ISSac3
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007759 | ND | Syntrophus aciditrophicus | Syntrophus aciditrophicus SB |
DNA section
IS Length : 1595 bp
Ends
IR Length : 17
IRL : GTCCGTCCTGAAAAATACGGGCTGCAACCCGCATAAATAATGAAACTGTT
IRR : GTCCGTCCTGAAAAATAGGATGTGAAAAATTTTTTGGTTGATCGATTCTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATAGGATGC | TAAATA | GGATATTGAC | 6 |
CTATCCTTAC | TACTTA | AAAAGTCAGG | 6 |
DNA sequence
GTCCGTCCTGAAAAATACGGGCTGCAACCCGCATAAATAATGAAACTGTTCTTTGAAAACTGAAGAAAATTGTGGATTTGCAGTTGTTTCTACTCTGAAA
ATGTACTATAAGTGGCTGATATGAAAGTACATATTCCAGAAAGGCAACTTCTTATGTTCGAGACGCAGTTTTCGGATGTCCTCAACCCGGAGCATGAGTT
ACTTCGTGCCGCACGCTTGATCGATTGGGACAACATCCATGATACACTGTCTGCTTACTATAGCCTCCGGGGTCGCCAGGGGAAATCCATTCGACTGATG
GTCGGCATACACATTTTGAAACATCGCTATAACTGTTCCGACGAACGAGCGGTTGAAATGCTGCATGAAAACGCCTACTGGCAGTGCTTTTGCGGATTCA
ACAGCTTTCAGCGTGGACAGATTATGGAAGCCACATCCCTGGTGAAGTTTCGGAATCGAATCGGCACGGAAGGGATGAAAGAGATAGAGGCGGCGTTGCT
CAAGACCTGGTCCGAGATGGGCTTGGTAAAAGCCAGACGGGTGGCGGTCGATACCACTGCTCAACCCAAGAACATCGCCTATCCGACGGACGCCGATCTC
CTTTACCGGATTAGAGAGAAGATCGTCAAGCAAGTCCAAAGGGTTCGTGAGGAGGTAACCCTTCGGAAGCCCTTTCGCACCTTCAATCGATCTGGTAAAA
AACTCCTCCTCGGAATCAAGAAGTTCCACCGAAAAAATCCGGAAGGCAGGAAAGAGGAGATCAAAAAACTCAAAGAGATGACCCGTCATGTGGTCGAAAA
GACCGGAAGGGTGGTAAGCAGTCTTTACCGTCGAGGGCTCAAGGAATCGGGACGGAAACTCAATCGTCTGGTTTCTCTCGGGAAGAAAATCGTCAATCAA
ACGGAGGAGGTTCTCTCCGGCCACCTTCCTCGAAAGCGGATTTACTCCCTTCATGAGCCGAATGTGGCCGTGATCAGGAAAGGAAAGAGCCACCCCGACA
CTGAGTTTGGAGCACTTATTGCTCTTGCAAAAAACGATGACGGTTTGATCCTGTCCCATGTGGAATATCAGCATAACGTCGCCGATGTGAAGACCTTGGG
ACGGGTGATCACCGGAATCAAGACCAATGTGGGACAACGACCACGAGAAGTTGCGGCGGATCGGGGATTCGATCAATCCCTCAAAAAACAGGAAAACTGC
CGCAGACGGTGGGGCATCAAAAGAATCGCCATTCCAAAGAAGGGAAAGACGCCTCATCCGGACAGCAAAGAATCCTGGTTCAGAAAAGCCTTGAAGCAAA
GAGTCAAGATTGAACCCGTTATCGGTCATCTCAAAAGCGATCATCGCATGAATCGCTGTCGGTACAAGGGAGCGGCAGGAGATACCGTCAATGTTGTATG
GGCCACCCTCGCCTGGAACATGAAAAAGATTGTCCAACTGCATGGGCAAATGGGATAAAAGCAAGCCTTAGAGGGAATCGACAGACAGTGTAGAGAAAAT
CATTCAGAAAATCTCTTCTTTAGCCGCAATCATCTTCAGTTTTCAAAGAATCGATCAACCAAAAAATTTTTCACATCCTATTTTTCAGGACGGAC
ATGTACTATAAGTGGCTGATATGAAAGTACATATTCCAGAAAGGCAACTTCTTATGTTCGAGACGCAGTTTTCGGATGTCCTCAACCCGGAGCATGAGTT
ACTTCGTGCCGCACGCTTGATCGATTGGGACAACATCCATGATACACTGTCTGCTTACTATAGCCTCCGGGGTCGCCAGGGGAAATCCATTCGACTGATG
GTCGGCATACACATTTTGAAACATCGCTATAACTGTTCCGACGAACGAGCGGTTGAAATGCTGCATGAAAACGCCTACTGGCAGTGCTTTTGCGGATTCA
ACAGCTTTCAGCGTGGACAGATTATGGAAGCCACATCCCTGGTGAAGTTTCGGAATCGAATCGGCACGGAAGGGATGAAAGAGATAGAGGCGGCGTTGCT
CAAGACCTGGTCCGAGATGGGCTTGGTAAAAGCCAGACGGGTGGCGGTCGATACCACTGCTCAACCCAAGAACATCGCCTATCCGACGGACGCCGATCTC
CTTTACCGGATTAGAGAGAAGATCGTCAAGCAAGTCCAAAGGGTTCGTGAGGAGGTAACCCTTCGGAAGCCCTTTCGCACCTTCAATCGATCTGGTAAAA
