ISBph2

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010625 ND Burkholderia phymatum
Burkholderia phymatum STM815
DNA section
IS Length : 1335 bp

Ends


IR Length : 15/16

IRL : CAGGCTGTTGAAATACCTCCAGCGCACGTCATCCGCGCGGGAGGGGTAAA
IRR : CAGGCTGTTGAAAAACACCTTGCCGGCTTTGAGCACTTCGTTTCATTGAG

Insertion site


Left flankDirect repeatRight flankDR Length
AGCATGTGTTCTAGGGTCTGTTCA4
GCGTGGAAGTTTAGTACTACTGTG4

DNA sequence

CAGGCTGTTGAAATACCTCCAGCGCACGTCATCCGCGCGGGAGGGGTAAACGTTGAAATGAAGGATCGAACAACACTGAGACGGAAGCGATGCGCGGAGC
GGACGGCTATACAGAATCGATGTTCACGATGTCCAGGCTCGATGACTTCGTTCCGGCCAATCACCCGTTGCGACCGATTCGGCTGTGGTTGAACGAAGCG
CTCACTCGCATGGATTCGGTCTTTTCGCGCATGTACGAGAGCGACGCGAAGGGCGGACGCCCAAGTATCGCGCCGGAGAAGCTGATTCGCGCACTGCTGT
TGCAAGTGCTGTATTCGATTCGCAGCGAACGCATGCTGATGGAGCAAATCTCCTACAACATGCTGTTCCGCTGGTTCGTCGGACTGGCGATGGACGATGT
TGTTTGGGACCACTCCACCTTCAGTAAGAACCGCGACCGACTGATGGCTCATGATGTCATGGTCAGTCTGTTCAATGAGACGGTCGAGACAGCACGCGTG
CGTGGCCACCTGTCGGGCGAGCATTTCAGCGTCGACGGCACACTCATTCAGGCTTGGGCCGGACACAAGAGCTTTGTACCGAAGGTGAAGTCGGATGACG
ACTCGCCGCCTGACGGCGGTGCCGGCTCTCACGAGAACTGGCATGGCGAGAAGCGTAGCAACGACACGCATGAGTCCAGCACGGACAGTCAGGCCCGGCT
GTTTCGCAAGAGTCGTGGCACGGGCGCGATGCTTTGCTACATGGGGCACGTGCTGACTGATAACCGACACGGCCTCGTGGTGAACGCACAGGTGACGCAG
GCTAATGGCACAGCCGAGCGGGACACAGCAGCCGAAATGCTTGCGGACGCCGCGCAGTTTGCCGATACGTCGATTACGGTAGGTGCAGACAAGAACTACG
ACACGGCCGGCTTCGTGGCGACGTGCCGCGCACACGGCGTGACGCCACATGTTGCGCAAAACAATGGCCGCGCGGGTGGCTCCGCCATCGACGGACGCAC
AACGCGCTGGGCCGGCTATGCGGTCAGTCAGCGCAAGCGCAAATGCATTGAGCAGGTCTTTGGCTGGAGCAAGACGGTTGGAAGAATTCGGCAGGCGATG
TTTCGGGGCCTGCAACGAGTTGACCAGATCTTCCTGTTGACTCAGGCGGCCTACAACCTGACTCGCATGCGCACGCTCGCCGCGAAAGCGGCATAGGAGC
GACAGGCAGCGAGGGAATGGCATTGCATCCACTTGAATGAAAGGCTTCGAGCATTAAACCGACATCAATCAAATCGGCGCAGCGACTCAATGAAACGAAG
TGCTCAAAGCCGGCAAGGTGTTTTTCAACAGCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1107 bp368 aa901196+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGADGYTESMFTMSRLDDFVPANHPLRPIRLWLNEALTRMDSVFSRMYESDAKGGRPSIAPEKLIRALLLQVLYSIRSERMLMEQISYNMLFRWFVGLA
MDDVVWDHSTFSKNRDRLMAHDVMVSLFNETVETARVRGHLSGEHFSVDGTLIQAWAGHKSFVPKVKSDDDSPPDGGAGSHENWHGEKRSNDTHESSTDS
QARLFRKSRGTGAMLCYMGHVLTDNRHGLVVNAQVTQANGTAERDTAAEMLADAAQFADTSITVGADKNYDTAGFVATCRAHGVTPHVAQNNGRAGGSAI
DGRTTRWAGYAVSQRKRKCIEQVFGWSKTVGRIRQAMFRGLQRVDQIFLLTQAAYNLTRMRTLAAKAA

 

Blast result :
Comments
ISBph2 is 78% aa similar to ISThsp18.
References
1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Bacher,J., Blanchard,J., Cohan,F., James,E., Lawrence,J., Lizotte-Waniewski,M., Moulin,L., Rainey,P., Riley,M., Souza,V., Wertz,J. and Young,P. (2008) Direct submission GenBank.