ISCfl1
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABVL01000015 | ND | Chthoniobacter flavus | Chthoniobacter flavus Ellin428 |
DNA section
IS Length : 1338 bp
Ends
IR Length : 15
IRL : CAGGCTGCTGAAAAAAGAAGGAGTTCGTCAGAAAAAGTACAACCTTACCT
IRR : CAGGCTGCTGAAAAAGCGGGGAATTTTGAGGTGAGGCCACTCAAATTCAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGAGGCTCTT | CTAG | GTTTGCTTGC | 4 |
ATAACAGGCT | CTAA | TTCTCCGAGT | 4 |
GCACTCTCATCTAG | CTAAAGCTTCCCAC | 0 |
DNA sequence
CAGGCTGCTGAAAAAAGAAGGAGTTCGTCAGAAAAAGTACAACCTTACCTGCGCGAGCGGGTTGGTCAGGGATGCGAGGACGTTCCACTGCCCAAACCAG
CCTGATTACTTTGCTCAACGTCGAGAGCCGGATTCCGGAGCGGCATCCGATTCGCGAGATCAAGCGTCTGATCGGGAAAGTCTTTCGGGAATTGGATAGT
TACTTTGATGATCTTTATGCCGAGGGCGGGCGGAGCTCGATTCCGCCGGAGCGCTTGTTGGGCGCCAAAGTATTGATGGCCCTCTATACGGTGCGCAGTG
ACCGGCAGTTTTGTGAGCGGCTGCGCTACGACCTGCTTTTCCAATGGTTTTTGGAGATCAATCCCGATGAAGAGGAAGCGATCTTCGATGCCAGTAGCTT
TAGTAAGAACCAGGAGCGGCTGATCCGGCATGCCGCCGCGGAAATCTTCTTCGCCCGGGTGGTGGAGTTGGCGCGGGCAGGACGCTGGGCGAGCAACGAG
CACTTCAGCGTGGACGGAACCCTGATCGAAGCGTGGGCGAGCATGAAGAGCTTTCGCCCGAAGGACGAGCCGCCGCAGGGCCCTGGAGCAGGCAATCCGT
GGCAGGACTTCCATGGGGAGAAACGCAGCAATGACACCCATCAGAGCACGACCGATCCGCAGGCGAAGTTACTGCGCAAGGGTGCGGGCAAAGAAGCCAA
GCTCTGCTTTGCCGGTCACGCGGTCATGGAGAATCGCACTGGCTTGTGCGTGCACTTCGAGGTCACGCCTTCGGTGGGGGTGACCGAGAGCGGCCAAGCG
CTGGCGCAAATCCGGGAATTGCCCGACCGGGAGTTTGCGCCCCGCACGGTGGGAGCGGACAAAGGTTACCACAGCAAGGACTTCGTCCAGGGTTGCCGCG
AACTGGGGGTGGCCCCGCACGTCGCCGAAGTCAAAGACCGACGGGTTGAAGGCTTTGATGGGCGAACGAAAAAGAAGGGCTACCAAACCAGTCAGCGCAT
CCGCAAACGGATCGAAGAAATCTTCGGCTGGATGAAAACCACCGGCGGGTTCCGCAAGACGCGCTATCGCGGTGTGGAGCGGACCCACTTTTGCGGGCAA
ATGGTGGTAGCCACCTACAACTTACTGCGCCTGGCCAAACTCAACCTGGAAGCGATGACGGCGGCCCCACCACCCACGGAGGTGGGCGCGTGAGCGCCCG
GGTGTGGCGGAGTGCGCCCGGAGTTGGCGCACGGGGCGAGAAAACGCGGTGCACGGCCACCGCAAAACGCAAAAACTAACCTCTTTTCGTGAATTTGAGT
GGCCTCACCTCAAAATTCCCCGCTTTTTCAGCAGCCTG
CCTGATTACTTTGCTCAACGTCGAGAGCCGGATTCCGGAGCGGCATCCGATTCGCGAGATCAAGCGTCTGATCGGGAAAGTCTTTCGGGAATTGGATAGT
TACTTTGATGATCTTTATGCCGAGGGCGGGCGGAGCTCGATTCCGCCGGAGCGCTTGTTGGGCGCCAAAGTATTGATGGCCCTCTATACGGTGCGCAGTG
