ISButh5

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABBM01001167 ND Burkholderia thailandensis
Burkholderia thailandensis MSMB43
DNA section
IS Length : 1350 bp

Ends


IR Length : 13

IRL : CAGGCTGTTGAAATTGGATACGGTGTAAACGGGCGCTGCGGGCGGTGCGT
IRR : CAGGCTGTTGAAAAGCGCCTCGTTTTGATGGCTGGGGCACTGTTTAAAAG

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNNNNNNCTA0

DNA sequence

CAGGCTGTTGAAATTGGATACGGTGTAAACGGGCGCTGCGGGCGGTGCGTTAGAGATATCGTGTTCATGATCTTGGGCAGACGAGAGCGATGCGCGGAAT
GGACGAGATGCAAGAACCGCTGTTCACGACGGTGAAGCTGGAAGACTTCGTGCCGGCCGATCACCCGCTGCGGCCGCTTCGGCTGCTGGTCAATCAGGCG
TTGAAGCGGCTCAACGGGCTGTTCAGCACGATCTATGCAGACAGCGGTCGAGCCTCGATTGCGCCTGAGAAGCTGCTGCGTGCGTTGCTGCTGCAAGTGT
TTTATTCGGTGCGCAGCGAGCGCATGCTGATGGAGCAGATGCGCTACAACTTGCTGTTTCGTTGGTTCGTCGGGTTGGCGATCGAAGACGCCGTCTGGGA
CCACTCGGTGTTCTCGAAGAACCGCGATCGTCTGCTCGAGCACGAAGTGGTCGAAGCGTTCTTTACCGAAGTCATGAGCTTGGCCGACAAGCAAGGGCTG
CTGTCCAGAGAACACTTCTCGGTCGATGGCACGCTGATCCAGGCGTGGGCCAGCCACAAGAGCTTCCGGCCCAAGGACGGTTCGGACGATCCGCCGGCCG
GTGGCGGCCGCAATGTCGACACCGACTGGAAGGGCAAGCGGCGCAGCAACGAGACTCACGAGTCGAGCACCGATCCGGATGCGCGGCTGTTCAGGAAGAG
CAAAGGCACGCCGTCCATCCTGTGTTACCAGGGGCACATCCTGATGGAGAACCGTTCGGGTTTGGTGGTTGGCGCGGTGGTCAGCCATGCCGATGGCTTT
GGCGAACGCGCGAGCGCATTGCGCCTGCTCGATTGCGTGCCAGGCCGTCATGCCAAGACGCTTGGGGCCGACAAGGGTTATGACATGCGCGACTTTGTGC
GGGATTGTCGTGCGCGCAAGGTGACGCCGCATGTCGCACGCAACGACGCGCATCAGGGCGGTAGCGCGATCGACGGGCGCACGTCGCGGCACGTCGGCTA
CGGCATCAGCCAGGTGATTCGCAAACGCATCGAGGAGCACTTCGGCTGGGGCAAGACCGTCGGCAGGATTCGACAGACCGTGTATCGCGGCATCAAGCGA
GTCGACCAGCACTTCAAGTTGACGATGCTGGCGAGCAACCTGACTCGAATGGCCCGAATACTGGCGGCGGTGCCGCAGGGAGCAGTGAAATGAGCCGCCC
AAACGCGACCGTCGCGCGGCAACGCGCCTGCTGGCCCGCTCGCCAGCAGGGCAGCCGCGACGATTTATCCGCAACTCAGCAGCCAATCGCATACGAAACC
CTTTTAAACAGTGCCCCAGCCATCAAAACGAGGCGCTTTTCAACAGCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1095 bp364 aa991193+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDEMQEPLFTTVKLEDFVPADHPLRPLRLLVNQALKRLNGLFSTIYADSGRASIAPEKLLRALLLQVFYSVRSERMLMEQMRYNLLFRWFVGLAIEDAVW
DHSVFSKNRDRLLEHEVVEAFFTEVMSLADKQGLLSREHFSVDGTLIQAWASHKSFRPKDGSDDPPAGGGRNVDTDWKGKRRSNETHESSTDPDARLFRK
SKGTPSILCYQGHILMENRSGLVVGAVVSHADGFGERASALRLLDCVPGRHAKTLGADKGYDMRDFVRDCRARKVTPHVARNDAHQGGSAIDGRTSRHVG
YGISQVIRKRIEEHFGWGKTVGRIRQTVYRGIKRVDQHFKLTMLASNLTRMARILAAVPQGAVK

 

Blast result :
Comments
ISButh5 is 93% aa similar to ISBusp2.
References
1] ISfinder annotation (2010)
2] Read,T.D., Lentz,S.M., Nolan,N.M., Willner,K.M., Akmal,A., Inglis,T., Merritt,A., Lum,G., Miralles,I., Levy,A., Gee,J., Glass,M. and Wilkins,P. (2007) Direct submission GenBank.