ISBrsp7
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009485 | ND | Bradyrhizobium sp. | Bradyrhizobium sp. BTAi1 |
DNA section
IS Length : 1292 bp
Ends
IR Length : 17/18
IRL : CAGGCTGTTGAAGAAGTCAGTGGCGTCGGGCCTCTCGTCATGATTCCTTA
IRR : CAGGCCGTTGAAGAAGTCTGCTTTCGGTCGGATTTGAGTCTCCGGGTCGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTCAGACGCC | CTAG | AACATTCCTG | 4 |
GCCGCCTTAG | CTAGGTCTTC | 0 | |
TCCACATCGT | CTAG | AGCATGATCC | 4 |
DNA sequence
CAGGCTGTTGAAGAAGTCAGTGGCGTCGGGCCTCTCGTCATGATTCCTTAGGTCCGGCTGGATTGAGGGGCGGACGATGCGAGGAAGCGACGAACGGACG
GGATCCCTGTTCAGCTATGTAGATTTGGAGGATCGGGTTCGTGCCGACCACCCGCTGCGGACAATAAGGCGGCTTGCCAATGCGGCACTGGCTGACCTTT
CAAGGGACTTCGAAGCGCTCTACACCGCGTTCGGCCGGCCGTCGATCGCGCCGGAGAAACTGCTGCGGGCGATGCTGCTGCAGGCGTTTTACGGCATTCG
CTCGGAGCGGCAATTGATGGAGCGGCTGGACTTCGACCTGCTGTTCCGCTGGTTTGTCGGCCTGGGCATGGACGACGCGGTATGGGATCATTCGACCTTC
TCCAAGAACCGTGACCGGCTGCTGGAGGGCGAGATCGCGGCGAAGTTTCTGACGGCGCTGCTGGCTCGGCCCGAGGTGAAGCGGCTGCTGTCGAGCGACC
ACTTCTCGGTCGACGGCACGCTGATCGAGGCGTGGGCGTCGATCAAAAGCTTCCGCCGCAAGGACGGCGGCGATCAGGACAATGACGGTCCGGGCCGCAA
CGCCGAGCGCAGCTTCCACAAGGAAAAGCGCAGCAACGAGACGCATCAGAGCACGACCGATCCCGAGGCGCGGCTGTACAAGAAGGGCGAGGGCCAGCCG
GCGAAGCTCTGCTACATGGCTCATACCTTAATGGAGAACCGCAATGGCCTCGCCGTGCTGGGCGGCGTCAGCCAGGCAACCGGCACCGCGGAGCGGGATC
AGGCGCTGGAACTGATCGACCGCCATCGCGGCGATCGCACGCGCCGGATCACGCTGGGGGCCGACAAGGCTTACGACGTCACCGACTTTGTCGGAGAGCT
GAGAAGCCGTTCGGTGACGCCGCACATCGCCATCGACGGGCATTTGAGCAAGACCGGCAAGCCACGCAAGACCGCGATCGACCGGAGAACGCTGCGTCAC
GCCGGCTACGCGGTCAGCCAACGCTGCCGCAAGCGCATCGAGGAGGTGTTCGGCTGGATCAAGGCCTCGGCCGGCCTTGCCAAGGTCAAGTTCCGAGGCC
GCGCCCGCGTCGATGCCGCCTTCAAGCTGGCGCTGGCGGCCTACAATCTGATCCGCCTGCCAAGACTGTTGGAGGCAACCGCATGAGGCACCTCGGCTCA
GGGTCCAAGCGCCGCACAAAGCCGACACTCGGCGCTTACCAGCCGACCCGGAGACTCAAATCCGACCGAAAGCAGACTTCTTCAACGGCCTG
GGATCCCTGTTCAGCTATGTAGATTTGGAGGATCGGGTTCGTGCCGACCACCCGCTGCGGACAATAAGGCGGCTTGCCAATGCGGCACTGGCTGACCTTT
CAAGGGACTTCGAAGCGCTCTACACCGCGTTCGGCCGGCCGTCGATCGCGCCGGAGAAACTGCTGCGGGCGATGCTGCTGCAGGCGTTTTACGGCATTCG
CTCGGAGCGGCAATTGATGGAGCGGCTGGACTTCGACCTGCTGTTCCGCTGGTTTGTCGGCCTGGGCATGGACGACGCGGTATGGGATCATTCGACCTTC
TCCAAGAACCGTGACCGGCTGCTGGAGGGCGAGATCGCGGCGAAGTTTCTGACGGCGCTGCTGGCTCGGCCCGAGGTGAAGCGGCTGCTGTCGAGCGACC
ACTTCTCGGTCGACGGCACGCTGATCGAGGCGTGGGCGTCGATCAAAAGCTTCCGCCGCAAGGACGGCGGCGATCAGGACAATGACGGTCCGGGCCGCAA
CGCCGAGCGCAGCTTCCACAAGGAAAAGCGCAGCAACGAGACGCATCAGAGCACGACCGATCCCGAGGCGCGGCTGTACAAGAAGGGCGAGGGCCAGCCG
