ISLar6
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABCK01000007 | ND | Lentisphaera araneosa | Lentisphaera araneosa HTCC2155 |
DNA section
IS Length : 1591 bp
Ends
IR Length : 17/18
IRL : GATGCACTCCGACAGTTCATTCAAGAGGCTCATAAATAATAGCTTTAAAA
IRR : GATGCACTCCGACATTCTACGCAGCAACTTGAAGTTCGATTTGAGATAAT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTTGGCGCCT | TAGCGA | GAGCAAATTT | 6 |
| TGAGATTTAA | AGGCTA | GGGGTTCTGA | 6 |
| GGTCGTAGGA | TTGCTA | GTAGTGGAGG | 6 |
| CAAGAGCATC | TAGCAG | TTCACCCACG | 6 |
| TCCGTGCCTC | CATCGA | GCAATAATTC | 6 |
| TTAAAACCAT | AGGCTA | GAATATGCTC | 6 |
| TTTGCGGATC | CCGCAA | AAGCCCTTTT | 6 |
DNA sequence
GATGCACTCCGACAGTTCATTCAAGAGGCTCATAAATAATAGCTTTAAAATGTATTTATTTGTAAAAAATTCCGCCTAAAATGCTATATTGTAGTTTTTT
ACAAAAACAAATAGCAGGCGGAATTCATCATGAACGATACTCTTTTTTCCGAATATTTCATCGGGGAACTACAACAAACGGCAGGAATTTTAAGCGGTCC
GCTGAAGATTGCGGGGGAAATCATACTTCTTCCTGAATTTGAAGGGATCCGAAAAGCGATTGAGAGTGATCAATTCCAGTTGAGTATGGATAGGGCCGCT
ACTAAAAATCGCGAATTTAAAAATGGCAATACCAAAAAGCATCCACCAGCGGAATTAGTGGTTGCCTTGTTCATAGCCCGTCACTTTTATAATAATTGTT
ACGGGGAACGCGGCTATAGCATGTTATGTGAGAACAGTTCATTACATCAATTTATCGGGCGCCTAGGCATCGGGAAGTTCCCTTCACGCAATACGATTCA
TGAACAGATTTCTGCACTTTCTGAACATACCCTTACACTTTTTCATCAAGCTATTTTGAACTGTGTCAAAGCATGTGACTTAGATGATTTCTCAGCAGTA
ATCATTGATTCCACAGCCATCAAAGCCGATTCGTCCTGGCCGGTTGATAGTGCATTACTGAAGAACCTTAGTTGTAAAGTTATGAAAAATATTCAGAAAG
TACATGATAAGCTCCCTTGCCTTGAACGTAGAGGAATCCCTCTCAAACGTCTACAGAATTACTGTGATGATATGAGTAAATTGGATTTTGTGATTTCGAT
GTTTAAAGGGAAGAAAGGAGCCAAGAAAATGAGGTATAAGTCTTATACACAAGAACTTTTGCCGAGGTGTCGAAAATTTATAACACGCCTGGAAAAGGTT
CTACCTAAAATCAAACAGCACTGTAGCAGTATAAAGTCCTCGATGCTTGATGAAGATTTTTCTCGCTTTATTGATAAAGTTTTGATGGTTGAGCACCGCT
TTAAGATGGCTCCTGAGGACTACGATGCCAAGACGGCAAGAAAAATTTACAGTATGAGTGATGACGACGCTGCCTTTATCAAAAAAGGCGGTCGTGAAAC
AGTTTTTGGTTATCGTCCAAACTTTGCTTTTAGTGCCAATGGTTTTCTGACTTCTTTCATTTTGGAATCTGGAAATACCAGTGACAGTAAAGTCTTTGCA
GATTGCCTTGTGGAAAATAAAAAAATGACTGGAGAATCCGCTATGATGGTCAGTGTTGATGATGGATATAGCTCTGCAACGAATTTGGATTACGCCATAG
AACAGGGAGTGGAATTAGTCAGTATCAGCGGTTCAAAGGGCAAGAAGCTTCTGGGAGAAGAAATTTATGAAAGTGAAAACTATCAGCTGGCGAGAAACAT
CCGCTCAATCTCTGAAGCGGGGATTTCAAAGATGAAGAACTATCACAATCTTGAGAGGTTTACCGTTTGTGGCTTAAAGAGAGTTCGACAGGAAACGCTC
ATAAGCACTATAGGGTTCAACTTGGAGAGACTCTACCAGTTATTATCTCAAATCGAACTTCAAGTTGCTGCGTAGAATGTCGGAGTGCATC
ACAAAAACAAATAGCAGGCGGAATTCATCATGAACGATACTCTTTTTTCCGAATATTTCATCGGGGAACTACAACAAACGGCAGGAATTTTAAGCGGTCC
GCTGAAGATTGCGGGGGAAATCATACTTCTTCCTGAATTTGAAGGGATCCGAAAAGCGATTGAGAGTGATCAATTCCAGTTGAGTATGGATAGGGCCGCT
ACTAAAAATCGCGAATTTAAAAATGGCAATACCAAAAAGCATCCACCAGCGGAATTAGTGGTTGCCTTGTTCATAGCCCGTCACTTTTATAATAATTGTT
