ISButh5
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABBM01001167 | ND | Burkholderia thailandensis | Burkholderia thailandensis MSMB43 |
DNA section
IS Length : 1350 bp
Ends
IR Length : 13
IRL : CAGGCTGTTGAAATTGGATACGGTGTAAACGGGCGCTGCGGGCGGTGCGT
IRR : CAGGCTGTTGAAAAGCGCCTCGTTTTGATGGCTGGGGCACTGTTTAAAAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | CTA | 0 |
DNA sequence
CAGGCTGTTGAAATTGGATACGGTGTAAACGGGCGCTGCGGGCGGTGCGTTAGAGATATCGTGTTCATGATCTTGGGCAGACGAGAGCGATGCGCGGAAT
GGACGAGATGCAAGAACCGCTGTTCACGACGGTGAAGCTGGAAGACTTCGTGCCGGCCGATCACCCGCTGCGGCCGCTTCGGCTGCTGGTCAATCAGGCG
TTGAAGCGGCTCAACGGGCTGTTCAGCACGATCTATGCAGACAGCGGTCGAGCCTCGATTGCGCCTGAGAAGCTGCTGCGTGCGTTGCTGCTGCAAGTGT
TTTATTCGGTGCGCAGCGAGCGCATGCTGATGGAGCAGATGCGCTACAACTTGCTGTTTCGTTGGTTCGTCGGGTTGGCGATCGAAGACGCCGTCTGGGA
CCACTCGGTGTTCTCGAAGAACCGCGATCGTCTGCTCGAGCACGAAGTGGTCGAAGCGTTCTTTACCGAAGTCATGAGCTTGGCCGACAAGCAAGGGCTG
CTGTCCAGAGAACACTTCTCGGTCGATGGCACGCTGATCCAGGCGTGGGCCAGCCACAAGAGCTTCCGGCCCAAGGACGGTTCGGACGATCCGCCGGCCG
GTGGCGGCCGCAATGTCGACACCGACTGGAAGGGCAAGCGGCGCAGCAACGAGACTCACGAGTCGAGCACCGATCCGGATGCGCGGCTGTTCAGGAAGAG
CAAAGGCACGCCGTCCATCCTGTGTTACCAGGGGCACATCCTGATGGAGAACCGTTCGGGTTTGGTGGTTGGCGCGGTGGTCAGCCATGCCGATGGCTTT
GGCGAACGCGCGAGCGCATTGCGCCTGCTCGATTGCGTGCCAGGCCGTCATGCCAAGACGCTTGGGGCCGACAAGGGTTATGACATGCGCGACTTTGTGC
GGGATTGTCGTGCGCGCAAGGTGACGCCGCATGTCGCACGCAACGACGCGCATCAGGGCGGTAGCGCGATCGACGGGCGCACGTCGCGGCACGTCGGCTA
CGGCATCAGCCAGGTGATTCGCAAACGCATCGAGGAGCACTTCGGCTGGGGCAAGACCGTCGGCAGGATTCGACAGACCGTGTATCGCGGCATCAAGCGA
GTCGACCAGCACTTCAAGTTGACGATGCTGGCGAGCAACCTGACTCGAATGGCCCGAATACTGGCGGCGGTGCCGCAGGGAGCAGTGAAATGAGCCGCCC
AAACGCGACCGTCGCGCGGCAACGCGCCTGCTGGCCCGCTCGCCAGCAGGGCAGCCGCGACGATTTATCCGCAACTCAGCAGCCAATCGCATACGAAACC
CTTTTAAACAGTGCCCCAGCCATCAAAACGAGGCGCTTTTCAACAGCCTG
GGACGAGATGCAAGAACCGCTGTTCACGACGGTGAAGCTGGAAGACTTCGTGCCGGCCGATCACCCGCTGCGGCCGCTTCGGCTGCTGGTCAATCAGGCG
TTGAAGCGGCTCAACGGGCTGTTCAGCACGATCTATGCAGACAGCGGTCGAGCCTCGATTGCGCCTGAGAAGCTGCTGCGTGCGTTGCTGCTGCAAGTGT
TTTATTCGGTGCGCAGCGAGCGCATGCTGATGGAGCAGATGCGCTACAACTTGCTGTTTCGTTGGTTCGTCGGGTTGGCGATCGAAGACGCCGTCTGGGA
CCACTCGGTGTTCTCGAAGAACCGCGATCGTCTGCTCGAGCACGAAGTGGTCGAAGCGTTCTTTACCGAAGTCATGAGCTTGGCCGACAAGCAAGGGCTG
