ISGvi6
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_005125 | ND | Gloeobacter violaceus | Gloeobacter violaceus PCC 7421 |
DNA section
IS Length : 1662 bp
Ends
IR Length : 17
IRL : AGCATCGGTCCAGAACCAGCAGTTGACGGTAGAAGCCGCATCCTCTTTTC
IRR : AGCATCGGTCCAGAACCTAAGCCGCCTGTGAACGCCCAGCGGCTTCCTGT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ATAAGGAAGA | CTAG | CTGCAGGTGG | 4 |
| AACACCCGCT | CTAG | GTGTCTTTCG | 4 |
| TACCGCGAGC | CTAG | CCCCCGTCAG | 4 |
| GCGCTCGCGC | CTAG | GGCAGCTTAG | 4 |
| AACCCGATGA | CTAG | GCGGTTCTAT | 4 |
DNA sequence
AGCATCGGTCCAGAACCAGCAGTTGACGGTAGAAGCCGCATCCTCTTTTCTGGAGACGACCTCTACCTCCTTCGCCTATGCAGCCTTCTGTCTGGCAGCC
GCCAGTGGAACCCTCACCCGCTGAGCAGGCTATCCTCAAGCGTATCCGTCGCGCCAAGCTGTTCGTTTTCCTGCGCCGCATCCGCCATCAACTCTTCGAC
GCCGCCTTCCAGAGCGAACTGGCCGGCATCTACAAAGACAGCCCTTGCGGTCAGCCGCCCATCCCACCGGCTCAACTGGCCCTGGCCACTGTCTTGCAGG
CCTACACCGGTATCTCCGACGACGAGACCATTGAAGTGCTCACCATGGACCGCCGGTGGCAGATGGTGCTCGACTGCCTCGATTGCGAGGAAGCCCCCTT
CGGCAAAGCCACCCTGATACGCTTCCGCCAAGCGCTCATCGCCCACGGCCTCGACCGTCGCCTGATTGAGCGGACCATCGAGTTGGCCACCAGCGACGGC
GGGTTCGGCTCACGGGCGTTGCGGGCGGCCCTCGATTCGAGCCCTTTGTGGGGAGCCGGGAGAGTCGAGGATTCTTTTAATTTGTTGGGCCATGCAATGC
GCAAGGCATTGAGGATCATGGTGTGCCAGACGGGGGTGGGACTGGCGCAATGGGCTGAGCAGACAGGCACCACACTCGTCGCGGGCAGCAGTTTGAAGGC
TGCCCTGGACATCGATTGGAGTCAACCGGACGAATGTGCCGAAGCTCTGGGAAGGCTGCTCGGGGCGCTCGAATCGCTGGAAAGTTACTTGGACGGGCAA
ACTCAACCCCCTCAGGCTGGGGTCGCACGGTGTCTGCAAGCGGCCGAGCAAGTCCACCAGCAGGACGTACAACTCAACTCGCGCGGACAGTTTGTCCTTC
GGCGTGGAGTCAGCCGCGAGCGGCGCATCAGCATCGAAGACCCCGCGATGCGCCACGGCCGCAAAAGCCGGGCGGTGCGCATCGATGGCTACAAGCGCCA
CGTGCTCAAAGACATCGACAGCGGCCTGGTGCGCGCAGTGGGCATTACTGCGGCCAACCGACCGGAAGCGGCGGTGACAAGGGACATCGAGGCGGACCTG
GAGCCTCAGCGGGTGAAGTTGATTGAACTGCACATCGACCGGGCGTATCTGAGCAGCGAGTGGGTCAGACTTCGTCCAGAAGACTTGCGTATTTACTGCA
AAGCCTGGCCGGTTAGAAATGGGCCGTACTTCCAGAAGACGGCCTTCGTGCTCGACTGGGAGGCGATGCGGATTCGTTGTCCACAGGGCGTCACCCAGCC
TTTTGAGGTGGGTGGGAAAGTGCGGTTTCCGGCCGCGCGCTGTCGGCGCTGTCCCCTACAGGAACGCTGCACGACCAGCCCCAAAGGTCGCAGTGTCTCG