GCGAAGCTCTGCTACATGGCTCATACCTTAATGGAGAACCGCAATGGCCTCGCCGTGCTGGGCGGCGTCAGCCAGGCAACCGGCACCGCGGAGCGGGATC
AGGCGCTGGAACTGATCGACCGCCATCGCGGCGATCGCACGCGCCGGATCACGCTGGGGGCCGACAAGGCTTACGACGTCACCGACTTTGTCGGAGAGCT
GAGAAGCCGTTCGGTGACGCCGCACATCGCCATCGACGGGCATTTGAGCAAGACCGGCAAGCCACGCAAGACCGCGATCGACCGGAGAACGCTGCGTCAC
GCCGGCTACGCGGTCAGCCAACGCTGCCGCAAGCGCATCGAGGAGGTGTTCGGCTGGATCAAGGCCTCGGCCGGCCTTGCCAAGGTCAAGTTCCGAGGCC
GCGCCCGCGTCGATGCCGCCTTCAAGCTGGCGCTGGCGGCCTACAATCTGATCCGCCTGCCAAGACTGTTGGAGGCAACCGCATGAGGCACCTCGGCTCA
GGGTCCAAGCGCCGCACAAAGCCGACACTCGGCGCTTACCAGCCGACCCGGAGACTCAAATCCGACCGAAAGCAGACTTCTTCAACGGCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1110 bp | 369 aa | 77 | 1186 | + | No |
Chemistry : DDE
ORF sequence :
MRGSDERTGSLFSYVDLEDRVRADHPLRTIRRLANAALADLSRDFEALYTAFGRPSIAPEKLLRAMLLQAFYGIRSERQLMERLDFDLLFRWFVGLGMDD
AVWDHSTFSKNRDRLLEGEIAAKFLTALLARPEVKRLLSSDHFSVDGTLIEAWASIKSFRRKDGGDQDNDGPGRNAERSFHKEKRSNETHQSTTDPEARL
YKKGEGQPAKLCYMAHTLMENRNGLAVLGGVSQATGTAERDQALELIDRHRGDRTRRITLGADKAYDVTDFVGELRSRSVTPHIAIDGHLSKTGKPRKTA
IDRRTLRHAGYAVSQRCRKRIEEVFGWIKASAGLAKVKFRGRARVDAAFKLALAAYNLIRLPRLLEATA
AVWDHSTFSKNRDRLLEGEIAAKFLTALLARPEVKRLLSSDHFSVDGTLIEAWASIKSFRRKDGGDQDNDGPGRNAERSFHKEKRSNETHQSTTDPEARL
YKKGEGQPAKLCYMAHTLMENRNGLAVLGGVSQATGTAERDQALELIDRHRGDRTRRITLGADKAYDVTDFVGELRSRSVTPHIAIDGHLSKTGKPRKTA
IDRRTLRHAGYAVSQRCRKRIEEVFGWIKASAGLAKVKFRGRARVDAAFKLALAAYNLIRLPRLLEATA
Blast result :
Comments
ISBrsp7 is 76% aa similar to ISRsp5.
References
1] ISfinder annotation (2010)
2] Giraud,E., Moulin,L., Vallenet,D., Barbe,V., Cytryn,E., Avarre,J.C., Jaubert,M., Simon,D., Cartieaux,F., Prin,Y., Bena,G., Hannibal,L., Fardoux,J., Kojadinovic,M., Vuillet,L., Lajus,A., Cruveiller,S., Rouy,Z., Mangenot,S., Segurens,B., Dossat,C., Franck,W.L., Chang,W.S., Saunders,E., Bruce,D., Richardson,P., Normand,P., Dreyfus,B., Pignol,D., Stacey,G., Emerich,D., Vermeglio,A., Medigue,C. and Sadowsky,M. (2007) Science 316 (5829), 1307-1312.
2] Giraud,E., Moulin,L., Vallenet,D., Barbe,V., Cytryn,E., Avarre,J.C., Jaubert,M., Simon,D., Cartieaux,F., Prin,Y., Bena,G., Hannibal,L., Fardoux,J., Kojadinovic,M., Vuillet,L., Lajus,A., Cruveiller,S., Rouy,Z., Mangenot,S., Segurens,B., Dossat,C., Franck,W.L., Chang,W.S., Saunders,E., Bruce,D., Richardson,P., Normand,P., Dreyfus,B., Pignol,D., Stacey,G., Emerich,D., Vermeglio,A., Medigue,C. and Sadowsky,M. (2007) Science 316 (5829), 1307-1312.