ACCGGCAGTTTTGTGAGCGGCTGCGCTACGACCTGCTTTTCCAATGGTTTTTGGAGATCAATCCCGATGAAGAGGAAGCGATCTTCGATGCCAGTAGCTT
TAGTAAGAACCAGGAGCGGCTGATCCGGCATGCCGCCGCGGAAATCTTCTTCGCCCGGGTGGTGGAGTTGGCGCGGGCAGGACGCTGGGCGAGCAACGAG
CACTTCAGCGTGGACGGAACCCTGATCGAAGCGTGGGCGAGCATGAAGAGCTTTCGCCCGAAGGACGAGCCGCCGCAGGGCCCTGGAGCAGGCAATCCGT
GGCAGGACTTCCATGGGGAGAAACGCAGCAATGACACCCATCAGAGCACGACCGATCCGCAGGCGAAGTTACTGCGCAAGGGTGCGGGCAAAGAAGCCAA
GCTCTGCTTTGCCGGTCACGCGGTCATGGAGAATCGCACTGGCTTGTGCGTGCACTTCGAGGTCACGCCTTCGGTGGGGGTGACCGAGAGCGGCCAAGCG
CTGGCGCAAATCCGGGAATTGCCCGACCGGGAGTTTGCGCCCCGCACGGTGGGAGCGGACAAAGGTTACCACAGCAAGGACTTCGTCCAGGGTTGCCGCG
AACTGGGGGTGGCCCCGCACGTCGCCGAAGTCAAAGACCGACGGGTTGAAGGCTTTGATGGGCGAACGAAAAAGAAGGGCTACCAAACCAGTCAGCGCAT
CCGCAAACGGATCGAAGAAATCTTCGGCTGGATGAAAACCACCGGCGGGTTCCGCAAGACGCGCTATCGCGGTGTGGAGCGGACCCACTTTTGCGGGCAA
ATGGTGGTAGCCACCTACAACTTACTGCGCCTGGCCAAACTCAACCTGGAAGCGATGACGGCGGCCCCACCACCCACGGAGGTGGGCGCGTGAGCGCCCG
GGTGTGGCGGAGTGCGCCCGGAGTTGGCGCACGGGGCGAGAAAACGCGGTGCACGGCCACCGCAAAACGCAAAAACTAACCTCTTTTCGTGAATTTGAGT
GGCCTCACCTCAAAATTCCCCGCTTTTTCAGCAGCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1122 bp | 373 aa | 72 | 1193 | + | No |
Chemistry : DDE
ORF sequence :
MRGRSTAQTSLITLLNVESRIPERHPIREIKRLIGKVFRELDSYFDDLYAEGGRSSIPPERLLGAKVLMALYTVRSDRQFCERLRYDLLFQWFLEINPDE
EEAIFDASSFSKNQERLIRHAAAEIFFARVVELARAGRWASNEHFSVDGTLIEAWASMKSFRPKDEPPQGPGAGNPWQDFHGEKRSNDTHQSTTDPQAKL
LRKGAGKEAKLCFAGHAVMENRTGLCVHFEVTPSVGVTESGQALAQIRELPDREFAPRTVGADKGYHSKDFVQGCRELGVAPHVAEVKDRRVEGFDGRTK
KKGYQTSQRIRKRIEEIFGWMKTTGGFRKTRYRGVERTHFCGQMVVATYNLLRLAKLNLEAMTAAPPPTEVGA
EEAIFDASSFSKNQERLIRHAAAEIFFARVVELARAGRWASNEHFSVDGTLIEAWASMKSFRPKDEPPQGPGAGNPWQDFHGEKRSNDTHQSTTDPQAKL
LRKGAGKEAKLCFAGHAVMENRTGLCVHFEVTPSVGVTESGQALAQIRELPDREFAPRTVGADKGYHSKDFVQGCRELGVAPHVAEVKDRRVEGFDGRTK
KKGYQTSQRIRKRIEEIFGWMKTTGGFRKTRYRGVERTHFCGQMVVATYNLLRLAKLNLEAMTAAPPPTEVGA
Blast result :
Comments
ISCfl1 is 64% aa similar to ISGlo5.
References
1] ISfinder annotation (2010)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L. and Smidt,H. (2008) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L. and Smidt,H. (2008) Direct submission GenBank.