CTGTCCAGAGAACACTTCTCGGTCGATGGCACGCTGATCCAGGCGTGGGCCAGCCACAAGAGCTTCCGGCCCAAGGACGGTTCGGACGATCCGCCGGCCG
GTGGCGGCCGCAATGTCGACACCGACTGGAAGGGCAAGCGGCGCAGCAACGAGACTCACGAGTCGAGCACCGATCCGGATGCGCGGCTGTTCAGGAAGAG
CAAAGGCACGCCGTCCATCCTGTGTTACCAGGGGCACATCCTGATGGAGAACCGTTCGGGTTTGGTGGTTGGCGCGGTGGTCAGCCATGCCGATGGCTTT
GGCGAACGCGCGAGCGCATTGCGCCTGCTCGATTGCGTGCCAGGCCGTCATGCCAAGACGCTTGGGGCCGACAAGGGTTATGACATGCGCGACTTTGTGC
GGGATTGTCGTGCGCGCAAGGTGACGCCGCATGTCGCACGCAACGACGCGCATCAGGGCGGTAGCGCGATCGACGGGCGCACGTCGCGGCACGTCGGCTA
CGGCATCAGCCAGGTGATTCGCAAACGCATCGAGGAGCACTTCGGCTGGGGCAAGACCGTCGGCAGGATTCGACAGACCGTGTATCGCGGCATCAAGCGA
GTCGACCAGCACTTCAAGTTGACGATGCTGGCGAGCAACCTGACTCGAATGGCCCGAATACTGGCGGCGGTGCCGCAGGGAGCAGTGAAATGAGCCGCCC
AAACGCGACCGTCGCGCGGCAACGCGCCTGCTGGCCCGCTCGCCAGCAGGGCAGCCGCGACGATTTATCCGCAACTCAGCAGCCAATCGCATACGAAACC
CTTTTAAACAGTGCCCCAGCCATCAAAACGAGGCGCTTTTCAACAGCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1095 bp | 364 aa | 99 | 1193 | + | No |
Chemistry : DDE
ORF sequence :
MDEMQEPLFTTVKLEDFVPADHPLRPLRLLVNQALKRLNGLFSTIYADSGRASIAPEKLLRALLLQVFYSVRSERMLMEQMRYNLLFRWFVGLAIEDAVW
DHSVFSKNRDRLLEHEVVEAFFTEVMSLADKQGLLSREHFSVDGTLIQAWASHKSFRPKDGSDDPPAGGGRNVDTDWKGKRRSNETHESSTDPDARLFRK
SKGTPSILCYQGHILMENRSGLVVGAVVSHADGFGERASALRLLDCVPGRHAKTLGADKGYDMRDFVRDCRARKVTPHVARNDAHQGGSAIDGRTSRHVG
YGISQVIRKRIEEHFGWGKTVGRIRQTVYRGIKRVDQHFKLTMLASNLTRMARILAAVPQGAVK
DHSVFSKNRDRLLEHEVVEAFFTEVMSLADKQGLLSREHFSVDGTLIQAWASHKSFRPKDGSDDPPAGGGRNVDTDWKGKRRSNETHESSTDPDARLFRK
SKGTPSILCYQGHILMENRSGLVVGAVVSHADGFGERASALRLLDCVPGRHAKTLGADKGYDMRDFVRDCRARKVTPHVARNDAHQGGSAIDGRTSRHVG
YGISQVIRKRIEEHFGWGKTVGRIRQTVYRGIKRVDQHFKLTMLASNLTRMARILAAVPQGAVK
Blast result :
Comments
ISButh5 is 93% aa similar to ISBusp2.
References
1] ISfinder annotation (2010)
2] Read,T.D., Lentz,S.M., Nolan,N.M., Willner,K.M., Akmal,A., Inglis,T., Merritt,A., Lum,G., Miralles,I., Levy,A., Gee,J., Glass,M. and Wilkins,P. (2007) Direct submission GenBank.
2] Read,T.D., Lentz,S.M., Nolan,N.M., Willner,K.M., Akmal,A., Inglis,T., Merritt,A., Lum,G., Miralles,I., Levy,A., Gee,J., Glass,M. and Wilkins,P. (2007) Direct submission GenBank.