ISPph5
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011060 | ND | Pelodictyon phaeoclathratiforme | Pelodictyon phaeoclathratiforme BU-1 |
DNA section
IS Length : 1876 bp
Ends
IR Length : 12/17
IRL : GTGGATGAACGAAAAACTGTTATGATATTATAAAATAATAGTTTATATTG
IRR : GTGCCAGAAAGAAAACCCCTGTTTTTTGAAAATTTGACAACCTCCCGCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATCAGGACATCG | TAAATA | GTAGGACTCG | 6 |
AACGTCATCTCA | TAGATA | GTACCGGGGA | 6 |
TAATAAAAAGTT | TACGTA | ACACTCCCCA | 6 |
TAGGCAAACCAT | TTGTTA | GCAATTTTTT | 6 |
ACTGCTCAACTA | TAATTA | CAATGTCGGA | 6 |
TGATGCTATCGG | TAAGTA | TATTGCTGAT | 6 |
DNA sequence
GTGGATGAACGAAAAACTGTTATGATATTATAAAATAATAGTTTATATTGTTATTTCATGGTCAAAGATATTTGACGGACCCTGAGCTAAAGCGTAATAA
TACCCCATTAGAAGCATTTTTGATAGAGAAAAGGTGTTGCAGGGTGCCCTCAAAGAGAAACAGACTCCAAACTTCGTTTTTTGAAATCCACTATGCGTAG
CGTCATCAACCACCAAATGATGTTCGGTCGTACCGATATTTCTGCCATTGTTTTCGATCCGAAATCACGAGATGATATCCCAAAAATCTTGAGGGGCCTT
CAGGGCATCTACACCGACGAGGAGTTGCGCAAGCGTGTTTTTGCCATCCTCGAAGAGGTTCGTCCTGAACGGAAAAAAGGAGAAGGAAAAGCTGACCCAA
ACACAGGGCGTCCCGGTATGGAGCAATGGGCAATTTTGGTACTGGGTGTCGTTCGACTGGGAATCAACGCTGATTACGATCGGCTTCATGAATTGGTCAA
TCACCACGATACGCTTCGCCAGATGCTTGGTCACAACGATTGGACTGATAAAACATCTTATGAACTCCAGACCATCAAAGATAATGTCCGACTGTTTACC
CCCGAATTGCTTGATCGAATCAACCAGGAAATTGTCCGTGCAGGTCATACGTTAGTAAAAAAAAAGAGGAAGAAAATTTCCCTTTAATGGCCCGAGGTGA
TTCGTTTGTGGTGGAAACCAACGTTCACTTTCCTGCTGATACAAGCCAGTTGTTCGATGCCATTCGCAAAGCCATTGAGGTCTGTGCGAAATGGTCTTTT
GATGAAGGATTAAGTCAATGGCGCCAATACGATCATAACATCCGGCATATCAAAAGAATGCGTCGTATTGTGCAACAGCTCAAGCACTCGACATCAAAAA
AGCCGGAAAAGAAAGCTCTCAAAGATCAACAAATAAAGCAAGCACTCCTCGATTACCTTGCGGCAGTCGATTATCAGTTACAACGGGCAGTGCGTACCGG
CGCAGAACTGGGTGGCTTAAATCCGTTGCGGCTCAGCCAGCTTAACGGCTATATTGCTCATGCTGAGGTACAAATGGGGCAAATTCGTCGTCGGATAAAT
GACGAGGTTATTCCGCATGCGGAGAAAGTCTTTTCAATTTTTCAGCCACACACCGAGTGGATCAGTAAAGGCAAGGCGGGAGTGCCGGTTGAGTTGGGAT
TACGGGTCTGTATTATCGAAGATCAGTATCGTTTTATCCTGCATCATCAGGTCATGGAAAAAGTTGTCGATAGCGACATCGCAGTGTCCATTATCGAAGA
GACCAAGCAACGTTTTCCAAACTTGCGATCGATCAGCTACGACAAAGGCTTTCATAGCCCGGATAACCAACGCGACCTGAAAGCGCTTCTTGAAAAAGTT
GTTATGCCGAAAAAAGGCAAGCTCTCAAAAATCGACAAAGCTCATGAATCCGAGCCGGAATTCAGGAGACTGCGACGGCAGCATTCGGCAGTTGAATCAG
CAATCAACGCACTTGAGGTTCACGGCTTGGATATATGCCCTGATGATGGCATCAAAGGATTCAATCGCTATGTTGCCCTTGCAGTGCTGGCTCGCAACAT
TCATCGTTATGGAGCACTCTTGTACAAGCAGGATGCGAAGCGACATCGAGGGCCCTACAAAAAAGCTGCCTGAGTTCTCTCCCCAAAAAAAGAGTTTTTT
