ISButh6
- Family IS5
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABBD01000794 | ND | Burkholderia thailandensis | Burkholderia thailandensis TXDOH |
DNA section
IS Length : 1349 bp
Ends
IR Length : 11
IRL : CAGGCTGTTGATTTTAGGAACGGTGTAAACGGGCTTAGCGAGCGGTGCGT
IRR : CAGGCTGTTGAAAAGCGCCTCGCTTTGATGACCGGGGCGCTGTTTAAAAG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| NNNNNNCTAG | CTANNNNNNN | 0 |
DNA sequence
CAGGCTGTTGATTTTAGGAACGGTGTAAACGGGCTTAGCGAGCGGTGCGTTAGAGATATCGTGTTCATGACCTTGAGCGGATAAGCCGATGCGTGGAATG
GACGAGATGCAAGAACCGCTGTTCACGACGGTGAAGCTGGAAGACTTCGTGCCGGCCGATCACCCGTTGCGGCCGCTGCGGCTGCTGGTCAATCAGGCAC
TGAGGCGGCTCAACGGGTTGTTCGGCACGATCTACGCGGACAGTGGTCGCGCCTCGATTGCACCGGAGAAATTGCTGCGTGCGTTGTTGCTGCAAGTGTT
CTACTCGGTCCGCAGCGAGCGCATGCTGATGGAGCAGATGCGCTACAACCTGCTGTTTCGCTGGTTCGTCGGCTTGGCCATCGAAGACGCCGTCTGGGAC
CACTCGGTATTCTCGAAGAACCGCGACCGGCTGCTTGAGCACGAAGTAATCGAGGCGTTCTTTACCGAAGTCATGGGCTTGGCGGACAAGCAAGGGTTGC
TGTCCAGAGAGCACTTCTCGGTCGATGGCACACTGATCCAGGCGTGGGCCAGTCACAAGAGCTTCCGTCCCAAGGACGGCTCGGACGATCCGCCAGCCGG
CGGTGGCCGCAATGTCGACACCGACTGGAAGGGCAAGCGCCGCAGTAACGACACGCATGAATCGAGCACCGATCCGGATGCGCGCCTGTTCCGAAAGGGG
CGGCAAAGCGGAGCCATCCTTTGTTATCAGGGGCACATCCTGATGGAGAACCGCTCGGGCTTGGTGGTCGGCGCAGTGGTCAGCCACGCTGATGGTTTCG
GCGAACGCGCGAGTGCGTTGCGCCTGCTCGATTGCGTGCCGGGTCGTCACGCCAAGACGCTCGGCGCCGACAAGGGTTACGACATGCGCGACTTTGTGCG
GGACTGCCGAGCGCGCAAAGTGACGCCACACGTCGCGCGCAACGACACGCATCAAGGCGGCAGTGCGATCGACGGCCGTACCTCGCGGCACGCCGGTTAT
GGCATTAGCCAAGTGATTCGCAAACGCATCGAAGAGCACTTCGGCTGGGGCAAGACCGTCGGCAGGATTCGACAGACCGCGTATCGCGGCCTCAAACGGG
TCGACCAGCATTTCAAGCTGACGATGCTGGCGAGCAATCTGACTCGAATGGCGCGAATGCTGACGGTGGTGCCGCAAGGAGCGGTGCAATGAGCTGCCCA
AGCGCGGCCGTCGCACGGCAACGCGTCGGCTGGACCGCTCGCGAACGGTCCAGCGTCGGCGATTCGTTGGCAACTCGGCAGCCAAGCGCATACGAAATCC
TTTTAAACAGCGCCCCGGTCATCAAAGCGAGGCGCTTTTCAACAGCCTG
GACGAGATGCAAGAACCGCTGTTCACGACGGTGAAGCTGGAAGACTTCGTGCCGGCCGATCACCCGTTGCGGCCGCTGCGGCTGCTGGTCAATCAGGCAC
TGAGGCGGCTCAACGGGTTGTTCGGCACGATCTACGCGGACAGTGGTCGCGCCTCGATTGCACCGGAGAAATTGCTGCGTGCGTTGTTGCTGCAAGTGTT
CTACTCGGTCCGCAGCGAGCGCATGCTGATGGAGCAGATGCGCTACAACCTGCTGTTTCGCTGGTTCGTCGGCTTGGCCATCGAAGACGCCGTCTGGGAC
