ISTosp1

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
DQ257628 ND Tolypothrix sp.
Fremyella diplosiphon CCAP 1429/1
Tolypothrix sp. PCC 7601
DNA section
IS Length : 1372 bp

Ends


Left end : CAGGACGTTCATTGAAAACCTTGTGGCTTTAGCCCTGTTTACGCCTCATTCACTCTTTCTATGCCTTGGTATACTTATGCTTTTTATGTTAGCATAAGTA II struct. : No
Right end : CAGGAGATTTGCCCTCTTGGGCAGTTGGCGCAAGCCTGCTGTCTAACGGCGAGTCGTTGAATGTAGAATCCCCTCGCCTTTAGGCAGAGGGGAGTGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CCTCAGTGCTGGTTATAGTGATCATGCTtcaa

DNA sequence

CAGGACGTTCATTGAAAACCTTGTGGCTTTAGCCCTGTTTACGCCTCATTCACTCTTTCTATGCCTTGGTATACTTATGCTTTTTATGTTAGCATAAGTA
TGTGGTAAATTGGTCGATGCCCATGATTGTTTACGAGTTCAAAGTCAAGGCAAAAGACCAACAATATCAGGCGATAGACGAAGCAATTCGTACTAGCCAG
TTCATTCAAAATATGTGCTTACGCTACTGGATGGACAACAAAGATTCAAAAGTAGATAAGTACGCATTGAATAAATACTGCGCTGTATTAGCTGCCGAAT
TCCCCTTTGCTGATGAACTCAATTCAATGGCTAGGCAGTCTGCGGCTGAACGTTCTTGGAGTGCGATAGCTAGGTTTTACGATAACTGCAAGAAAAAGGT
TAAAGGTAAAAAGGGGTTTCCAAAGTTCAAGAAAAACTGCCGTTCAGTGGAATATAAATCAACTGGATGGAAGCTTTCTCAAACTCGAAAGGCTATCACC
TTTTCAGACAACAAAGGTATTGGAACTCTGAAATTAAAGGGAACCTATGACCTTAATTACTATGACATCAAGCAAATTAAACGGGTGCGCTTAGTACGCC
GTGCTGATGGATATTATGCCCAATTTGCGATTGATGTTAACGTCAAAATCGCAACTCAACCCACAAATCAAATAGTGGGTATTGATTTGGGTTTGAAGTA
CTTCATTGCTGATAATCAAGGCAATGTAGAACCTTCCCCCCAGTGTTACCGGAAATCAGAAAAACAACTCAATCGTGCCAACCGCAAGAAGTCGAAGAAG
TTCAGTAGAGATAAAAAGAAATCTCTTCAAAGACAATCAAACAATTACCACAAAGCTAGAAAGCGATATGCCCGGAAGCATTTAAGGGTAAGTAGGCAAC
GAAAAGAGTATTGCAAGAAGTTGGCATACTCCGTTATCCAATCTCACGATTTGGTAGCCTACGAAGATTTAAATGTGAAAGGGTTGGTTAAAAATCGACA
TCTAGCTAAATCTATTTCTGATGCTGGCTGGTACACTTTCCGTAGTTGGTTAGAGTATTTTGGACACAAATATGGAAAGGTGACTATTGCAGTCCCTCCC
CACAATACAAGCCAAAACTGCTCTAACTGTGGCAAGAAAGTGAAAAAATCTCTGTCTACTAGGACTCATGTTTGTCCTCATTGCGGATACGCAGAAGATA
GGGATGTCAACGCAGCAATCAACATTTTGAGACTAGGACTCAGTACGGTAGGGCATACCGGAACTTACGCTACAGGAGATTTGCCCTCTTGGGCAGTTGG
CGCAAGCCTGCTGTCTAACGGCGAGTCGTTGAATGTAGAATCCCCTCGCCTTTAGGCAGAGGGGAGTGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1239 bp412 aa1171355+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MPMIVYEFKVKAKDQQYQAIDEAIRTSQFIQNMCLRYWMDNKDSKVDKYALNKYCAVLAAEFPFADELNSMARQSAAERSWSAIARFYDNCKKKVKGKKG
FPKFKKNCRSVEYKSTGWKLSQTRKAITFSDNKGIGTLKLKGTYDLNYYDIKQIKRVRLVRRADGYYAQFAIDVNVKIATQPTNQIVGIDLGLKYFIADN
QGNVEPSPQCYRKSEKQLNRANRKKSKKFSRDKKKSLQRQSNNYHKARKRYARKHLRVSRQRKEYCKKLAYSVIQSHDLVAYEDLNVKGLVKNRHLAKSI
SDAGWYTFRSWLEYFGHKYGKVTIAVPPHNTSQNCSNCGKKVKKSLSTRTHVCPHCGYAEDRDVNAAINILRLGLSTVGHTGTYATGDLPSWAVGASLLS
NGESLNVESPRL

 

Blast result :
Comments
ISTosp1 is 63% aa similar to IS891.
References
1] Luque,I., Andujar,A., Jia,L., Zabulon,G., de Marsac,N.T., Flores,E. and Houmard,J. (2006) Mol. Microbiol. 60 (5), 1276-1288.