ISNha7
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007964 | ND | Nitrobacter hamburgensis | Nitrobacter hamburgensis X14 |
DNA section
IS Length : 1302 bp
Ends
IR Length : 19/20
IRL : CAGGCTGTTGAAGAAGTCTCTGGCGCAGCGGTTCTGGGCATGATTCTCTT
IRR : CAGGCTGTTGAAGAAGTTTCCCACGGAGACGGATATGGAATGGAGTCAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCTCCGAAAG | CTAG | AGCGTTTTCG | 4 |
TAACCTTGCT | CTAG | AGCCTTTCCG | 4 |
TCGAAACTCC | CTAG | CGCTTGGTGC | 4 |
ACCCGAGGCT | CTAG | AGCCTTTCCG | 4 |
GCGAAAAGCT | TTAG | AGCCGCGTTT | 4 |
AAGTCATCAT | TTAG | AGCGTTTTCG | 4 |
CGGATTCCAC | TTAG | AGCGTTTTCG | 4 |
ATTTCTGAAC | CTAG | AGCCTTTTCG | 4 |
GGCTTGCGAG | CTAG | AGCGTTTTCG | 4 |
CGAAAAGGCT | CTAG | GCCCTTTTTT | 4 |
CGAAAAGGCT | CTAG | TGCGACATGA | 4 |
CGAAAAGGCT | CTAG | GCCTCGCGAT | 4 |
ATCATGTGGC | CTAG | AGATTGGCGC | 4 |
CGAAAACGCT | CTAG | TTGTCGTCGC | 4 |
CAGGCGTAGC | CTAG | AGCGTTTTCG | 4 |
CGGAAAGGCT | CTAG | GCGTAGGCGA | 4 |
CGGCCTGAAC | CTAG | AGCCTTTCCG | 4 |
CGAAAACGCT | CTAG | AACTGAATCC | 4 |
TGCGTTAATC | CTAG | AGCGTTTTCG | 4 |
ATGGCGAGCCCTAG | CTAATGCTTAATATCAC | 0 | |
GCCGTCGCGC | CTAG | AGCCTTTCCG | 4 |
DNA sequence
CAGGCTGTTGAAGAAGTCTCTGGCGCAGCGGTTCTGGGCATGATTCTCTTGATGCGGATGCGTCGAGGGGGGAGCGATGCGGGGAAGCGACGAACGGTCA
GGCTCGCTGTTCAGCTATGTGGACTTGGAGGCTCGGATTCGCTCCGACCATCCGCTGCGAACGATCCGACAGATCGCGAACGCGGCGTTGAATGATCTGT
CGAGGGACTTTGACAAGCTCTACACGGCGTTCGGCCGTCCCTCGATCGCACCGGAGAAGCTGCTTCGGGCAATGCTGCTGCAGGCATTCTACGGGATCCG
CTCGGAACGGCAGTTGATGGAGCGGCTGGAGTTCGACCTGCTGTTGCGCTGGTTCGTGGGCTTGGGCGTGGACGACCCGGTGTGGGACCACTCGACCTTC
TCGAAGAACCGCGACCGATTGCTTGAAGGTGAGATCGCCGCGAAGTTCTTGAACGCGCTGATGGGGCAGCACCAGGTCAAGCGGCTGTTATCAAGCGAGC
ATTTTTCGGTCGACGGCACGCTGATCGAGGCGTGGGCATCGATCAAGAGCTTCCGGCGCAAGGACGGCGGTGACCAGGACAGTGATGGACCGGGACGCAA
CGCCGAGCGCAGTTTCCACAACGAGAAGCGCTGCAACGAGACGCATCAGAGCACGACCGATCCCGAGGCACGGCTCTATAAGAAGGGCGGCGGCCAGCCG
GCGAAGCTTTGCTACATCGGCCATGCCCTGATGGAGAACCGCAACGGACTGGCGGTGCTGGGTGGCGTGAGCCGGGCGACCGGAACGGCGGAGCGGGATC
AGGCGTTGGCGCTGATCGACTGCCACCGCGGCCAAAGCGAGCGGCGGATCACGCTGGGCGCCGACAAGGCCTATGACGTCACCGCATTCGTCGAGGACTT
AAGACGGCGTTCGGTCACGCCGCACATCGCCATCGACGGGCATTTGAGCAAGACCGGAAAGCCGCGCAAGACCGCGATCGACCAGAGGACTCTCCGTCAT
GCCGGATATGCCGTCAGCCAACGCTGTCGCAAGCGCATCGAGGAGGTGTTCGGCTGGATCAAGGCCTCCGCCGGACTTGCCAAGATCAAGCTGCGAGGCC
GCGACCGCGTCAACGCCACCTTCACCCTGGCGCTGGCGGCCTACAACCTGATCCGCTTGCCCAAACTCCTGGCAGCCGCCGCGTGAAACACAAGTCGTGC
ACCGTCAAGATGCTCGATCAGGACCCTGATGGTGGCGCCGCCCGCAGATCACGCTGACTCCATTCCATATCCGTCTCCGTGGGAAACTTCTTCAACAGCC
TG
