ISNha7

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007964 ND Nitrobacter hamburgensis
Nitrobacter hamburgensis X14
DNA section
IS Length : 1302 bp

Ends


IR Length : 19/20

IRL : CAGGCTGTTGAAGAAGTCTCTGGCGCAGCGGTTCTGGGCATGATTCTCTT
IRR : CAGGCTGTTGAAGAAGTTTCCCACGGAGACGGATATGGAATGGAGTCAGC

Insertion site


Left flankDirect repeatRight flankDR Length
CCTCCGAAAGCTAGAGCGTTTTCG4
TAACCTTGCTCTAGAGCCTTTCCG4
TCGAAACTCCCTAGCGCTTGGTGC4
ACCCGAGGCTCTAGAGCCTTTCCG4
GCGAAAAGCTTTAGAGCCGCGTTT4
AAGTCATCATTTAGAGCGTTTTCG4
CGGATTCCACTTAGAGCGTTTTCG4
ATTTCTGAACCTAGAGCCTTTTCG4
GGCTTGCGAGCTAGAGCGTTTTCG4
CGAAAAGGCTCTAGGCCCTTTTTT4
CGAAAAGGCTCTAGTGCGACATGA4
CGAAAAGGCTCTAGGCCTCGCGAT4
ATCATGTGGCCTAGAGATTGGCGC4
CGAAAACGCTCTAGTTGTCGTCGC4
CAGGCGTAGCCTAGAGCGTTTTCG4
CGGAAAGGCTCTAGGCGTAGGCGA4
CGGCCTGAACCTAGAGCCTTTCCG4
CGAAAACGCTCTAGAACTGAATCC4
TGCGTTAATCCTAGAGCGTTTTCG4
ATGGCGAGCCCTAGCTAATGCTTAATATCAC0
GCCGTCGCGCCTAGAGCCTTTCCG4

DNA sequence

CAGGCTGTTGAAGAAGTCTCTGGCGCAGCGGTTCTGGGCATGATTCTCTTGATGCGGATGCGTCGAGGGGGGAGCGATGCGGGGAAGCGACGAACGGTCA
GGCTCGCTGTTCAGCTATGTGGACTTGGAGGCTCGGATTCGCTCCGACCATCCGCTGCGAACGATCCGACAGATCGCGAACGCGGCGTTGAATGATCTGT
CGAGGGACTTTGACAAGCTCTACACGGCGTTCGGCCGTCCCTCGATCGCACCGGAGAAGCTGCTTCGGGCAATGCTGCTGCAGGCATTCTACGGGATCCG
CTCGGAACGGCAGTTGATGGAGCGGCTGGAGTTCGACCTGCTGTTGCGCTGGTTCGTGGGCTTGGGCGTGGACGACCCGGTGTGGGACCACTCGACCTTC
TCGAAGAACCGCGACCGATTGCTTGAAGGTGAGATCGCCGCGAAGTTCTTGAACGCGCTGATGGGGCAGCACCAGGTCAAGCGGCTGTTATCAAGCGAGC
ATTTTTCGGTCGACGGCACGCTGATCGAGGCGTGGGCATCGATCAAGAGCTTCCGGCGCAAGGACGGCGGTGACCAGGACAGTGATGGACCGGGACGCAA
CGCCGAGCGCAGTTTCCACAACGAGAAGCGCTGCAACGAGACGCATCAGAGCACGACCGATCCCGAGGCACGGCTCTATAAGAAGGGCGGCGGCCAGCCG
GCGAAGCTTTGCTACATCGGCCATGCCCTGATGGAGAACCGCAACGGACTGGCGGTGCTGGGTGGCGTGAGCCGGGCGACCGGAACGGCGGAGCGGGATC
AGGCGTTGGCGCTGATCGACTGCCACCGCGGCCAAAGCGAGCGGCGGATCACGCTGGGCGCCGACAAGGCCTATGACGTCACCGCATTCGTCGAGGACTT
AAGACGGCGTTCGGTCACGCCGCACATCGCCATCGACGGGCATTTGAGCAAGACCGGAAAGCCGCGCAAGACCGCGATCGACCAGAGGACTCTCCGTCAT
GCCGGATATGCCGTCAGCCAACGCTGTCGCAAGCGCATCGAGGAGGTGTTCGGCTGGATCAAGGCCTCCGCCGGACTTGCCAAGATCAAGCTGCGAGGCC
GCGACCGCGTCAACGCCACCTTCACCCTGGCGCTGGCGGCCTACAACCTGATCCGCTTGCCCAAACTCCTGGCAGCCGCCGCGTGAAACACAAGTCGTGC
ACCGTCAAGATGCTCGATCAGGACCCTGATGGTGGCGCCGCCCGCAGATCACGCTGACTCCATTCCATATCCGTCTCCGTGGGAAACTTCTTCAACAGCC
TG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1110 bp369 aa771186+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGSDERSGSLFSYVDLEARIRSDHPLRTIRQIANAALNDLSRDFDKLYTAFGRPSIAPEKLLRAMLLQAFYGIRSERQLMERLEFDLLLRWFVGLGVDD
PVWDHSTFSKNRDRLLEGEIAAKFLNALMGQHQVKRLLSSEHFSVDGTLIEAWASIKSFRRKDGGDQDSDGPGRNAERSFHNEKRCNETHQSTTDPEARL
YKKGGGQPAKLCYIGHALMENRNGLAVLGGVSRATGTAERDQALALIDCHRGQSERRITLGADKAYDVTAFVEDLRRRSVTPHIAIDGHLSKTGKPRKTA
IDQRTLRHAGYAVSQRCRKRIEEVFGWIKASAGLAKIKLRGRDRVNATFTLALAAYNLIRLPKLLAAAA

 

Blast result :
Comments
ISNha7 is 75% aa similar to ISRsp5.
References
1] ISfinder annotation (2010)
2] Starkenburg,S.R., Larimer,F.W., Stein,L.Y., Klotz,M.G., Chain,P.S., Sayavedra-Soto,L.A., Poret-Peterson,A.T., Gentry,M.E., Arp,D.J., Ward,B. and Bottomley,P.J. (2008) Appl. Environ. Microbiol. 74 (9), 2852-2863.