ISPlma1
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ND | Planctomyces maris | Planctomyces maris DSM 8797 |
DNA section
IS Length : 1790 bp
Ends
IR Length : 16/25
IRL : GTGTCTGATCCGAAAGCGTTTTGGTTCGTAAATAATAGCGTGAAATTGTA
IRR : GTGGGTGTCCCGAAAGTAGCTTCGTACAGAATTTTACGTGGTAACGCGGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ATGCGTTTTA | TAGCTA | AGGCAACGAA | 6 |
DNA sequence
GTGTCTGATCCGAAAGCGTTTTGGTTCGTAAATAATAGCGTGAAATTGTAAGAACGCTCCTCGAAGATGAGGCATTGATTCGTATTACTTGTTGAAAAGA
CCAGTAAAACGGAATCAACACATTCAATCTTCGAGGAGCCAATGATGCGAAAATCATACTCGAATCAGCTGCGACTGGACAGCGTTCCGATCGAACAGGT
AGCGTTAAATCTGGAATCGCGGGACCGCATCGTTCCCATTCTTCGCGCACTGCAGTTCCTGTATTCGGATCGCAGGCTTGTCGATGAAATACTGCAGTGG
ATTGCCGCCGACGTTAACAGCGACAGTCGCACTGACACAGGTCGAACGGGGATGGAATACTGGCATATCTGTGTGCTGGCAGCCGTGCGACTGGGCTGCA
ACTTCACCTTCGATCAGCTGCAGGATCTTGCTGAAATTCACCGCAAGCTGCGCGGCATCATGGGAGTCGGCGACTGCGATGACAGGCCCTTCAAATGGCG
AACCATCCGCAACAACATTCGACTCCTGCGACCGGAAACCATTGCACGTATCAACCAGGCCATCGTCAGTGCAGGACACACGTTTGATCCCACGGCGATC
GAAAAAGTGCGGGCCGATTCGTTCGTGATGGAAACGAACATTCATTATCCCACGGAAAGCAGTTTGCTGTACGACGGGCTGCGGAAAATCATTCCTCAGT
GTGTAAAACTGGCCGAAGCACACGGCGTGAACGGATGGCGTCAGTATGCTCACCTCTTGAAAAAAATCAAACAACTCAATCGAGACATCAATCGCATCGC
GACAAAGAAAGGCCCCCGCTACAAGAAGCGACTCCAGCCGCTTTACCGCGAACTCCTGCAGAAAGCGGCCATCTTGACGCAGCGTGCCCGCGACCTCTGC
CTGGTCACCGGCCAGCGGCTGCCGGAGAGCGCCGACCTGTTCGGGCCGAACACGCTACAGGCGTTTATCGTGCGCATAGAGCGCGTCGCGGACACGACCC
GGCGACGTATCATCCACGGCGAAGCAGTTGCCAACAGCGACAAGCTCTTCAGTATTTTCGAGCCGCACACTCAGCTTTACAAACGTGGCAAGGCCGGTCA
GCCGATGCAGTTTGGTCGACAGGTTCTGATCTTCGAAGATGCGGCTGGCTTCGTTGTGCGCGCTGTTTTAATGAAACGCAATGAAGGCGACAAACAAGTG
GCAGTCCGTGAGACGAAGTCTTTGCAAAATGATTTTCAAAACGGCGTGAAGCGCCTGTCATTCGACCGTGGATTTCATTCTCTCGACAACCAGAGGGAAC
TCGCCGAGCTTGTCGATCACCTGTGTCTTCCCAGACCCGGCGTCAAGCAGTCGGCGGTTCAACAGACCGATGACGAGTTTCGGTCAGCTCAGCAGAATCA
TTCGGGAGTGGAATCAATGATCGGAGCGTTGCAAAGTGGGAACGCGATGAAGCGATGTCGCGACCGTTCGGAGATCGGTTTTGAACGCTACCTGCAACTG
GGCATTCTGGGGCGAAACCTGCACACGCTCGGTCGGATGCTCATCGCCCGGGAGAATCAAAACGCGGCCGCCGCTCACAGTCGCCGCAAAGCGGCCTGAG
ACAGTCGCGATCGATACGAGAGAGCAAAACCAGGGAAGAACGTACGCGAGGCATTGTCTGATGAAGTCGAAATCCCCGCCAAAATCACCCGAACGCAGCC
AGCAGAGACCCGATAGCGACAATCTCCACGATCCACTACCGCCGCGTTACCACGTAAAATTCTGTACGAAGCTACTTTCGGGACACCCAC
CCAGTAAAACGGAATCAACACATTCAATCTTCGAGGAGCCAATGATGCGAAAATCATACTCGAATCAGCTGCGACTGGACAGCGTTCCGATCGAACAGGT
AGCGTTAAATCTGGAATCGCGGGACCGCATCGTTCCCATTCTTCGCGCACTGCAGTTCCTGTATTCGGATCGCAGGCTTGTCGATGAAATACTGCAGTGG
ATTGCCGCCGACGTTAACAGCGACAGTCGCACTGACACAGGTCGAACGGGGATGGAATACTGGCATATCTGTGTGCTGGCAGCCGTGCGACTGGGCTGCA
ACTTCACCTTCGATCAGCTGCAGGATCTTGCTGAAATTCACCGCAAGCTGCGCGGCATCATGGGAGTCGGCGACTGCGATGACAGGCCCTTCAAATGGCG
