAAGGGCGCTCGCTATCAAATCGACACGAACCAAACCGACGCGATGGTTCTTTAGAAAGACA
TCCCTTGCGTCAGTGAAGTGTATTTCAACAGCCTG
GGACGGCTACACCGAGACGATGTTTACGATGGCAAGGCTGGATGACTTCGTGCCGGCCAATCACCCGCTGCGCCCGATTCGCATTTGGCTGAACGACGCA
CTCAAGCGCATGGACCCGGTGTTCGCTCGGATGTACGAGAGCGACGCGAAGGGTGGCCGCCCGAGCATCGCCCCGGAGAAATTGATTCGCGCGTTGCTGT
TGCAGGTGCTGTATTCGATTCGAAGCGAACGCATGCTGATGGAGCAAATCTCCTACAACATGCTGTTTCGCTGGTTCGTCGGCCTTTCGATGGACGATGC
GGTGTGGGACCACTCGACCTTCAGCAAGAACCGTGACCGGCTGCTCGAGCACGACGTCATCGTTGAACTGTTCAACGAGACGGTTGAGTCGGCGCATGCG
CGCGGTTATCTGTCGGGCGAGCATTTCAGCGTGGACGGCACGCTGATTCAGGCGTGGGCCGGGCACAAGAGCTTCGTGAGCAAGAACAAGTCGGATGACG
ATGCGCCGCCTGATGGCGGTGCGCGTGAGCGCGAGAACTGGCACGGTGAGAAGCGTAGCAACGAGACCCACGAATCGAGCACGGACAGCCAGGCGAAGCT
GTTTCGCAAGAGCCGGCGCACTGGTGCGCTGCTTTGCTACATCGGGCACCTGCTGACGGATAACCGGCATGGTCTGGTGGTGAACGCGCAAGTGACGCAG
GCCAGCGGTACGGCCGAACGCGACGCTGCGGCTCAAATGCTCGCGGACGCGGCGCAAGTTGCCAGCGCCCCCATTACTGTGGGGGCGGACAGGAATTACG
ACACGGCGGGCTTCGTGGCGAGTTGCCGCGCCAATCGTGTGACGCCGCACGTGGCGCAAAACGACGGCCGCGCGGGTGGCTCGGCGATTGACGCTCGGAC
GACACGCTGGGCTGGCTACGCCATCAGCCAGCGCAAGCGCAAATGCATTGAGCAGGTCTTCGGCTGGGGTAAGACAGTCGGCCGGATTCGTCAGGCGATG
TATCGCGGCCGCGAGCGGGTCGAGCAGTTGTTCTTGCTGACACAGGCGGCCTACAACCTCACACGCATGCGTACGCTCGCGAACAGAACGGAGTAGAAGT
GCAAATCGGCGAGGAGACGGCATTGGTTCCACCTGAATTAAGGGCGCTCGCTATCAAATCGACACGAACCAAACCGACGCGATGGTTCTTTAGAAAGACA
TCCCTTGCGTCAGTGAAGTGTATTTCAACAGCCTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1107 bp | 368 aa | 90 | 1196 | + | No |
Chemistry : DDE
ORF sequence :
MRGADGYTETMFTMARLDDFVPANHPLRPIRIWLNDALKRMDPVFARMYESDAKGGRPSIAPEKLIRALLLQVLYSIRSERMLMEQISYNMLFRWFVGLS
MDDAVWDHSTFSKNRDRLLEHDVIVELFNETVESAHARGYLSGEHFSVDGTLIQAWAGHKSFVSKNKSDDDAPPDGGARERENWHGEKRSNETHESSTDS
QAKLFRKSRRTGALLCYIGHLLTDNRHGLVVNAQVTQASGTAERDAAAQMLADAAQVASAPITVGADRNYDTAGFVASCRANRVTPHVAQNDGRAGGSAI
DARTTRWAGYAISQRKRKCIEQVFGWGKTVGRIRQAMYRGRERVEQLFLLTQAAYNLTRMRTLANRTE
MDDAVWDHSTFSKNRDRLLEHDVIVELFNETVESAHARGYLSGEHFSVDGTLIQAWAGHKSFVSKNKSDDDAPPDGGARERENWHGEKRSNETHESSTDS
QAKLFRKSRRTGALLCYIGHLLTDNRHGLVVNAQVTQASGTAERDAAAQMLADAAQVASAPITVGADRNYDTAGFVASCRANRVTPHVAQNDGRAGGSAI
DARTTRWAGYAISQRKRKCIEQVFGWGKTVGRIRQAMYRGRERVEQLFLLTQAAYNLTRMRTLANRTE
Blast result :
Comments
ISBxe5 is 78% aa similar to ISThsp18.
References
1] ISfinder annotation (2010)
2] Chain,P.S., Denef,V.J., Konstantinidis,K.T., Vergez,L.M., Agullo,L., Reyes,V.L., Hauser,L., Cordova,M., Gomez,L., Gonzalez,M., Land,M., Lao,V., Larimer,F., LiPuma,J.J., Mahenthiralingam,E., Malfatti,S.A., Marx,C.J., Parnell,J.J., Ramette,A., Richardson,P., Seeger,M., Smith,D., Spilker,T., Sul,W.J., Tsoi,T.V., Ulrich,L.E., Zhulin,I.B. and Tiedje,J.M. (2006) Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15280-15287 .
2] Chain,P.S., Denef,V.J., Konstantinidis,K.T., Vergez,L.M., Agullo,L., Reyes,V.L., Hauser,L., Cordova,M., Gomez,L., Gonzalez,M., Land,M., Lao,V., Larimer,F., LiPuma,J.J., Mahenthiralingam,E., Malfatti,S.A., Marx,C.J., Parnell,J.J., Ramette,A., Richardson,P., Seeger,M., Smith,D., Spilker,T., Sul,W.J., Tsoi,T.V., Ulrich,L.E., Zhulin,I.B. and Tiedje,J.M. (2006) Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15280-15287 .