ATCCATCCGGACGAACTTCTGCTGGTCGAGTTGCGCGAACGCCAGCAGACAAAGGAGGGTCGAGCGAAGTTGCGTGAGCGCGTGAGTGTCGAGCACAGTT
TGGCGCACATCGGTCAGTGGCAGGGACGCCGAGCCCGTTACCTGGGCGTGCGCAAGAATCTATTCGATTTGCGTCGGGTGGCGGTGGTGCACAATCTGCA
TGTGCTAGCCCGACAGGAAGCCGCTGGGCGTTCACAGGCGGCTTAGGTTCTGGACCGATGCT
GCCAGTGGAACCCTCACCCGCTGAGCAGGCTATCCTCAAGCGTATCCGTCGCGCCAAGCTGTTCGTTTTCCTGCGCCGCATCCGCCATCAACTCTTCGAC
GCCGCCTTCCAGAGCGAACTGGCCGGCATCTACAAAGACAGCCCTTGCGGTCAGCCGCCCATCCCACCGGCTCAACTGGCCCTGGCCACTGTCTTGCAGG
CCTACACCGGTATCTCCGACGACGAGACCATTGAAGTGCTCACCATGGACCGCCGGTGGCAGATGGTGCTCGACTGCCTCGATTGCGAGGAAGCCCCCTT
CGGCAAAGCCACCCTGATACGCTTCCGCCAAGCGCTCATCGCCCACGGCCTCGACCGTCGCCTGATTGAGCGGACCATCGAGTTGGCCACCAGCGACGGC
GGGTTCGGCTCACGGGCGTTGCGGGCGGCCCTCGATTCGAGCCCTTTGTGGGGAGCCGGGAGAGTCGAGGATTCTTTTAATTTGTTGGGCCATGCAATGC
GCAAGGCATTGAGGATCATGGTGTGCCAGACGGGGGTGGGACTGGCGCAATGGGCTGAGCAGACAGGCACCACACTCGTCGCGGGCAGCAGTTTGAAGGC
TGCCCTGGACATCGATTGGAGTCAACCGGACGAATGTGCCGAAGCTCTGGGAAGGCTGCTCGGGGCGCTCGAATCGCTGGAAAGTTACTTGGACGGGCAA
ACTCAACCCCCTCAGGCTGGGGTCGCACGGTGTCTGCAAGCGGCCGAGCAAGTCCACCAGCAGGACGTACAACTCAACTCGCGCGGACAGTTTGTCCTTC
GGCGTGGAGTCAGCCGCGAGCGGCGCATCAGCATCGAAGACCCCGCGATGCGCCACGGCCGCAAAAGCCGGGCGGTGCGCATCGATGGCTACAAGCGCCA
CGTGCTCAAAGACATCGACAGCGGCCTGGTGCGCGCAGTGGGCATTACTGCGGCCAACCGACCGGAAGCGGCGGTGACAAGGGACATCGAGGCGGACCTG
GAGCCTCAGCGGGTGAAGTTGATTGAACTGCACATCGACCGGGCGTATCTGAGCAGCGAGTGGGTCAGACTTCGTCCAGAAGACTTGCGTATTTACTGCA
AAGCCTGGCCGGTTAGAAATGGGCCGTACTTCCAGAAGACGGCCTTCGTGCTCGACTGGGAGGCGATGCGGATTCGTTGTCCACAGGGCGTCACCCAGCC
TTTTGAGGTGGGTGGGAAAGTGCGGTTTCCGGCCGCGCGCTGTCGGCGCTGTCCCCTACAGGAACGCTGCACGACCAGCCCCAAAGGTCGCAGTGTCTCG
ATCCATCCGGACGAACTTCTGCTGGTCGAGTTGCGCGAACGCCAGCAGACAAAGGAGGGTCGAGCGAAGTTGCGTGAGCGCGTGAGTGTCGAGCACAGTT
TGGCGCACATCGGTCAGTGGCAGGGACGCCGAGCCCGTTACCTGGGCGTGCGCAAGAATCTATTCGATTTGCGTCGGGTGGCGGTGGTGCACAATCTGCA
TGTGCTAGCCCGACAGGAAGCCGCTGGGCGTTCACAGGCGGCTTAGGTTCTGGACCGATGCT
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1569 bp | 522 aa | 78 | 1646 | + | No |
Chemistry : DDE
ORF sequence :
MQPSVWQPPVEPSPAEQAILKRIRRAKLFVFLRRIRHQLFDAAFQSELAGIYKDSPCGQPPIPPAQLALATVLQAYTGISDDETIEVLTMDRRWQMVLDC
