ISBrsp7

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009485 ND Bradyrhizobium sp.
Bradyrhizobium sp. BTAi1
DNA section
IS Length : 1292 bp

Ends


IR Length : 17/18

IRL : CAGGCTGTTGAAGAAGTCAGTGGCGTCGGGCCTCTCGTCATGATTCCTTA
IRR : CAGGCCGTTGAAGAAGTCTGCTTTCGGTCGGATTTGAGTCTCCGGGTCGG

Insertion site


Left flankDirect repeatRight flankDR Length
GTCAGACGCCCTAGAACATTCCTG4
GCCGCCTTAGCTAGGTCTTC0
TCCACATCGTCTAGAGCATGATCC4

DNA sequence

CAGGCTGTTGAAGAAGTCAGTGGCGTCGGGCCTCTCGTCATGATTCCTTAGGTCCGGCTGGATTGAGGGGCGGACGATGCGAGGAAGCGACGAACGGACG
GGATCCCTGTTCAGCTATGTAGATTTGGAGGATCGGGTTCGTGCCGACCACCCGCTGCGGACAATAAGGCGGCTTGCCAATGCGGCACTGGCTGACCTTT
CAAGGGACTTCGAAGCGCTCTACACCGCGTTCGGCCGGCCGTCGATCGCGCCGGAGAAACTGCTGCGGGCGATGCTGCTGCAGGCGTTTTACGGCATTCG
CTCGGAGCGGCAATTGATGGAGCGGCTGGACTTCGACCTGCTGTTCCGCTGGTTTGTCGGCCTGGGCATGGACGACGCGGTATGGGATCATTCGACCTTC
TCCAAGAACCGTGACCGGCTGCTGGAGGGCGAGATCGCGGCGAAGTTTCTGACGGCGCTGCTGGCTCGGCCCGAGGTGAAGCGGCTGCTGTCGAGCGACC
ACTTCTCGGTCGACGGCACGCTGATCGAGGCGTGGGCGTCGATCAAAAGCTTCCGCCGCAAGGACGGCGGCGATCAGGACAATGACGGTCCGGGCCGCAA
CGCCGAGCGCAGCTTCCACAAGGAAAAGCGCAGCAACGAGACGCATCAGAGCACGACCGATCCCGAGGCGCGGCTGTACAAGAAGGGCGAGGGCCAGCCG
GCGAAGCTCTGCTACATGGCTCATACCTTAATGGAGAACCGCAATGGCCTCGCCGTGCTGGGCGGCGTCAGCCAGGCAACCGGCACCGCGGAGCGGGATC
AGGCGCTGGAACTGATCGACCGCCATCGCGGCGATCGCACGCGCCGGATCACGCTGGGGGCCGACAAGGCTTACGACGTCACCGACTTTGTCGGAGAGCT
GAGAAGCCGTTCGGTGACGCCGCACATCGCCATCGACGGGCATTTGAGCAAGACCGGCAAGCCACGCAAGACCGCGATCGACCGGAGAACGCTGCGTCAC
GCCGGCTACGCGGTCAGCCAACGCTGCCGCAAGCGCATCGAGGAGGTGTTCGGCTGGATCAAGGCCTCGGCCGGCCTTGCCAAGGTCAAGTTCCGAGGCC
GCGCCCGCGTCGATGCCGCCTTCAAGCTGGCGCTGGCGGCCTACAATCTGATCCGCCTGCCAAGACTGTTGGAGGCAACCGCATGAGGCACCTCGGCTCA
GGGTCCAAGCGCCGCACAAAGCCGACACTCGGCGCTTACCAGCCGACCCGGAGACTCAAATCCGACCGAAAGCAGACTTCTTCAACGGCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1110 bp369 aa771186+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGSDERTGSLFSYVDLEDRVRADHPLRTIRRLANAALADLSRDFEALYTAFGRPSIAPEKLLRAMLLQAFYGIRSERQLMERLDFDLLFRWFVGLGMDD
AVWDHSTFSKNRDRLLEGEIAAKFLTALLARPEVKRLLSSDHFSVDGTLIEAWASIKSFRRKDGGDQDNDGPGRNAERSFHKEKRSNETHQSTTDPEARL
YKKGEGQPAKLCYMAHTLMENRNGLAVLGGVSQATGTAERDQALELIDRHRGDRTRRITLGADKAYDVTDFVGELRSRSVTPHIAIDGHLSKTGKPRKTA
IDRRTLRHAGYAVSQRCRKRIEEVFGWIKASAGLAKVKFRGRARVDAAFKLALAAYNLIRLPRLLEATA

 

Blast result :
Comments
ISBrsp7 is 76% aa similar to ISRsp5.
References
1] ISfinder annotation (2010)
2] Giraud,E., Moulin,L., Vallenet,D., Barbe,V., Cytryn,E., Avarre,J.C., Jaubert,M., Simon,D., Cartieaux,F., Prin,Y., Bena,G., Hannibal,L., Fardoux,J., Kojadinovic,M., Vuillet,L., Lajus,A., Cruveiller,S., Rouy,Z., Mangenot,S., Segurens,B., Dossat,C., Franck,W.L., Chang,W.S., Saunders,E., Bruce,D., Richardson,P., Normand,P., Dreyfus,B., Pignol,D., Stacey,G., Emerich,D., Vermeglio,A., Medigue,C. and Sadowsky,M. (2007) Science 316 (5829), 1307-1312.