ISCfl1

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABVL01000015 ND Chthoniobacter flavus
Chthoniobacter flavus Ellin428
DNA section
IS Length : 1338 bp

Ends


IR Length : 15

IRL : CAGGCTGCTGAAAAAAGAAGGAGTTCGTCAGAAAAAGTACAACCTTACCT
IRR : CAGGCTGCTGAAAAAGCGGGGAATTTTGAGGTGAGGCCACTCAAATTCAC

Insertion site


Left flankDirect repeatRight flankDR Length
CGAGGCTCTTCTAGGTTTGCTTGC4
ATAACAGGCTCTAATTCTCCGAGT4
GCACTCTCATCTAGCTAAAGCTTCCCAC0

DNA sequence

CAGGCTGCTGAAAAAAGAAGGAGTTCGTCAGAAAAAGTACAACCTTACCTGCGCGAGCGGGTTGGTCAGGGATGCGAGGACGTTCCACTGCCCAAACCAG
CCTGATTACTTTGCTCAACGTCGAGAGCCGGATTCCGGAGCGGCATCCGATTCGCGAGATCAAGCGTCTGATCGGGAAAGTCTTTCGGGAATTGGATAGT
TACTTTGATGATCTTTATGCCGAGGGCGGGCGGAGCTCGATTCCGCCGGAGCGCTTGTTGGGCGCCAAAGTATTGATGGCCCTCTATACGGTGCGCAGTG
ACCGGCAGTTTTGTGAGCGGCTGCGCTACGACCTGCTTTTCCAATGGTTTTTGGAGATCAATCCCGATGAAGAGGAAGCGATCTTCGATGCCAGTAGCTT
TAGTAAGAACCAGGAGCGGCTGATCCGGCATGCCGCCGCGGAAATCTTCTTCGCCCGGGTGGTGGAGTTGGCGCGGGCAGGACGCTGGGCGAGCAACGAG
CACTTCAGCGTGGACGGAACCCTGATCGAAGCGTGGGCGAGCATGAAGAGCTTTCGCCCGAAGGACGAGCCGCCGCAGGGCCCTGGAGCAGGCAATCCGT
GGCAGGACTTCCATGGGGAGAAACGCAGCAATGACACCCATCAGAGCACGACCGATCCGCAGGCGAAGTTACTGCGCAAGGGTGCGGGCAAAGAAGCCAA
GCTCTGCTTTGCCGGTCACGCGGTCATGGAGAATCGCACTGGCTTGTGCGTGCACTTCGAGGTCACGCCTTCGGTGGGGGTGACCGAGAGCGGCCAAGCG
CTGGCGCAAATCCGGGAATTGCCCGACCGGGAGTTTGCGCCCCGCACGGTGGGAGCGGACAAAGGTTACCACAGCAAGGACTTCGTCCAGGGTTGCCGCG
AACTGGGGGTGGCCCCGCACGTCGCCGAAGTCAAAGACCGACGGGTTGAAGGCTTTGATGGGCGAACGAAAAAGAAGGGCTACCAAACCAGTCAGCGCAT
CCGCAAACGGATCGAAGAAATCTTCGGCTGGATGAAAACCACCGGCGGGTTCCGCAAGACGCGCTATCGCGGTGTGGAGCGGACCCACTTTTGCGGGCAA
ATGGTGGTAGCCACCTACAACTTACTGCGCCTGGCCAAACTCAACCTGGAAGCGATGACGGCGGCCCCACCACCCACGGAGGTGGGCGCGTGAGCGCCCG
GGTGTGGCGGAGTGCGCCCGGAGTTGGCGCACGGGGCGAGAAAACGCGGTGCACGGCCACCGCAAAACGCAAAAACTAACCTCTTTTCGTGAATTTGAGT
GGCCTCACCTCAAAATTCCCCGCTTTTTCAGCAGCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1122 bp373 aa721193+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGRSTAQTSLITLLNVESRIPERHPIREIKRLIGKVFRELDSYFDDLYAEGGRSSIPPERLLGAKVLMALYTVRSDRQFCERLRYDLLFQWFLEINPDE
EEAIFDASSFSKNQERLIRHAAAEIFFARVVELARAGRWASNEHFSVDGTLIEAWASMKSFRPKDEPPQGPGAGNPWQDFHGEKRSNDTHQSTTDPQAKL
LRKGAGKEAKLCFAGHAVMENRTGLCVHFEVTPSVGVTESGQALAQIRELPDREFAPRTVGADKGYHSKDFVQGCRELGVAPHVAEVKDRRVEGFDGRTK
KKGYQTSQRIRKRIEEIFGWMKTTGGFRKTRYRGVERTHFCGQMVVATYNLLRLAKLNLEAMTAAPPPTEVGA

 

Blast result :
Comments
ISCfl1 is 64% aa similar to ISGlo5.
References
1] ISfinder annotation (2010)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L. and Smidt,H. (2008) Direct submission GenBank.