ISBph2
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010625 | ND | Burkholderia phymatum | Burkholderia phymatum STM815 |
DNA section
IS Length : 1335 bp
Ends
IR Length : 15/16
IRL : CAGGCTGTTGAAATACCTCCAGCGCACGTCATCCGCGCGGGAGGGGTAAA
IRR : CAGGCTGTTGAAAAACACCTTGCCGGCTTTGAGCACTTCGTTTCATTGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGCATGTGTT | CTAG | GGTCTGTTCA | 4 |
GCGTGGAAGT | TTAG | TACTACTGTG | 4 |
DNA sequence
CAGGCTGTTGAAATACCTCCAGCGCACGTCATCCGCGCGGGAGGGGTAAACGTTGAAATGAAGGATCGAACAACACTGAGACGGAAGCGATGCGCGGAGC
GGACGGCTATACAGAATCGATGTTCACGATGTCCAGGCTCGATGACTTCGTTCCGGCCAATCACCCGTTGCGACCGATTCGGCTGTGGTTGAACGAAGCG
CTCACTCGCATGGATTCGGTCTTTTCGCGCATGTACGAGAGCGACGCGAAGGGCGGACGCCCAAGTATCGCGCCGGAGAAGCTGATTCGCGCACTGCTGT
TGCAAGTGCTGTATTCGATTCGCAGCGAACGCATGCTGATGGAGCAAATCTCCTACAACATGCTGTTCCGCTGGTTCGTCGGACTGGCGATGGACGATGT
TGTTTGGGACCACTCCACCTTCAGTAAGAACCGCGACCGACTGATGGCTCATGATGTCATGGTCAGTCTGTTCAATGAGACGGTCGAGACAGCACGCGTG
CGTGGCCACCTGTCGGGCGAGCATTTCAGCGTCGACGGCACACTCATTCAGGCTTGGGCCGGACACAAGAGCTTTGTACCGAAGGTGAAGTCGGATGACG
ACTCGCCGCCTGACGGCGGTGCCGGCTCTCACGAGAACTGGCATGGCGAGAAGCGTAGCAACGACACGCATGAGTCCAGCACGGACAGTCAGGCCCGGCT
GTTTCGCAAGAGTCGTGGCACGGGCGCGATGCTTTGCTACATGGGGCACGTGCTGACTGATAACCGACACGGCCTCGTGGTGAACGCACAGGTGACGCAG
GCTAATGGCACAGCCGAGCGGGACACAGCAGCCGAAATGCTTGCGGACGCCGCGCAGTTTGCCGATACGTCGATTACGGTAGGTGCAGACAAGAACTACG
ACACGGCCGGCTTCGTGGCGACGTGCCGCGCACACGGCGTGACGCCACATGTTGCGCAAAACAATGGCCGCGCGGGTGGCTCCGCCATCGACGGACGCAC
AACGCGCTGGGCCGGCTATGCGGTCAGTCAGCGCAAGCGCAAATGCATTGAGCAGGTCTTTGGCTGGAGCAAGACGGTTGGAAGAATTCGGCAGGCGATG
TTTCGGGGCCTGCAACGAGTTGACCAGATCTTCCTGTTGACTCAGGCGGCCTACAACCTGACTCGCATGCGCACGCTCGCCGCGAAAGCGGCATAGGAGC
GACAGGCAGCGAGGGAATGGCATTGCATCCACTTGAATGAAAGGCTTCGAGCATTAAACCGACATCAATCAAATCGGCGCAGCGACTCAATGAAACGAAG
TGCTCAAAGCCGGCAAGGTGTTTTTCAACAGCCTG
GGACGGCTATACAGAATCGATGTTCACGATGTCCAGGCTCGATGACTTCGTTCCGGCCAATCACCCGTTGCGACCGATTCGGCTGTGGTTGAACGAAGCG
CTCACTCGCATGGATTCGGTCTTTTCGCGCATGTACGAGAGCGACGCGAAGGGCGGACGCCCAAGTATCGCGCCGGAGAAGCTGATTCGCGCACTGCTGT
TGCAAGTGCTGTATTCGATTCGCAGCGAACGCATGCTGATGGAGCAAATCTCCTACAACATGCTGTTCCGCTGGTTCGTCGGACTGGCGATGGACGATGT
TGTTTGGGACCACTCCACCTTCAGTAAGAACCGCGACCGACTGATGGCTCATGATGTCATGGTCAGTCTGTTCAATGAGACGGTCGAGACAGCACGCGTG