ACCAATTCGCAGGGAGAGATCCGTTCGTTATGACGCTTCCTGGAGCAAAATTCGGTAGTTTACCCATGGCGTGTCACGATCAGCACAAAAACGCCTTTTG
TTGATCATTAAAAATGGTTTTTAATCCGGCGGGAGGTTGTCAAATTTTCAAAAAACAGGGGTTTTCTTTCTGGCAC
TACCCCATTAGAAGCATTTTTGATAGAGAAAAGGTGTTGCAGGGTGCCCTCAAAGAGAAACAGACTCCAAACTTCGTTTTTTGAAATCCACTATGCGTAG
CGTCATCAACCACCAAATGATGTTCGGTCGTACCGATATTTCTGCCATTGTTTTCGATCCGAAATCACGAGATGATATCCCAAAAATCTTGAGGGGCCTT
CAGGGCATCTACACCGACGAGGAGTTGCGCAAGCGTGTTTTTGCCATCCTCGAAGAGGTTCGTCCTGAACGGAAAAAAGGAGAAGGAAAAGCTGACCCAA
ACACAGGGCGTCCCGGTATGGAGCAATGGGCAATTTTGGTACTGGGTGTCGTTCGACTGGGAATCAACGCTGATTACGATCGGCTTCATGAATTGGTCAA
TCACCACGATACGCTTCGCCAGATGCTTGGTCACAACGATTGGACTGATAAAACATCTTATGAACTCCAGACCATCAAAGATAATGTCCGACTGTTTACC
CCCGAATTGCTTGATCGAATCAACCAGGAAATTGTCCGTGCAGGTCATACGTTAGTAAAAAAAAAGAGGAAGAAAATTTCCCTTTAATGGCCCGAGGTGA
TTCGTTTGTGGTGGAAACCAACGTTCACTTTCCTGCTGATACAAGCCAGTTGTTCGATGCCATTCGCAAAGCCATTGAGGTCTGTGCGAAATGGTCTTTT
GATGAAGGATTAAGTCAATGGCGCCAATACGATCATAACATCCGGCATATCAAAAGAATGCGTCGTATTGTGCAACAGCTCAAGCACTCGACATCAAAAA
AGCCGGAAAAGAAAGCTCTCAAAGATCAACAAATAAAGCAAGCACTCCTCGATTACCTTGCGGCAGTCGATTATCAGTTACAACGGGCAGTGCGTACCGG
CGCAGAACTGGGTGGCTTAAATCCGTTGCGGCTCAGCCAGCTTAACGGCTATATTGCTCATGCTGAGGTACAAATGGGGCAAATTCGTCGTCGGATAAAT
GACGAGGTTATTCCGCATGCGGAGAAAGTCTTTTCAATTTTTCAGCCACACACCGAGTGGATCAGTAAAGGCAAGGCGGGAGTGCCGGTTGAGTTGGGAT
TACGGGTCTGTATTATCGAAGATCAGTATCGTTTTATCCTGCATCATCAGGTCATGGAAAAAGTTGTCGATAGCGACATCGCAGTGTCCATTATCGAAGA
GACCAAGCAACGTTTTCCAAACTTGCGATCGATCAGCTACGACAAAGGCTTTCATAGCCCGGATAACCAACGCGACCTGAAAGCGCTTCTTGAAAAAGTT
GTTATGCCGAAAAAAGGCAAGCTCTCAAAAATCGACAAAGCTCATGAATCCGAGCCGGAATTCAGGAGACTGCGACGGCAGCATTCGGCAGTTGAATCAG
CAATCAACGCACTTGAGGTTCACGGCTTGGATATATGCCCTGATGATGGCATCAAAGGATTCAATCGCTATGTTGCCCTTGCAGTGCTGGCTCGCAACAT
TCATCGTTATGGAGCACTCTTGTACAAGCAGGATGCGAAGCGACATCGAGGGCCCTACAAAAAAGCTGCCTGAGTTCTCTCCCCAAAAAAAGAGTTTTTT
ACCAATTCGCAGGGAGAGATCCGTTCGTTATGACGCTTCCTGGAGCAAAATTCGGTAGTTTACCCATGGCGTGTCACGATCAGCACAAAAACGCCTTTTG
TTGATCATTAAAAATGGTTTTTAATCCGGCGGGAGGTTGTCAAATTTTCAAAAAACAGGGGTTTTCTTTCTGGCAC
Recoding section
- Recoding by frameshift
- Frame -1
- Type transcriptional
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence : No
- Secondary structure : No-structure
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
495 bp | 164 aa | 193 | 687 | + | No |
Description : First part of the transposase
ORF sequence :
MRSVINHQMMFGRTDISAIVFDPKSRDDIPKILRGLQGIYTDEELRKRVFAILEEVRPERKKGEGKADPNTGRPGMEQWAILVLGVVRLGINADYDRLHE