ACGGGGAACGCGGCTATAGCATGTTATGTGAGAACAGTTCATTACATCAATTTATCGGGCGCCTAGGCATCGGGAAGTTCCCTTCACGCAATACGATTCA
TGAACAGATTTCTGCACTTTCTGAACATACCCTTACACTTTTTCATCAAGCTATTTTGAACTGTGTCAAAGCATGTGACTTAGATGATTTCTCAGCAGTA
ATCATTGATTCCACAGCCATCAAAGCCGATTCGTCCTGGCCGGTTGATAGTGCATTACTGAAGAACCTTAGTTGTAAAGTTATGAAAAATATTCAGAAAG
TACATGATAAGCTCCCTTGCCTTGAACGTAGAGGAATCCCTCTCAAACGTCTACAGAATTACTGTGATGATATGAGTAAATTGGATTTTGTGATTTCGAT
GTTTAAAGGGAAGAAAGGAGCCAAGAAAATGAGGTATAAGTCTTATACACAAGAACTTTTGCCGAGGTGTCGAAAATTTATAACACGCCTGGAAAAGGTT
CTACCTAAAATCAAACAGCACTGTAGCAGTATAAAGTCCTCGATGCTTGATGAAGATTTTTCTCGCTTTATTGATAAAGTTTTGATGGTTGAGCACCGCT
TTAAGATGGCTCCTGAGGACTACGATGCCAAGACGGCAAGAAAAATTTACAGTATGAGTGATGACGACGCTGCCTTTATCAAAAAAGGCGGTCGTGAAAC
AGTTTTTGGTTATCGTCCAAACTTTGCTTTTAGTGCCAATGGTTTTCTGACTTCTTTCATTTTGGAATCTGGAAATACCAGTGACAGTAAAGTCTTTGCA
GATTGCCTTGTGGAAAATAAAAAAATGACTGGAGAATCCGCTATGATGGTCAGTGTTGATGATGGATATAGCTCTGCAACGAATTTGGATTACGCCATAG
AACAGGGAGTGGAATTAGTCAGTATCAGCGGTTCAAAGGGCAAGAAGCTTCTGGGAGAAGAAATTTATGAAAGTGAAAACTATCAGCTGGCGAGAAACAT
CCGCTCAATCTCTGAAGCGGGGATTTCAAAGATGAAGAACTATCACAATCTTGAGAGGTTTACCGTTTGTGGCTTAAAGAGAGTTCGACAGGAAACGCTC
ATAAGCACTATAGGGTTCAACTTGGAGAGACTCTACCAGTTATTATCTCAAATCGAACTTCAAGTTGCTGCGTAGAATGTCGGAGTGCATC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1446 bp | 481 aa | 130 | 1575 | + | No |
Chemistry : DDE
ORF sequence :
MNDTLFSEYFIGELQQTAGILSGPLKIAGEIILLPEFEGIRKAIESDQFQLSMDRAATKNREFKNGNTKKHPPAELVVALFIARHFYNNCYGERGYSMLC
ENSSLHQFIGRLGIGKFPSRNTIHEQISALSEHTLTLFHQAILNCVKACDLDDFSAVIIDSTAIKADSSWPVDSALLKNLSCKVMKNIQKVHDKLPCLER
RGIPLKRLQNYCDDMSKLDFVISMFKGKKGAKKMRYKSYTQELLPRCRKFITRLEKVLPKIKQHCSSIKSSMLDEDFSRFIDKVLMVEHRFKMAPEDYDA
KTARKIYSMSDDDAAFIKKGGRETVFGYRPNFAFSANGFLTSFILESGNTSDSKVFADCLVENKKMTGESAMMVSVDDGYSSATNLDYAIEQGVELVSIS
GSKGKKLLGEEIYESENYQLARNIRSISEAGISKMKNYHNLERFTVCGLKRVRQETLISTIGFNLERLYQLLSQIELQVAA
ENSSLHQFIGRLGIGKFPSRNTIHEQISALSEHTLTLFHQAILNCVKACDLDDFSAVIIDSTAIKADSSWPVDSALLKNLSCKVMKNIQKVHDKLPCLER
RGIPLKRLQNYCDDMSKLDFVISMFKGKKGAKKMRYKSYTQELLPRCRKFITRLEKVLPKIKQHCSSIKSSMLDEDFSRFIDKVLMVEHRFKMAPEDYDA
KTARKIYSMSDDDAAFIKKGGRETVFGYRPNFAFSANGFLTSFILESGNTSDSKVFADCLVENKKMTGESAMMVSVDDGYSSATNLDYAIEQGVELVSIS
GSKGKKLLGEEIYESENYQLARNIRSISEAGISKMKNYHNLERFTVCGLKRVRQETLISTIGFNLERLYQLLSQIELQVAA
Blast result :
Comments
ISLar6 is 44% aa similar to ISRle10.
References
1] ISfinder annotation (2010).
2] Giovannoni,S., Cho,J.-C., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.
2] Giovannoni,S., Cho,J.-C., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.