AACTCCTCCTCGGAATCAAGAAGTTCCACCGAAAAAATCCGGAAGGCAGGAAAGAGGAGATCAAAAAACTCAAAGAGATGACCCGTCATGTGGTCGAAAA
GACCGGAAGGGTGGTAAGCAGTCTTTACCGTCGAGGGCTCAAGGAATCGGGACGGAAACTCAATCGTCTGGTTTCTCTCGGGAAGAAAATCGTCAATCAA
ACGGAGGAGGTTCTCTCCGGCCACCTTCCTCGAAAGCGGATTTACTCCCTTCATGAGCCGAATGTGGCCGTGATCAGGAAAGGAAAGAGCCACCCCGACA
CTGAGTTTGGAGCACTTATTGCTCTTGCAAAAAACGATGACGGTTTGATCCTGTCCCATGTGGAATATCAGCATAACGTCGCCGATGTGAAGACCTTGGG
ACGGGTGATCACCGGAATCAAGACCAATGTGGGACAACGACCACGAGAAGTTGCGGCGGATCGGGGATTCGATCAATCCCTCAAAAAACAGGAAAACTGC
CGCAGACGGTGGGGCATCAAAAGAATCGCCATTCCAAAGAAGGGAAAGACGCCTCATCCGGACAGCAAAGAATCCTGGTTCAGAAAAGCCTTGAAGCAAA
GAGTCAAGATTGAACCCGTTATCGGTCATCTCAAAAGCGATCATCGCATGAATCGCTGTCGGTACAAGGGAGCGGCAGGAGATACCGTCAATGTTGTATG
GGCCACCCTCGCCTGGAACATGAAAAAGATTGTCCAACTGCATGGGCAAATGGGATAAAAGCAAGCCTTAGAGGGAATCGACAGACAGTGTAGAGAAAAT
CATTCAGAAAATCTCTTCTTTAGCCGCAATCATCTTCAGTTTTCAAAGAATCGATCAACCAAAAAATTTTTCACATCCTATTTTTCAGGACGGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1347 bp | 448 aa | 112 | 1458 | + | No |
Chemistry : DDE
ORF sequence :
MADMKVHIPERQLLMFETQFSDVLNPEHELLRAARLIDWDNIHDTLSAYYSLRGRQGKSIRLMVGIHILKHRYNCSDERAVEMLHENAYWQCFCGFNSFQ
RGQIMEATSLVKFRNRIGTEGMKEIEAALLKTWSEMGLVKARRVAVDTTAQPKNIAYPTDADLLYRIREKIVKQVQRVREEVTLRKPFRTFNRSGKKLLL
GIKKFHRKNPEGRKEEIKKLKEMTRHVVEKTGRVVSSLYRRGLKESGRKLNRLVSLGKKIVNQTEEVLSGHLPRKRIYSLHEPNVAVIRKGKSHPDTEFG
ALIALAKNDDGLILSHVEYQHNVADVKTLGRVITGIKTNVGQRPREVAADRGFDQSLKKQENCRRRWGIKRIAIPKKGKTPHPDSKESWFRKALKQRVKI
EPVIGHLKSDHRMNRCRYKGAAGDTVNVVWATLAWNMKKIVQLHGQMG
RGQIMEATSLVKFRNRIGTEGMKEIEAALLKTWSEMGLVKARRVAVDTTAQPKNIAYPTDADLLYRIREKIVKQVQRVREEVTLRKPFRTFNRSGKKLLL
GIKKFHRKNPEGRKEEIKKLKEMTRHVVEKTGRVVSSLYRRGLKESGRKLNRLVSLGKKIVNQTEEVLSGHLPRKRIYSLHEPNVAVIRKGKSHPDTEFG
ALIALAKNDDGLILSHVEYQHNVADVKTLGRVITGIKTNVGQRPREVAADRGFDQSLKKQENCRRRWGIKRIAIPKKGKTPHPDSKESWFRKALKQRVKI
EPVIGHLKSDHRMNRCRYKGAAGDTVNVVWATLAWNMKKIVQLHGQMG
Blast result :
Comments
ISSac3 is 50% aa similar to ISCde2.
References
1] ISfinder annotation (2010)
2] McInerney,M.J., Rohlin,L., Mouttaki,H., Kim,U., Krupp,R.S., Rios-Hernandez,L., Sieber,J., Struchtemeyer,C.G., Bhattacharyya,A., Campbell,J.W. and Gunsalus,R.P. (2007) Proc. Natl. Acad. Sci. U.S.A. 104 (18), 7600-7605.
3] Gunsalus,R., Rohlin,L., Kim,U., Krupp,R., Bhattacharyya,A., Campbell,J., Mclerney,M., Moutakki,H. and Rio-Hernandez,L. (2006) Direct submission Genbank.
2] McInerney,M.J., Rohlin,L., Mouttaki,H., Kim,U., Krupp,R.S., Rios-Hernandez,L., Sieber,J., Struchtemeyer,C.G., Bhattacharyya,A., Campbell,J.W. and Gunsalus,R.P. (2007) Proc. Natl. Acad. Sci. U.S.A. 104 (18), 7600-7605.
3] Gunsalus,R., Rohlin,L., Kim,U., Krupp,R., Bhattacharyya,A., Campbell,J., Mclerney,M., Moutakki,H. and Rio-Hernandez,L. (2006) Direct submission Genbank.