ISfinder Mirror Site

ISRssp11

Family IS5
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NZ_AATQ01000050	ND	Roseovarius sp.	Roseovarius sp. HTCC2601

DNA section

IS Length : 1356 bp

Ends

IR Length : 18/19

IRL : CAGGCTGCTGAAAAACTCCTGCCTCGACGCCTGTCGCGGAACATGATTCA
IRR : CAGGCTGCTGAAAAAGTCCGCTGTGAGGAACGATTTCCCTTGAGCAGGAG

Insertion site

Left flank	Direct repeat	Right flank	DR Length
CGTCCAAAAC	TTAA	AGCCATTGAG	4

DNA sequence

CAGGCTGCTGAAAAACTCCTGCCTCGACGCCTGTCGCGGAACATGATTCACCATCGCCACTACGATGACGATGGAATGTGGGATGCGTGGATCAGATCAG
GTGACGGGCTCGCTGTTCAGCTACGTCGATCTCGAGGAGCGCATTCCGACGCGCCACCCGCTTAGCAAGATCAGGACCGTCGTCAACGATGTGCTGCGCT
GCCTGGATGTCGAGTTCGACCGGCTCTACGCGGGGGAAGGCCGCCCCTCGATCGCGCCGGAACGATTGATCCGGGCCAGCCTGCTGCAAAACCTCTACTC
GATCCGGTCCAAGCGGCAGCTCGTGGAGCAGATGGACTACAACTTGCTGTTCCGCTGGTTTGTGGGCCTTGGGATCGATGACGTTGTCTGGGTCCCGACC
GTGTTCACGAAGAACCACGACCGGCTGCTGACCACGGACATGTCGCGCAAGATCATGGCCGCCATTCTGGCGCATCGCGAGGTGGCACCGCTGCTGTCGG
ACGACCATTTCTCGGTCGACGGCACCCTTGTGAAGGCCTGGGCGTCGATGAAGAGCTTCCAGCCGAAGGAAAGAGCGACGTCCGGTGGGGACGACGATCC
GGGCGATCCGCCCGATACCAGCGTGCCGCCCACCTCCTCCTCAGATCAATCCACCGCCGAGCCCGACCCGATGACCCGCCCCACACGCTGCAACGGCAAC
GCCGAAGTCGACTTCCGTGGCGAACGACGGTCGAACGCGACCCATGCTTCGATGACCGATCCGGAGGCCCGGCTGTTCAAGAAATCCCCCGGCGCCGGCG
CCATGCTGTGCTTCATGGGGCACAGCATGATGGAGAACCGCTCCGGCCTGATCGTGCAGGCCGACCTGACGCGGGCGGACGGCCACGCCGAGCGGCGTGC
TGCCATCGACATGCTTCACCGCCACTCGCCGGGATCGACCCGGCGCCTGACCCTGGCAGCGGACCGCGGTTACGACAGCGCCGACTTCGTCGCCGAGCTG
CGCCAAATGGTGGTCACGCCGCATGTCGCCCAGAAGTCTCGACACTCCGCCATCGACGGCAGAACCACCCGGCACCCCGGCTACGCCAAGTCACAGCGGC
GCCGGAAGAAGATCGAGGAACCTTTCGGCTGGGCCAAAACCGTCGGTGGCATGGCGCAGCCCCTGTAACGCGGCATCGAGCGCGTGCGGGCCCGCTTCAC
CTTGGCGATGGCGGCCTGCAACTTGGCGAGGCTTCCGAAACTGCTCGCCACCTGAACCAGAAAGTGGCTACTAGGACTGCCTCCTCGCACACCAGCCTGC
TTCGAGCTCCTGCTCAAGGGAAATCGTTCCTCACAGCGGACTTTTTCAGCAGCCTG

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
1086 bp	361 aa	83	1168	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGSDQVTGSLFSYVDLEERIPTRHPLSKIRTVVNDVLRCLDVEFDRLYAGEGRPSIAPERLIRASLLQNLYSIRSKRQLVEQMDYNLLFRWFVGLGIDD
VVWVPTVFTKNHDRLLTTDMSRKIMAAILAHREVAPLLSDDHFSVDGTLVKAWASMKSFQPKERATSGGDDDPGDPPDTSVPPTSSSDQSTAEPDPMTRP
TRCNGNAEVDFRGERRSNATHASMTDPEARLFKKSPGAGAMLCFMGHSMMENRSGLIVQADLTRADGHAERRAAIDMLHRHSPGSTRRLTLAADRGYDSA
DFVAELRQMVVTPHVAQKSRHSAIDGRTTRHPGYAKSQRRRKKIEEPFGWAKTVGGMAQPL

Blast result :

Comments

ISRssp11 is 85% aa similar to ISRosp6.

References

1] ISfinder annotation (2010)
2] Giovannoni,S.J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.