ISGlo5
- Family IS5
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_010814 | ND | Geobacter lovleyi | Geobacter lovleyi SZ |
DNA section
IS Length : 1325 bp
Ends
IR Length : 11/13
IRL : CAGGCTGTTGAAATTGAAGTAGTAAAAACAGCCTTTTTTTAGTATATTTG
IRR : CAGGTCGTTGAAAATCGGCTCGATTTGAGTCCGTTCCAGTCAGCCGGCTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTCAGCCATATCAA | CTAGTGATACCAATA | 0 | |
| ACGCTCTCTT | ATAA | GATCAAAAAT | 4 |
| GTCAGCCATATCAA | CTAAGTCATTAACA | 0 | |
| TGACCTTTTT | TTAA | CTCCTTTTTA | 4 |
| GTCAGCCATATCAA | TTAAATTACATGGC | 0 | |
| AACAACGTTT | TTAA | GTACCAGAAG | 4 |
| ACTGAGTGAG | CTAG | GCTCAATTGT | 4 |
| TGTTGGTTTC | CTAT | AGCTCTATTA | 4 |
| AAAGATTGCA | CTAA | AAGTGCATTA | 4 |
DNA sequence
CAGGCTGTTGAAATTGAAGTAGTAAAAACAGCCTTTTTTTAGTATATTTGTGCGCACAACACTCCGGTTTGATTGAGGAAAGTTATGCGCGGAACTGATG
TCCAGAATGAAGCTCTTTTTGCCTATGTGACGCCTGAGTCATTTGTACCCAAGGATCATCCCCTGCGTGCTATTCGCAGTATGGCTGATCAGGCACTTTC
CGAGATGAGCCCGCTCTTTGACAGCATGTATGCCGATTCCGGTCGTTCTTCCATTGCCCCGGAGAAGCTGCTGAAAGCACAACTGCTGATGATACTGTTC
AGCATCCGCAGTAACCGGCAACTGGTAGAGCAGATCCGCTACAACTTCCTGTACCGCTGGTTCCTTGGCATGGGACTGGATGATGAAATCTGGGATCACT
CCAGCTTCACTAAGAACCATGAACGGTTAATTGGCTCTGATGTGGCCGCAGAGTTTCTATCCCGTATCCTTGCTCAGGCAGAGCGCAAGCGTCTCCTGTC
CCGAGAGCACTTCACCGTTGACGGCACCTTGATTGAGGCATGGGCCTCCATCAAGAGCTTCAAGCCCAAAGACGGTCCGCCATCTGCCGGTGGTGGCAAA
AATAAATCAGTTGATTTCAAAGGCAAACAACTCAAAAACGACACTCATTCTTCCAGCACTGATCCAAACGCCAGACTGTACCGCAAGGGCAACACCAAAG
AGGCCAAGCTCTGCTACCAGGGACACACCTTGATGGAGAATAGAAACGGTCTGATCGTCAAGACCAGCGTCACCACGGCAACCGGTACCGGAGAGCGTGA
AGCCGCCAAGGCCATGATCAGACAATTGCCTCGTACTACCCGGCGTATCACCGTCGGTGCAGACAAAGGATACGACACCGAAGGCTTTGTCAAAGAGCTC
AGGCAAATCAACGTCACGCCGCATGTGGCTCAGAACAACACCAGAAGGAAATCAGGCATTGATGGCAGAACCACCGCTCATCCGAATTACAGCATAAGCC
AAAGGATCAGAAAACGGATCGAGGAAGGCTTTGGCTGGATGAAGACCATCGGCAGACTGAGAAAGACCATGTATCGAGGCATTGAGAAGATTGCCTGGCA
GCTTGATCTCCATGCAGCGGCCTACAACCTGGTACGCATGAAAAACCTGGGGCTCGGTGTCACCTGAGAGCGGCAAATCGGCCTTGGGGTGCATCAAGCA
TAGGCAAATAAAGTTGAAAAAGAGCAACACAACCGAAAACAGCGACATCTGAACAGCGAAGCAAACTTAAAAAATCAGCCGGCTGACTGGAACGGACTCA
AATCGAGCCGATTTTCAACGACCTG
TCCAGAATGAAGCTCTTTTTGCCTATGTGACGCCTGAGTCATTTGTACCCAAGGATCATCCCCTGCGTGCTATTCGCAGTATGGCTGATCAGGCACTTTC
CGAGATGAGCCCGCTCTTTGACAGCATGTATGCCGATTCCGGTCGTTCTTCCATTGCCCCGGAGAAGCTGCTGAAAGCACAACTGCTGATGATACTGTTC
AGCATCCGCAGTAACCGGCAACTGGTAGAGCAGATCCGCTACAACTTCCTGTACCGCTGGTTCCTTGGCATGGGACTGGATGATGAAATCTGGGATCACT