LDCEEAPFGKATLIRFRQALIAHGLDRRLIERTIELATSDGGFGSRALRAALDSSPLWGAGRVEDSFNLLGHAMRKALRIMVCQTGVGLAQWAEQTGTTL
VAGSSLKAALDIDWSQPDECAEALGRLLGALESLESYLDGQTQPPQAGVARCLQAAEQVHQQDVQLNSRGQFVLRRGVSRERRISIEDPAMRHGRKSRAV
RIDGYKRHVLKDIDSGLVRAVGITAANRPEAAVTRDIEADLEPQRVKLIELHIDRAYLSSEWVRLRPEDLRIYCKAWPVRNGPYFQKTAFVLDWEAMRIR
CPQGVTQPFEVGGKVRFPAARCRRCPLQERCTTSPKGRSVSIHPDELLLVELRERQQTKEGRAKLRERVSVEHSLAHIGQWQGRRARYLGVRKNLFDLRR
VAVVHNLHVLARQEAAGRSQAA
LDCEEAPFGKATLIRFRQALIAHGLDRRLIERTIELATSDGGFGSRALRAALDSSPLWGAGRVEDSFNLLGHAMRKALRIMVCQTGVGLAQWAEQTGTTL
VAGSSLKAALDIDWSQPDECAEALGRLLGALESLESYLDGQTQPPQAGVARCLQAAEQVHQQDVQLNSRGQFVLRRGVSRERRISIEDPAMRHGRKSRAV
RIDGYKRHVLKDIDSGLVRAVGITAANRPEAAVTRDIEADLEPQRVKLIELHIDRAYLSSEWVRLRPEDLRIYCKAWPVRNGPYFQKTAFVLDWEAMRIR
CPQGVTQPFEVGGKVRFPAARCRRCPLQERCTTSPKGRSVSIHPDELLLVELRERQQTKEGRAKLRERVSVEHSLAHIGQWQGRRARYLGVRKNLFDLRR
VAVVHNLHVLARQEAAGRSQAA
Blast result :
Comments
ISGvi6 is 46% aa similar to ISRxy1.
References
1] ISfinder annotation (2010)
2] Nakamura,Y., Kaneko,T., Sato,S., Mimuro,M., Miyashita,H., Tsuchiya,T., Sasamoto,S., Watanabe,A., Kawashima,K., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Nakazaki,N., Shimpo,S., Takeuchi,C., Yamada,M. and Tabata,S. (2003) DNA Res. 10 (4), 181-201 .
3] Nakamura,Y., Kaneko,T., Sato,S., Mimuro,M., Miyashita,H., Tsuchiya,T., Sasamoto,S., Watanabe,A., Kawashima,K., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Nakazaki,N., Shimpo,S., Takeuchi,C., Yamada,M. and Tabata,S. (2003) DNA Res. 10 (4), 137-145 .
2] Nakamura,Y., Kaneko,T., Sato,S., Mimuro,M., Miyashita,H., Tsuchiya,T., Sasamoto,S., Watanabe,A., Kawashima,K., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Nakazaki,N., Shimpo,S., Takeuchi,C., Yamada,M. and Tabata,S. (2003) DNA Res. 10 (4), 181-201 .
3] Nakamura,Y., Kaneko,T., Sato,S., Mimuro,M., Miyashita,H., Tsuchiya,T., Sasamoto,S., Watanabe,A., Kawashima,K., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Nakazaki,N., Shimpo,S., Takeuchi,C., Yamada,M. and Tabata,S. (2003) DNA Res. 10 (4), 137-145 .