ISSpn7
- Family IS5
- Group ISL2
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABFT01000008 | ND | Streptococcus pneumoniae | Streptococcus pneumoniae Hungary19A-6 Streptococcus pneumoniae CDC1087-00 |
DNA section
IS Length : 856 bp
Ends
IR Length : 15/16
IRL : AGACTTCCTGCGAAACAAAATATGGTATAGTAGTTCTATGAATTATGAAG
IRR : AGACTTCCTGCAAAACTAGAATCCTAGTTCATGATTGATAATACCAGCAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGACAATATT | AATAAAGAAA | 0 | |
| AAGTTATTTT | ATT | ATATATGCAC | 3 |
| CCTTTTTTAG | ATT | GAGGTATTGA | 3 |
| TGAAATGATC | AATAGAGTAT | 0 | |
| TGACAATATT | AATAAAGAAA | 0 |
DNA sequence
AGACTTCCTGCGAAACAAAATATGGTATAGTAGTTCTATGAATTATGAAGCAAGTAAACAACTAACTGATACACGATTTAAGCGTCTTGTTGGTGTTCAG
CGTACCACTTTTGAAGAGATGTTAGCTGTATTAAAAACAGCTTATCAACTTAAACACGCAAAAGGTGGACGAAAACCTAAATTAAGCCTAGAAGACCTTC
TTATGGCCACTCTTCAATATGTGCGAGAATATCGAACTTATGAAGAAATTGCGGCTGATTTTGGTATCCACGAAAGCAACTTAATCCGTCGGAGCCAATG
GGTTGAAGTAACTCTTGTTCAAAGTGGTGTTACGATTTCAAGAACTCCTCTCAGTTCTGAGGACACGGTAATGATTGATGCGACGGAAGTAAAAATCAAT
CGCCCTAAAAAACAATTAGCGAATGATTCTGGTAAAAAGAAATGCCACGCTATGAAGGCTCAAGCGATTGTCACAAGTCAAGGAAGAATTATTCCTTTGG
ATATCACTGTGAACTATAGTCATAATATGAAGTTGTTCAAAATGAGTCGCAAAAATATCGGACAAGCTGGTAAAATCTTGGCTGACAGTGGTTATCAAGG
GCTCATGAAGATATATCCTCAAGCACAAACTCCACGTAAATCCAGCAAACTCAAGCCGCTAACAGCTGAAGATAAAGCCTGTAACCATGCGCTATCCAAG
GAGAGAAGCAAGGTTGAGAACATCTTTGCCAAAGTAAAAACGTTTAAAATGTTTTCAACAACCTATCGAAATCATCGTAAACGCTTCGGATTACGAATGA
ATTTGATTGCTGGTATTATCAATCATGAACTAGGATTCTAGTTTTGCAGGAAGTCT
CGTACCACTTTTGAAGAGATGTTAGCTGTATTAAAAACAGCTTATCAACTTAAACACGCAAAAGGTGGACGAAAACCTAAATTAAGCCTAGAAGACCTTC
TTATGGCCACTCTTCAATATGTGCGAGAATATCGAACTTATGAAGAAATTGCGGCTGATTTTGGTATCCACGAAAGCAACTTAATCCGTCGGAGCCAATG
GGTTGAAGTAACTCTTGTTCAAAGTGGTGTTACGATTTCAAGAACTCCTCTCAGTTCTGAGGACACGGTAATGATTGATGCGACGGAAGTAAAAATCAAT
CGCCCTAAAAAACAATTAGCGAATGATTCTGGTAAAAAGAAATGCCACGCTATGAAGGCTCAAGCGATTGTCACAAGTCAAGGAAGAATTATTCCTTTGG
ATATCACTGTGAACTATAGTCATAATATGAAGTTGTTCAAAATGAGTCGCAAAAATATCGGACAAGCTGGTAAAATCTTGGCTGACAGTGGTTATCAAGG
GCTCATGAAGATATATCCTCAAGCACAAACTCCACGTAAATCCAGCAAACTCAAGCCGCTAACAGCTGAAGATAAAGCCTGTAACCATGCGCTATCCAAG
GAGAGAAGCAAGGTTGAGAACATCTTTGCCAAAGTAAAAACGTTTAAAATGTTTTCAACAACCTATCGAAATCATCGTAAACGCTTCGGATTACGAATGA
ATTTGATTGCTGGTATTATCAATCATGAACTAGGATTCTAGTTTTGCAGGAAGTCT
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 808 bp | 267 aa | 34 | 841 | + | No |
Chemistry : DDE
ORF sequence :
MNYEASKQLTDTRFKRLVGVQRTTFEEMLAVLKTAYQLKHAKGGRKPKLSLEDLLMATLQYVREYRTYEEIAADFGIHESNLIRRSQWVEVTLVQSGVTI
SRTPLSSEDTVMIDATEVKINRPKKQLANDSGKKKCHAMKAQAIVTSQGRIIPLDITVNYSHNMKLFKMSRKNIGQAGKILADSGYQGLMKIYPQAQTPR
KSSKLKPLTAEDKACNHALSKERSKVENIFAKVKTFKMFSTTYRNHRKRFGLRMNLIAGIINHELGF
SRTPLSSEDTVMIDATEVKINRPKKQLANDSGKKKCHAMKAQAIVTSQGRIIPLDITVNYSHNMKLFKMSRKNIGQAGKILADSGYQGLMKIYPQAQTPR
KSSKLKPLTAEDKACNHALSKERSKVENIFAKVKTFKMFSTTYRNHRKRFGLRMNLIAGIINHELGF
Blast result :
Comments
ISSpn7 is 76% aa similar to ISL2.
References
1] ISfinder annotation (2010).
2] Dunning Hotopp,J., Dodson,R., Masignani,V., Coan,P., Kumar,N., Covacci,A., Beall,B., Rappuoli,R., Hollingshead,S. and Tettelin,H. (2007) Direct submission GenBank.
2] Dunning Hotopp,J., Dodson,R., Masignani,V., Coan,P., Kumar,N., Covacci,A., Beall,B., Rappuoli,R., Hollingshead,S. and Tettelin,H. (2007) Direct submission GenBank.