GGCTCGCTGTTCAGCTATGTGGACTTGGAGGCTCGGATTCGCTCCGACCATCCGCTGCGAACGATCCGACAGATCGCGAACGCGGCGTTGAATGATCTGT
CGAGGGACTTTGACAAGCTCTACACGGCGTTCGGCCGTCCCTCGATCGCACCGGAGAAGCTGCTTCGGGCAATGCTGCTGCAGGCATTCTACGGGATCCG
CTCGGAACGGCAGTTGATGGAGCGGCTGGAGTTCGACCTGCTGTTGCGCTGGTTCGTGGGCTTGGGCGTGGACGACCCGGTGTGGGACCACTCGACCTTC
TCGAAGAACCGCGACCGATTGCTTGAAGGTGAGATCGCCGCGAAGTTCTTGAACGCGCTGATGGGGCAGCACCAGGTCAAGCGGCTGTTATCAAGCGAGC
ATTTTTCGGTCGACGGCACGCTGATCGAGGCGTGGGCATCGATCAAGAGCTTCCGGCGCAAGGACGGCGGTGACCAGGACAGTGATGGACCGGGACGCAA
CGCCGAGCGCAGTTTCCACAACGAGAAGCGCTGCAACGAGACGCATCAGAGCACGACCGATCCCGAGGCACGGCTCTATAAGAAGGGCGGCGGCCAGCCG
GCGAAGCTTTGCTACATCGGCCATGCCCTGATGGAGAACCGCAACGGACTGGCGGTGCTGGGTGGCGTGAGCCGGGCGACCGGAACGGCGGAGCGGGATC
AGGCGTTGGCGCTGATCGACTGCCACCGCGGCCAAAGCGAGCGGCGGATCACGCTGGGCGCCGACAAGGCCTATGACGTCACCGCATTCGTCGAGGACTT
AAGACGGCGTTCGGTCACGCCGCACATCGCCATCGACGGGCATTTGAGCAAGACCGGAAAGCCGCGCAAGACCGCGATCGACCAGAGGACTCTCCGTCAT
GCCGGATATGCCGTCAGCCAACGCTGTCGCAAGCGCATCGAGGAGGTGTTCGGCTGGATCAAGGCCTCCGCCGGACTTGCCAAGATCAAGCTGCGAGGCC
GCGACCGCGTCAACGCCACCTTCACCCTGGCGCTGGCGGCCTACAACCTGATCCGCTTGCCCAAACTCCTGGCAGCCGCCGCGTGAAACACAAGTCGTGC
ACCGTCAAGATGCTCGATCAGGACCCTGATGGTGGCGCCGCCCGCAGATCACGCTGACTCCATTCCATATCCGTCTCCGTGGGAAACTTCTTCAACAGCC
TG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1110 bp | 369 aa | 77 | 1186 | + | No |
Chemistry : DDE
ORF sequence :
MRGSDERSGSLFSYVDLEARIRSDHPLRTIRQIANAALNDLSRDFDKLYTAFGRPSIAPEKLLRAMLLQAFYGIRSERQLMERLEFDLLLRWFVGLGVDD
PVWDHSTFSKNRDRLLEGEIAAKFLNALMGQHQVKRLLSSEHFSVDGTLIEAWASIKSFRRKDGGDQDSDGPGRNAERSFHNEKRCNETHQSTTDPEARL
YKKGGGQPAKLCYIGHALMENRNGLAVLGGVSRATGTAERDQALALIDCHRGQSERRITLGADKAYDVTAFVEDLRRRSVTPHIAIDGHLSKTGKPRKTA
IDQRTLRHAGYAVSQRCRKRIEEVFGWIKASAGLAKIKLRGRDRVNATFTLALAAYNLIRLPKLLAAAA
PVWDHSTFSKNRDRLLEGEIAAKFLNALMGQHQVKRLLSSEHFSVDGTLIEAWASIKSFRRKDGGDQDSDGPGRNAERSFHNEKRCNETHQSTTDPEARL
YKKGGGQPAKLCYIGHALMENRNGLAVLGGVSRATGTAERDQALALIDCHRGQSERRITLGADKAYDVTAFVEDLRRRSVTPHIAIDGHLSKTGKPRKTA
IDQRTLRHAGYAVSQRCRKRIEEVFGWIKASAGLAKIKLRGRDRVNATFTLALAAYNLIRLPKLLAAAA
Blast result :
Comments
ISNha7 is 75% aa similar to ISRsp5.
References
1] ISfinder annotation (2010)
2] Starkenburg,S.R., Larimer,F.W., Stein,L.Y., Klotz,M.G., Chain,P.S., Sayavedra-Soto,L.A., Poret-Peterson,A.T., Gentry,M.E., Arp,D.J., Ward,B. and Bottomley,P.J. (2008) Appl. Environ. Microbiol. 74 (9), 2852-2863.
2] Starkenburg,S.R., Larimer,F.W., Stein,L.Y., Klotz,M.G., Chain,P.S., Sayavedra-Soto,L.A., Poret-Peterson,A.T., Gentry,M.E., Arp,D.J., Ward,B. and Bottomley,P.J. (2008) Appl. Environ. Microbiol. 74 (9), 2852-2863.