CCAGCTTCACTAAGAACCATGAACGGTTAATTGGCTCTGATGTGGCCGCAGAGTTTCTATCCCGTATCCTTGCTCAGGCAGAGCGCAAGCGTCTCCTGTC
CCGAGAGCACTTCACCGTTGACGGCACCTTGATTGAGGCATGGGCCTCCATCAAGAGCTTCAAGCCCAAAGACGGTCCGCCATCTGCCGGTGGTGGCAAA
AATAAATCAGTTGATTTCAAAGGCAAACAACTCAAAAACGACACTCATTCTTCCAGCACTGATCCAAACGCCAGACTGTACCGCAAGGGCAACACCAAAG
AGGCCAAGCTCTGCTACCAGGGACACACCTTGATGGAGAATAGAAACGGTCTGATCGTCAAGACCAGCGTCACCACGGCAACCGGTACCGGAGAGCGTGA
AGCCGCCAAGGCCATGATCAGACAATTGCCTCGTACTACCCGGCGTATCACCGTCGGTGCAGACAAAGGATACGACACCGAAGGCTTTGTCAAAGAGCTC
AGGCAAATCAACGTCACGCCGCATGTGGCTCAGAACAACACCAGAAGGAAATCAGGCATTGATGGCAGAACCACCGCTCATCCGAATTACAGCATAAGCC
AAAGGATCAGAAAACGGATCGAGGAAGGCTTTGGCTGGATGAAGACCATCGGCAGACTGAGAAAGACCATGTATCGAGGCATTGAGAAGATTGCCTGGCA
GCTTGATCTCCATGCAGCGGCCTACAACCTGGTACGCATGAAAAACCTGGGGCTCGGTGTCACCTGAGAGCGGCAAATCGGCCTTGGGGTGCATCAAGCA
TAGGCAAATAAAGTTGAAAAAGAGCAACACAACCGAAAACAGCGACATCTGAACAGCGAAGCAAACTTAAAAAATCAGCCGGCTGACTGGAACGGACTCA
AATCGAGCCGATTTTCAACGACCTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1083 bp | 360 aa | 85 | 1167 | + | No |
Chemistry : DDE
ORF sequence :
MRGTDVQNEALFAYVTPESFVPKDHPLRAIRSMADQALSEMSPLFDSMYADSGRSSIAPEKLLKAQLLMILFSIRSNRQLVEQIRYNFLYRWFLGMGLDD
EIWDHSSFTKNHERLIGSDVAAEFLSRILAQAERKRLLSREHFTVDGTLIEAWASIKSFKPKDGPPSAGGGKNKSVDFKGKQLKNDTHSSSTDPNARLYR
KGNTKEAKLCYQGHTLMENRNGLIVKTSVTTATGTGEREAAKAMIRQLPRTTRRITVGADKGYDTEGFVKELRQINVTPHVAQNNTRRKSGIDGRTTAHP
NYSISQRIRKRIEEGFGWMKTIGRLRKTMYRGIEKIAWQLDLHAAAYNLVRMKNLGLGVT
EIWDHSSFTKNHERLIGSDVAAEFLSRILAQAERKRLLSREHFTVDGTLIEAWASIKSFKPKDGPPSAGGGKNKSVDFKGKQLKNDTHSSSTDPNARLYR
KGNTKEAKLCYQGHTLMENRNGLIVKTSVTTATGTGEREAAKAMIRQLPRTTRRITVGADKGYDTEGFVKELRQINVTPHVAQNNTRRKSGIDGRTTAHP
NYSISQRIRKRIEEGFGWMKTIGRLRKTMYRGIEKIAWQLDLHAAAYNLVRMKNLGLGVT
Blast result :
Comments
ISGlo5 is 91% aa similar to ISGsu2.
References
1] ISfinder annotation (2010)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Meincke,L., Brettin,T., Detter,J.C., Han,C., Tapia,R., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Sung,Y., Fletcher,K.E., Ritalahti,K.M., Loeffler,F.E. and Richardson,P. (2008) Direct submisiion GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Meincke,L., Brettin,T., Detter,J.C., Han,C., Tapia,R., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Sung,Y., Fletcher,K.E., Ritalahti,K.M., Loeffler,F.E. and Richardson,P. (2008) Direct submisiion GenBank.