ISRssp10
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABCL01000006 | ND | Roseovarius sp. | Roseovarius sp. TM1035 |
DNA section
IS Length : 1364 bp
Ends
IR Length : 21/22
IRL : CAGGCTGCTGAAAAAGTCGGCCCTCGACGCGGTTATGAGAACATGATTCA
IRR : CAGGCTGCTGAAGAAGTCAGCCTTGAAGGACGTTATTCTTCCCCCACGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACCGGCACCG | TTAA | GTGTCGAGTA | 4 |
DNA sequence
CAGGCTGCTGAAAAAGTCGGCCCTCGACGCGGTTATGAGAACATGATTCACTTCCGGCATGGCAGCGGCAGCAGGAGGTGGCGATGCGTGGGACGGACGA
GGCAAGCGGGTCGCTGTTCAGCTATGTTGATCTTGAGCAGCGGGTTCCGGATCGTCATCCGCTGCGGTTGATCCGTCGGGTCGTCAATGACGCGCTGGCC
AGCCTGGATGCCGAGTTCGCCGCGCTCTACACCGATTTTGGCCGCCCCTCCATCGCGCCGGAGCGACTGATCCGTGCGAGCCTTCTTCAGCTCCTGTTCT
CGATCCGCTCGGAACGGCAGCTGATGGAACAGATGAACTATAACCTGCTGTTTCGGTGGTTCGTCGGCCTTGGCATCGACGATCCGGTCTGGGTTCCTAC
GGTGTTTACCAAGAACCGCGATCGGCTGCTGACGACCGACATGTCGCGCAAGCTGATGGCGGCGATCCTGGCGCACCCGGAGGTCCGTCCGCTCCTCTCG
GATGAACACTTCTCGGTAGACGGCACTTTGGTCAAGGCGTGGGCGTCCATGAAGAGCTTTCAGCCCAGGAACAGCGCGCCGCCACCGCATGACGATGATC
CTGGCGGACCGCCACCACCGGCCGACGCGACCTTCGCAAACACCGAACCGCAGCCCCAGCAGACAGAAACGCAGCCGATGCCCGACACGCCCCGCCATAT
CCGCAACGCCGCAGTGAACTTCCGGGGCCAGAAGCGCTCGAACGCAACCCACATCTCTGTGACGGACCCCGATGCCCGTCTCTACAAGAAAGCACCGGGT
GCCGCGGCGACATTGTGCTTCATGGGACATACGCTGATGGAGAACCGCAACGGGCTGATCGTGCAGGCCGATTTGACCCATGCCGATGGTTACGGCGAGC
GCAAGGCGGCCCTCGAGATGATCAACCGACACTCCCCTGGCTCGACCCGGCGCCTGACGCTTGGAGCAGACAAGGGATATGACAGCGCCAACTTTGTTGC
CGCACTCAGGCGCATGGTTGTGACGCCACATGTCGCGCAGAAGGCCCGGAGTTCCGCAATCGACGGGCGAACCACCCAGCATCCCGGTTATGCCTTGTCA
CAGCGGCGCCGGAAGAAGATCGAGGAACCCTTCGGCTGGGCCAAGACCGTGGGCGGCATGGCCCAGACTGTTCATCGCGGCCTCGACAGGGTCCGCGCCC
AATTCACAATGACCATGGCAGCCTGCAATCTGGCCAGACTACCGAAACTCCTTGCCCCCTGACGAAGGGGTCAAACCCGACCCGGCGTCCGCAGTCGCAA
AGAGCCACCTTCAAACCGTGGGGGAAGAATAACGTCCTTCAAGGCTGACTTCTTCAGCAGCCTG
GGCAAGCGGGTCGCTGTTCAGCTATGTTGATCTTGAGCAGCGGGTTCCGGATCGTCATCCGCTGCGGTTGATCCGTCGGGTCGTCAATGACGCGCTGGCC
AGCCTGGATGCCGAGTTCGCCGCGCTCTACACCGATTTTGGCCGCCCCTCCATCGCGCCGGAGCGACTGATCCGTGCGAGCCTTCTTCAGCTCCTGTTCT
CGATCCGCTCGGAACGGCAGCTGATGGAACAGATGAACTATAACCTGCTGTTTCGGTGGTTCGTCGGCCTTGGCATCGACGATCCGGTCTGGGTTCCTAC