CGTGGCCACCTGTCGGGCGAGCATTTCAGCGTCGACGGCACACTCATTCAGGCTTGGGCCGGACACAAGAGCTTTGTACCGAAGGTGAAGTCGGATGACG
ACTCGCCGCCTGACGGCGGTGCCGGCTCTCACGAGAACTGGCATGGCGAGAAGCGTAGCAACGACACGCATGAGTCCAGCACGGACAGTCAGGCCCGGCT
GTTTCGCAAGAGTCGTGGCACGGGCGCGATGCTTTGCTACATGGGGCACGTGCTGACTGATAACCGACACGGCCTCGTGGTGAACGCACAGGTGACGCAG
GCTAATGGCACAGCCGAGCGGGACACAGCAGCCGAAATGCTTGCGGACGCCGCGCAGTTTGCCGATACGTCGATTACGGTAGGTGCAGACAAGAACTACG
ACACGGCCGGCTTCGTGGCGACGTGCCGCGCACACGGCGTGACGCCACATGTTGCGCAAAACAATGGCCGCGCGGGTGGCTCCGCCATCGACGGACGCAC
AACGCGCTGGGCCGGCTATGCGGTCAGTCAGCGCAAGCGCAAATGCATTGAGCAGGTCTTTGGCTGGAGCAAGACGGTTGGAAGAATTCGGCAGGCGATG
TTTCGGGGCCTGCAACGAGTTGACCAGATCTTCCTGTTGACTCAGGCGGCCTACAACCTGACTCGCATGCGCACGCTCGCCGCGAAAGCGGCATAGGAGC
GACAGGCAGCGAGGGAATGGCATTGCATCCACTTGAATGAAAGGCTTCGAGCATTAAACCGACATCAATCAAATCGGCGCAGCGACTCAATGAAACGAAG
TGCTCAAAGCCGGCAAGGTGTTTTTCAACAGCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1107 bp | 368 aa | 90 | 1196 | + | No |
Chemistry : DDE
ORF sequence :
MRGADGYTESMFTMSRLDDFVPANHPLRPIRLWLNEALTRMDSVFSRMYESDAKGGRPSIAPEKLIRALLLQVLYSIRSERMLMEQISYNMLFRWFVGLA
MDDVVWDHSTFSKNRDRLMAHDVMVSLFNETVETARVRGHLSGEHFSVDGTLIQAWAGHKSFVPKVKSDDDSPPDGGAGSHENWHGEKRSNDTHESSTDS
QARLFRKSRGTGAMLCYMGHVLTDNRHGLVVNAQVTQANGTAERDTAAEMLADAAQFADTSITVGADKNYDTAGFVATCRAHGVTPHVAQNNGRAGGSAI
DGRTTRWAGYAVSQRKRKCIEQVFGWSKTVGRIRQAMFRGLQRVDQIFLLTQAAYNLTRMRTLAAKAA
MDDVVWDHSTFSKNRDRLMAHDVMVSLFNETVETARVRGHLSGEHFSVDGTLIQAWAGHKSFVPKVKSDDDSPPDGGAGSHENWHGEKRSNDTHESSTDS
QARLFRKSRGTGAMLCYMGHVLTDNRHGLVVNAQVTQANGTAERDTAAEMLADAAQFADTSITVGADKNYDTAGFVATCRAHGVTPHVAQNNGRAGGSAI
DGRTTRWAGYAVSQRKRKCIEQVFGWSKTVGRIRQAMFRGLQRVDQIFLLTQAAYNLTRMRTLAAKAA
Blast result :
Comments
ISBph2 is 78% aa similar to ISThsp18.
References
1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Bacher,J., Blanchard,J., Cohan,F., James,E., Lawrence,J., Lizotte-Waniewski,M., Moulin,L., Rainey,P., Riley,M., Souza,V., Wertz,J. and Young,P. (2008) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Bacher,J., Blanchard,J., Cohan,F., James,E., Lawrence,J., Lizotte-Waniewski,M., Moulin,L., Rainey,P., Riley,M., Souza,V., Wertz,J. and Young,P. (2008) Direct submission GenBank.