CACTCGGTATTCTCGAAGAACCGCGACCGGCTGCTTGAGCACGAAGTAATCGAGGCGTTCTTTACCGAAGTCATGGGCTTGGCGGACAAGCAAGGGTTGC
TGTCCAGAGAGCACTTCTCGGTCGATGGCACACTGATCCAGGCGTGGGCCAGTCACAAGAGCTTCCGTCCCAAGGACGGCTCGGACGATCCGCCAGCCGG
CGGTGGCCGCAATGTCGACACCGACTGGAAGGGCAAGCGCCGCAGTAACGACACGCATGAATCGAGCACCGATCCGGATGCGCGCCTGTTCCGAAAGGGG
CGGCAAAGCGGAGCCATCCTTTGTTATCAGGGGCACATCCTGATGGAGAACCGCTCGGGCTTGGTGGTCGGCGCAGTGGTCAGCCACGCTGATGGTTTCG
GCGAACGCGCGAGTGCGTTGCGCCTGCTCGATTGCGTGCCGGGTCGTCACGCCAAGACGCTCGGCGCCGACAAGGGTTACGACATGCGCGACTTTGTGCG
GGACTGCCGAGCGCGCAAAGTGACGCCACACGTCGCGCGCAACGACACGCATCAAGGCGGCAGTGCGATCGACGGCCGTACCTCGCGGCACGCCGGTTAT
GGCATTAGCCAAGTGATTCGCAAACGCATCGAAGAGCACTTCGGCTGGGGCAAGACCGTCGGCAGGATTCGACAGACCGCGTATCGCGGCCTCAAACGGG
TCGACCAGCATTTCAAGCTGACGATGCTGGCGAGCAATCTGACTCGAATGGCGCGAATGCTGACGGTGGTGCCGCAAGGAGCGGTGCAATGAGCTGCCCA
AGCGCGGCCGTCGCACGGCAACGCGTCGGCTGGACCGCTCGCGAACGGTCCAGCGTCGGCGATTCGTTGGCAACTCGGCAGCCAAGCGCATACGAAATCC
TTTTAAACAGCGCCCCGGTCATCAAAGCGAGGCGCTTTTCAACAGCCTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1095 bp | 364 aa | 98 | 1192 | + | No |
Chemistry : DDE
ORF sequence :
MDEMQEPLFTTVKLEDFVPADHPLRPLRLLVNQALRRLNGLFGTIYADSGRASIAPEKLLRALLLQVFYSVRSERMLMEQMRYNLLFRWFVGLAIEDAVW
DHSVFSKNRDRLLEHEVIEAFFTEVMGLADKQGLLSREHFSVDGTLIQAWASHKSFRPKDGSDDPPAGGGRNVDTDWKGKRRSNDTHESSTDPDARLFRK
GRQSGAILCYQGHILMENRSGLVVGAVVSHADGFGERASALRLLDCVPGRHAKTLGADKGYDMRDFVRDCRARKVTPHVARNDTHQGGSAIDGRTSRHAG
YGISQVIRKRIEEHFGWGKTVGRIRQTAYRGLKRVDQHFKLTMLASNLTRMARMLTVVPQGAVQ
DHSVFSKNRDRLLEHEVIEAFFTEVMGLADKQGLLSREHFSVDGTLIQAWASHKSFRPKDGSDDPPAGGGRNVDTDWKGKRRSNDTHESSTDPDARLFRK
GRQSGAILCYQGHILMENRSGLVVGAVVSHADGFGERASALRLLDCVPGRHAKTLGADKGYDMRDFVRDCRARKVTPHVARNDTHQGGSAIDGRTSRHAG
YGISQVIRKRIEEHFGWGKTVGRIRQTAYRGLKRVDQHFKLTMLASNLTRMARMLTVVPQGAVQ
Blast result :
Comments
ISButh6 is 97% aa similar to ISButh5.
References
1] ISfinder annotation (2010)
2] Read,T.D., Lentz,S.M., Nolan,N.M., Willner,K.M., Akmal,A., Inglis,T., Merritt,A., Lum,G., Miralles,I., Levy,A., Gee,J., Glass,M. and Wilkins,P. (2007) Direct submission GenBank.
2] Read,T.D., Lentz,S.M., Nolan,N.M., Willner,K.M., Akmal,A., Inglis,T., Merritt,A., Lum,G., Miralles,I., Levy,A., Gee,J., Glass,M. and Wilkins,P. (2007) Direct submission GenBank.