GGTGTTTACCAAGAACCGCGATCGGCTGCTGACGACCGACATGTCGCGCAAGCTGATGGCGGCGATCCTGGCGCACCCGGAGGTCCGTCCGCTCCTCTCG
GATGAACACTTCTCGGTAGACGGCACTTTGGTCAAGGCGTGGGCGTCCATGAAGAGCTTTCAGCCCAGGAACAGCGCGCCGCCACCGCATGACGATGATC
CTGGCGGACCGCCACCACCGGCCGACGCGACCTTCGCAAACACCGAACCGCAGCCCCAGCAGACAGAAACGCAGCCGATGCCCGACACGCCCCGCCATAT
CCGCAACGCCGCAGTGAACTTCCGGGGCCAGAAGCGCTCGAACGCAACCCACATCTCTGTGACGGACCCCGATGCCCGTCTCTACAAGAAAGCACCGGGT
GCCGCGGCGACATTGTGCTTCATGGGACATACGCTGATGGAGAACCGCAACGGGCTGATCGTGCAGGCCGATTTGACCCATGCCGATGGTTACGGCGAGC
GCAAGGCGGCCCTCGAGATGATCAACCGACACTCCCCTGGCTCGACCCGGCGCCTGACGCTTGGAGCAGACAAGGGATATGACAGCGCCAACTTTGTTGC
CGCACTCAGGCGCATGGTTGTGACGCCACATGTCGCGCAGAAGGCCCGGAGTTCCGCAATCGACGGGCGAACCACCCAGCATCCCGGTTATGCCTTGTCA
CAGCGGCGCCGGAAGAAGATCGAGGAACCCTTCGGCTGGGCCAAGACCGTGGGCGGCATGGCCCAGACTGTTCATCGCGGCCTCGACAGGGTCCGCGCCC
AATTCACAATGACCATGGCAGCCTGCAATCTGGCCAGACTACCGAAACTCCTTGCCCCCTGACGAAGGGGTCAAACCCGACCCGGCGTCCGCAGTCGCAA
AGAGCCACCTTCAAACCGTGGGGGAAGAATAACGTCCTTCAAGGCTGACTTCTTCAGCAGCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1179 bp | 392 aa | 84 | 1262 | + | No |
Chemistry : DDE
ORF sequence :
MRGTDEASGSLFSYVDLEQRVPDRHPLRLIRRVVNDALASLDAEFAALYTDFGRPSIAPERLIRASLLQLLFSIRSERQLMEQMNYNLLFRWFVGLGIDD
PVWVPTVFTKNRDRLLTTDMSRKLMAAILAHPEVRPLLSDEHFSVDGTLVKAWASMKSFQPRNSAPPPHDDDPGGPPPPADATFANTEPQPQQTETQPMP
DTPRHIRNAAVNFRGQKRSNATHISVTDPDARLYKKAPGAAATLCFMGHTLMENRNGLIVQADLTHADGYGERKAALEMINRHSPGSTRRLTLGADKGYD
SANFVAALRRMVVTPHVAQKARSSAIDGRTTQHPGYALSQRRRKKIEEPFGWAKTVGGMAQTVHRGLDRVRAQFTMTMAACNLARLPKLLAP
PVWVPTVFTKNRDRLLTTDMSRKLMAAILAHPEVRPLLSDEHFSVDGTLVKAWASMKSFQPRNSAPPPHDDDPGGPPPPADATFANTEPQPQQTETQPMP
DTPRHIRNAAVNFRGQKRSNATHISVTDPDARLYKKAPGAAATLCFMGHTLMENRNGLIVQADLTHADGYGERKAALEMINRHSPGSTRRLTLGADKGYD
SANFVAALRRMVVTPHVAQKARSSAIDGRTTQHPGYALSQRRRKKIEEPFGWAKTVGGMAQTVHRGLDRVRAQFTMTMAACNLARLPKLLAP
Blast result :
Comments
ISRssp10 is 86% aa similar to ISRosp6.
References
1] ISfinder annotation (2010)
2] Belas,R., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.
2] Belas,R., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.