ISRssp10

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABCL01000006 ND Roseovarius sp.
Roseovarius sp. TM1035
DNA section
IS Length : 1364 bp

Ends


IR Length : 21/22

IRL : CAGGCTGCTGAAAAAGTCGGCCCTCGACGCGGTTATGAGAACATGATTCA
IRR : CAGGCTGCTGAAGAAGTCAGCCTTGAAGGACGTTATTCTTCCCCCACGGT

Insertion site


Left flankDirect repeatRight flankDR Length
ACCGGCACCGTTAAGTGTCGAGTA4

DNA sequence

CAGGCTGCTGAAAAAGTCGGCCCTCGACGCGGTTATGAGAACATGATTCACTTCCGGCATGGCAGCGGCAGCAGGAGGTGGCGATGCGTGGGACGGACGA
GGCAAGCGGGTCGCTGTTCAGCTATGTTGATCTTGAGCAGCGGGTTCCGGATCGTCATCCGCTGCGGTTGATCCGTCGGGTCGTCAATGACGCGCTGGCC
AGCCTGGATGCCGAGTTCGCCGCGCTCTACACCGATTTTGGCCGCCCCTCCATCGCGCCGGAGCGACTGATCCGTGCGAGCCTTCTTCAGCTCCTGTTCT
CGATCCGCTCGGAACGGCAGCTGATGGAACAGATGAACTATAACCTGCTGTTTCGGTGGTTCGTCGGCCTTGGCATCGACGATCCGGTCTGGGTTCCTAC
GGTGTTTACCAAGAACCGCGATCGGCTGCTGACGACCGACATGTCGCGCAAGCTGATGGCGGCGATCCTGGCGCACCCGGAGGTCCGTCCGCTCCTCTCG
GATGAACACTTCTCGGTAGACGGCACTTTGGTCAAGGCGTGGGCGTCCATGAAGAGCTTTCAGCCCAGGAACAGCGCGCCGCCACCGCATGACGATGATC
CTGGCGGACCGCCACCACCGGCCGACGCGACCTTCGCAAACACCGAACCGCAGCCCCAGCAGACAGAAACGCAGCCGATGCCCGACACGCCCCGCCATAT
CCGCAACGCCGCAGTGAACTTCCGGGGCCAGAAGCGCTCGAACGCAACCCACATCTCTGTGACGGACCCCGATGCCCGTCTCTACAAGAAAGCACCGGGT
GCCGCGGCGACATTGTGCTTCATGGGACATACGCTGATGGAGAACCGCAACGGGCTGATCGTGCAGGCCGATTTGACCCATGCCGATGGTTACGGCGAGC
GCAAGGCGGCCCTCGAGATGATCAACCGACACTCCCCTGGCTCGACCCGGCGCCTGACGCTTGGAGCAGACAAGGGATATGACAGCGCCAACTTTGTTGC
CGCACTCAGGCGCATGGTTGTGACGCCACATGTCGCGCAGAAGGCCCGGAGTTCCGCAATCGACGGGCGAACCACCCAGCATCCCGGTTATGCCTTGTCA
CAGCGGCGCCGGAAGAAGATCGAGGAACCCTTCGGCTGGGCCAAGACCGTGGGCGGCATGGCCCAGACTGTTCATCGCGGCCTCGACAGGGTCCGCGCCC
AATTCACAATGACCATGGCAGCCTGCAATCTGGCCAGACTACCGAAACTCCTTGCCCCCTGACGAAGGGGTCAAACCCGACCCGGCGTCCGCAGTCGCAA
AGAGCCACCTTCAAACCGTGGGGGAAGAATAACGTCCTTCAAGGCTGACTTCTTCAGCAGCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1179 bp392 aa841262+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGTDEASGSLFSYVDLEQRVPDRHPLRLIRRVVNDALASLDAEFAALYTDFGRPSIAPERLIRASLLQLLFSIRSERQLMEQMNYNLLFRWFVGLGIDD
PVWVPTVFTKNRDRLLTTDMSRKLMAAILAHPEVRPLLSDEHFSVDGTLVKAWASMKSFQPRNSAPPPHDDDPGGPPPPADATFANTEPQPQQTETQPMP
DTPRHIRNAAVNFRGQKRSNATHISVTDPDARLYKKAPGAAATLCFMGHTLMENRNGLIVQADLTHADGYGERKAALEMINRHSPGSTRRLTLGADKGYD
SANFVAALRRMVVTPHVAQKARSSAIDGRTTQHPGYALSQRRRKKIEEPFGWAKTVGGMAQTVHRGLDRVRAQFTMTMAACNLARLPKLLAP

 

Blast result :
Comments
ISRssp10 is 86% aa similar to ISRosp6.
References
1] ISfinder annotation (2010)
2] Belas,R., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.