ISFac11

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AABC05000015 ND Ferroplasma acidarmanus
Ferroplasma acidarmanus Fer1
DNA section
IS Length : 1514 bp

Ends


Left end : AAATCATTCTACCAGAAAGAAAGACACTGAGTTTAAGATGTGGATGAATTTCTGGAAATAAAGAAATAAATGGAAATAATTTATATATTAAATTGATATA II struct. : No
Right end : ATTGCCTCTGGCTTTGAAGGGCTTAATATAAGCCCCTATGTGAAGTTAAGCATGGTCAATGAAGCAGGAAGCCTCTATGCTTTAGCATGAGGTAGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
ATCATGGGTAATAGAAATTACTTTTACCATACATATtcac

DNA sequence

AAATCATTCTACCAGAAAGAAAGACACTGAGTTTAAGATGTGGATGAATTTCTGGAAATAAAGAAATAAATGGAAATAATTTATATATTAAATTGATATA
ATAAAATTAATAGAAGGAAGTATGATAGAAGAAAAGAGGAACAAAATTAAAAATTCGTTAAGAATAACAAAAGAAAGAAGAAAAACGCAGGATGTAATAA
TACTTAAACTAAAAATAGACAATGATAAATTAAATAATAATACTATAAAGGCATTAAACACAATCTTTTTAGAAGCTAAATGGCTATATAATTATGTTAT
AAACAAAGAATTCAACAATGATATTTTTAATATAGATCCTAAAATAAAGAATGTACAGGTGTATGTAATAGACCATTATGAAACAAGGAAATTAAAATAT
TTATCATCACAGATGAAGGAGGAAATTATTAACAGGGCAATGGACAATATAAGAGGCCTCCATAAATTAAAAGAAAAGGGACTTAAGATAGGAAAATTGA
AATTTAAATCATTTATAACATCAATACCATTGAATCAATATACTATAACATATAAAATAATAAACAATAATTATATTAAAATACAGAATATAAAGCAGTT
GTTAAAAGTAAATGGCCTGGATAACTTAGAATGCTATTATGAACCGGCAAGTGCATTGTTAATCAATAAAAACAGTAATTATTATATCAACATAACAGCA
TACAAAAATAAATACATTTTAGAAAAACCTGTCAATAATCAAAAAATAATATCATTTGACTTAGGAATAAAGAACCAGTTGACATGCTCTAATGGATCAA
TATTAAACTATAATATACCAAAATCCAGAAAAGAAATAAGATTGCAAAGGTCATTGTCAAGGAAAGCTAAATATGCAGAAGGAACTAAAAAACTAAGCAG
AGGGCAATCCAGGAATTATTATAAAAATAAAAACAAATTAAACAAAGAACAGAATAAGACAATGAACAAAAGAAAAGATACTATTAACAAAATAACCCAT
TATCTAACATCCAATTATGATATAGTAGTAACACAGAATGACAATATAAGAGGATGGAAGTATCTCTTTGGCAAAAGGATAGAGTCTACAGGCATAGGTG
GAATAATAGATGCACTTAAACATAAGGCATCAACACTTATACTTATAGATCGTTTTATTCCTACCACAAAGGAATGCTCTAAATGCCATAATAAATATGA
TATAAAATTAGATGAAAGAATATATCAATGCCATAACTGTGGTTTTATAATTGATAGGGATTATAATTCTTCATTGAATATGATTTATTATGGAACAATA
AAATTAAATGAATTATTAAAAATTAAAAATAAAAAATTAAATAATTATTTTAAGAAATATAATATAAATTTAAATGTACCTATGGAGCGTAGGGAACTAA
CGCCTGTGGAGATTATTGCCTCTGGCTTTGAAGGGCTTAATATAAGCCCCTATGTGAAGTTAAGCATGGTCAATGAAGCAGGAAGCCTCTATGCTTTAGC
ATGAGGTAGTTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1383 bp460 aa1221504+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MIEEKRNKIKNSLRITKERRKTQDVIILKLKIDNDKLNNNTIKALNTIFLEAKWLYNYVINKEFNNDIFNIDPKIKNVQVYVIDHYETRKLKYLSSQMKE
EIINRAMDNIRGLHKLKEKGLKIGKLKFKSFITSIPLNQYTITYKIINNNYIKIQNIKQLLKVNGLDNLECYYEPASALLINKNSNYYINITAYKNKYIL
EKPVNNQKIISFDLGIKNQLTCSNGSILNYNIPKSRKEIRLQRSLSRKAKYAEGTKKLSRGQSRNYYKNKNKLNKEQNKTMNKRKDTINKITHYLTSNYD
IVVTQNDNIRGWKYLFGKRIESTGIGGIIDALKHKASTLILIDRFIPTTKECSKCHNKYDIKLDERIYQCHNCGFIIDRDYNSSLNMIYYGTIKLNELLK
IKNKKLNNYFKKYNINLNVPMERRELTPVEIIASGFEGLNISPYVKLSMVNEAGSLYALA

 

Blast result :
Comments
ISFac 11 is 48% aa similar to ISBlo12.
References
1] ISfinder annotation (2010)
2] Allen,E.E., Tyson,G.W., Whitaker,R.J., Detter,J.C., Richardson,P.M. and Banfield,J.F. (2007) Proc. Natl. Acad. Sci. U.S.A. 104 (6), 1883-1888.