AACCATCCGCAACAACATTCGACTCCTGCGACCGGAAACCATTGCACGTATCAACCAGGCCATCGTCAGTGCAGGACACACGTTTGATCCCACGGCGATC
GAAAAAGTGCGGGCCGATTCGTTCGTGATGGAAACGAACATTCATTATCCCACGGAAAGCAGTTTGCTGTACGACGGGCTGCGGAAAATCATTCCTCAGT
GTGTAAAACTGGCCGAAGCACACGGCGTGAACGGATGGCGTCAGTATGCTCACCTCTTGAAAAAAATCAAACAACTCAATCGAGACATCAATCGCATCGC
GACAAAGAAAGGCCCCCGCTACAAGAAGCGACTCCAGCCGCTTTACCGCGAACTCCTGCAGAAAGCGGCCATCTTGACGCAGCGTGCCCGCGACCTCTGC
CTGGTCACCGGCCAGCGGCTGCCGGAGAGCGCCGACCTGTTCGGGCCGAACACGCTACAGGCGTTTATCGTGCGCATAGAGCGCGTCGCGGACACGACCC
GGCGACGTATCATCCACGGCGAAGCAGTTGCCAACAGCGACAAGCTCTTCAGTATTTTCGAGCCGCACACTCAGCTTTACAAACGTGGCAAGGCCGGTCA
GCCGATGCAGTTTGGTCGACAGGTTCTGATCTTCGAAGATGCGGCTGGCTTCGTTGTGCGCGCTGTTTTAATGAAACGCAATGAAGGCGACAAACAAGTG
GCAGTCCGTGAGACGAAGTCTTTGCAAAATGATTTTCAAAACGGCGTGAAGCGCCTGTCATTCGACCGTGGATTTCATTCTCTCGACAACCAGAGGGAAC
TCGCCGAGCTTGTCGATCACCTGTGTCTTCCCAGACCCGGCGTCAAGCAGTCGGCGGTTCAACAGACCGATGACGAGTTTCGGTCAGCTCAGCAGAATCA
TTCGGGAGTGGAATCAATGATCGGAGCGTTGCAAAGTGGGAACGCGATGAAGCGATGTCGCGACCGTTCGGAGATCGGTTTTGAACGCTACCTGCAACTG
GGCATTCTGGGGCGAAACCTGCACACGCTCGGTCGGATGCTCATCGCCCGGGAGAATCAAAACGCGGCCGCCGCTCACAGTCGCCGCAAAGCGGCCTGAG
ACAGTCGCGATCGATACGAGAGAGCAAAACCAGGGAAGAACGTACGCGAGGCATTGTCTGATGAAGTCGAAATCCCCGCCAAAATCACCCGAACGCAGCC
AGCAGAGACCCGATAGCGACAATCTCCACGATCCACTACCGCCGCGTTACCACGTAAAATTCTGTACGAAGCTACTTTCGGGACACCCAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1455 bp | 484 aa | 145 | 1599 | + | No |
Chemistry : DDE
ORF sequence :
MRKSYSNQLRLDSVPIEQVALNLESRDRIVPILRALQFLYSDRRLVDEILQWIAADVNSDSRTDTGRTGMEYWHICVLAAVRLGCNFTFDQLQDLAEIHR
KLRGIMGVGDCDDRPFKWRTIRNNIRLLRPETIARINQAIVSAGHTFDPTAIEKVRADSFVMETNIHYPTESSLLYDGLRKIIPQCVKLAEAHGVNGWRQ
YAHLLKKIKQLNRDINRIATKKGPRYKKRLQPLYRELLQKAAILTQRARDLCLVTGQRLPESADLFGPNTLQAFIVRIERVADTTRRRIIHGEAVANSDK
LFSIFEPHTQLYKRGKAGQPMQFGRQVLIFEDAAGFVVRAVLMKRNEGDKQVAVRETKSLQNDFQNGVKRLSFDRGFHSLDNQRELAELVDHLCLPRPGV
KQSAVQQTDDEFRSAQQNHSGVESMIGALQSGNAMKRCRDRSEIGFERYLQLGILGRNLHTLGRMLIARENQNAAAAHSRRKAA
KLRGIMGVGDCDDRPFKWRTIRNNIRLLRPETIARINQAIVSAGHTFDPTAIEKVRADSFVMETNIHYPTESSLLYDGLRKIIPQCVKLAEAHGVNGWRQ
YAHLLKKIKQLNRDINRIATKKGPRYKKRLQPLYRELLQKAAILTQRARDLCLVTGQRLPESADLFGPNTLQAFIVRIERVADTTRRRIIHGEAVANSDK
LFSIFEPHTQLYKRGKAGQPMQFGRQVLIFEDAAGFVVRAVLMKRNEGDKQVAVRETKSLQNDFQNGVKRLSFDRGFHSLDNQRELAELVDHLCLPRPGV
KQSAVQQTDDEFRSAQQNHSGVESMIGALQSGNAMKRCRDRSEIGFERYLQLGILGRNLHTLGRMLIARENQNAAAAHSRRKAA
Blast result :
Comments
Genome in progress. Accession number: NZ_ABCE01000016.
ISPlma1 is 55% aa similar to ISCku10.
ISPlma1 is 55% aa similar to ISCku10.
References
1] ISfinder annotation (2010).
2] Amann,R., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission Genbank.
2] Amann,R., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission Genbank.