LVNHHDTLRQMLGHNDWTDKTSYELQTIKDNVRLFTPELLDRINQEIVRAGHTLVKKKRKKISL
LVNHHDTLRQMLGHNDWTDKTSYELQTIKDNVRLFTPELLDRINQEIVRAGHTLVKKKRKKISL
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1059 bp | 352 aa | 615 | 1673 | + | No |
Description : Second part of the transposase
ORF sequence :
SNQPGNCPCRSYVSKKKEEENFPLMARGDSFVVETNVHFPADTSQLFDAIRKAIEVCAKWSFDEGLSQWRQYDHNIRHIKRMRRIVQQLKHSTSKKPEKK
ALKDQQIKQALLDYLAAVDYQLQRAVRTGAELGGLNPLRLSQLNGYIAHAEVQMGQIRRRINDEVIPHAEKVFSIFQPHTEWISKGKAGVPVELGLRVCI
IEDQYRFILHHQVMEKVVDSDIAVSIIEETKQRFPNLRSISYDKGFHSPDNQRDLKALLEKVVMPKKGKLSKIDKAHESEPEFRRLRRQHSAVESAINAL
EVHGLDICPDDGIKGFNRYVALAVLARNIHRYGALLYKQDAKRHRGPYKKAA
ALKDQQIKQALLDYLAAVDYQLQRAVRTGAELGGLNPLRLSQLNGYIAHAEVQMGQIRRRINDEVIPHAEKVFSIFQPHTEWISKGKAGVPVELGLRVCI
IEDQYRFILHHQVMEKVVDSDIAVSIIEETKQRFPNLRSISYDKGFHSPDNQRDLKALLEKVVMPKKGKLSKIDKAHESEPEFRRLRRQHSAVESAINAL
EVHGLDICPDDGIKGFNRYVALAVLARNIHRYGALLYKQDAKRHRGPYKKAA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1481 bp | 493 aa | 193 | 1673 | + | Yes |
Chemistry : DDE
ORF sequence :
MRSVINHQMMFGRTDISAIVFDPKSRDDIPKILRGLQGIYTDEELRKRVFAILEEVRPERKKGEGKADPNTGRPGMEQWAILVLGVVRLGINADYDRLHE
LVNHHDTLRQMLGHNDWTDKTSYELQTIKDNVRLFTPELLDRINQEIVRAGHTLVKKKEEENFPLMARGDSFVVETNVHFPADTSQLFDAIRKAIEVCAK
WSFDEGLSQWRQYDHNIRHIKRMRRIVQQLKHSTSKKPEKKALKDQQIKQALLDYLAAVDYQLQRAVRTGAELGGLNPLRLSQLNGYIAHAEVQMGQIRR
RINDEVIPHAEKVFSIFQPHTEWISKGKAGVPVELGLRVCIIEDQYRFILHHQVMEKVVDSDIAVSIIEETKQRFPNLRSISYDKGFHSPDNQRDLKALL
EKVVMPKKGKLSKIDKAHESEPEFRRLRRQHSAVESAINALEVHGLDICPDDGIKGFNRYVALAVLARNIHRYGALLYKQDAKRHRGPYKKAA
LVNHHDTLRQMLGHNDWTDKTSYELQTIKDNVRLFTPELLDRINQEIVRAGHTLVKKKEEENFPLMARGDSFVVETNVHFPADTSQLFDAIRKAIEVCAK
WSFDEGLSQWRQYDHNIRHIKRMRRIVQQLKHSTSKKPEKKALKDQQIKQALLDYLAAVDYQLQRAVRTGAELGGLNPLRLSQLNGYIAHAEVQMGQIRR
RINDEVIPHAEKVFSIFQPHTEWISKGKAGVPVELGLRVCIIEDQYRFILHHQVMEKVVDSDIAVSIIEETKQRFPNLRSISYDKGFHSPDNQRDLKALL
EKVVMPKKGKLSKIDKAHESEPEFRRLRRQHSAVESAINALEVHGLDICPDDGIKGFNRYVALAVLARNIHRYGALLYKQDAKRHRGPYKKAA
Blast result :
Comments
ISPph5 is 57% aa similar to ISCku10.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
References
1] ISfinder annotation (2010).
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Liu,Z., Li,T., Zhao,F., Overmann,J., Bryant,D.A. and Richardson,P. (2008) Direct submission Genbank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Liu,Z., Li,T., Zhao,F., Overmann,J., Bryant,D.A. and Richardson,P. (2008) Direct submission Genbank.