ISSac3

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007759 ND Syntrophus aciditrophicus
Syntrophus aciditrophicus SB
DNA section
IS Length : 1595 bp

Ends


IR Length : 17

IRL : GTCCGTCCTGAAAAATACGGGCTGCAACCCGCATAAATAATGAAACTGTT
IRR : GTCCGTCCTGAAAAATAGGATGTGAAAAATTTTTTGGTTGATCGATTCTT

Insertion site


Left flankDirect repeatRight flankDR Length
CATAGGATGCTAAATAGGATATTGAC6
CTATCCTTACTACTTAAAAAGTCAGG6

DNA sequence

GTCCGTCCTGAAAAATACGGGCTGCAACCCGCATAAATAATGAAACTGTTCTTTGAAAACTGAAGAAAATTGTGGATTTGCAGTTGTTTCTACTCTGAAA
ATGTACTATAAGTGGCTGATATGAAAGTACATATTCCAGAAAGGCAACTTCTTATGTTCGAGACGCAGTTTTCGGATGTCCTCAACCCGGAGCATGAGTT
ACTTCGTGCCGCACGCTTGATCGATTGGGACAACATCCATGATACACTGTCTGCTTACTATAGCCTCCGGGGTCGCCAGGGGAAATCCATTCGACTGATG
GTCGGCATACACATTTTGAAACATCGCTATAACTGTTCCGACGAACGAGCGGTTGAAATGCTGCATGAAAACGCCTACTGGCAGTGCTTTTGCGGATTCA
ACAGCTTTCAGCGTGGACAGATTATGGAAGCCACATCCCTGGTGAAGTTTCGGAATCGAATCGGCACGGAAGGGATGAAAGAGATAGAGGCGGCGTTGCT
CAAGACCTGGTCCGAGATGGGCTTGGTAAAAGCCAGACGGGTGGCGGTCGATACCACTGCTCAACCCAAGAACATCGCCTATCCGACGGACGCCGATCTC
CTTTACCGGATTAGAGAGAAGATCGTCAAGCAAGTCCAAAGGGTTCGTGAGGAGGTAACCCTTCGGAAGCCCTTTCGCACCTTCAATCGATCTGGTAAAA
AACTCCTCCTCGGAATCAAGAAGTTCCACCGAAAAAATCCGGAAGGCAGGAAAGAGGAGATCAAAAAACTCAAAGAGATGACCCGTCATGTGGTCGAAAA
GACCGGAAGGGTGGTAAGCAGTCTTTACCGTCGAGGGCTCAAGGAATCGGGACGGAAACTCAATCGTCTGGTTTCTCTCGGGAAGAAAATCGTCAATCAA
ACGGAGGAGGTTCTCTCCGGCCACCTTCCTCGAAAGCGGATTTACTCCCTTCATGAGCCGAATGTGGCCGTGATCAGGAAAGGAAAGAGCCACCCCGACA
CTGAGTTTGGAGCACTTATTGCTCTTGCAAAAAACGATGACGGTTTGATCCTGTCCCATGTGGAATATCAGCATAACGTCGCCGATGTGAAGACCTTGGG
ACGGGTGATCACCGGAATCAAGACCAATGTGGGACAACGACCACGAGAAGTTGCGGCGGATCGGGGATTCGATCAATCCCTCAAAAAACAGGAAAACTGC
CGCAGACGGTGGGGCATCAAAAGAATCGCCATTCCAAAGAAGGGAAAGACGCCTCATCCGGACAGCAAAGAATCCTGGTTCAGAAAAGCCTTGAAGCAAA
GAGTCAAGATTGAACCCGTTATCGGTCATCTCAAAAGCGATCATCGCATGAATCGCTGTCGGTACAAGGGAGCGGCAGGAGATACCGTCAATGTTGTATG
GGCCACCCTCGCCTGGAACATGAAAAAGATTGTCCAACTGCATGGGCAAATGGGATAAAAGCAAGCCTTAGAGGGAATCGACAGACAGTGTAGAGAAAAT
CATTCAGAAAATCTCTTCTTTAGCCGCAATCATCTTCAGTTTTCAAAGAATCGATCAACCAAAAAATTTTTCACATCCTATTTTTCAGGACGGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1347 bp448 aa1121458+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MADMKVHIPERQLLMFETQFSDVLNPEHELLRAARLIDWDNIHDTLSAYYSLRGRQGKSIRLMVGIHILKHRYNCSDERAVEMLHENAYWQCFCGFNSFQ
RGQIMEATSLVKFRNRIGTEGMKEIEAALLKTWSEMGLVKARRVAVDTTAQPKNIAYPTDADLLYRIREKIVKQVQRVREEVTLRKPFRTFNRSGKKLLL
GIKKFHRKNPEGRKEEIKKLKEMTRHVVEKTGRVVSSLYRRGLKESGRKLNRLVSLGKKIVNQTEEVLSGHLPRKRIYSLHEPNVAVIRKGKSHPDTEFG
ALIALAKNDDGLILSHVEYQHNVADVKTLGRVITGIKTNVGQRPREVAADRGFDQSLKKQENCRRRWGIKRIAIPKKGKTPHPDSKESWFRKALKQRVKI
EPVIGHLKSDHRMNRCRYKGAAGDTVNVVWATLAWNMKKIVQLHGQMG

 

Blast result :
Comments
ISSac3 is 50% aa similar to ISCde2.
References
1] ISfinder annotation (2010)

2] McInerney,M.J., Rohlin,L., Mouttaki,H., Kim,U., Krupp,R.S., Rios-Hernandez,L., Sieber,J., Struchtemeyer,C.G., Bhattacharyya,A., Campbell,J.W. and Gunsalus,R.P. (2007) Proc. Natl. Acad. Sci. U.S.A. 104 (18), 7600-7605.

3] Gunsalus,R., Rohlin,L., Kim,U., Krupp,R., Bhattacharyya,A., Campbell,J., Mclerney,M., Moutakki,H. and Rio-Hernandez,L. (2006) Direct submission Genbank.