ISTosp1
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
DQ257628 | ND | Tolypothrix sp. | Fremyella diplosiphon CCAP 1429/1 Tolypothrix sp. PCC 7601 |
DNA section
IS Length : 1372 bp
Ends
Left end : CAGGACGTTCATTGAAAACCTTGTGGCTTTAGCCCTGTTTACGCCTCATTCACTCTTTCTATGCCTTGGTATACTTATGCTTTTTATGTTAGCATAAGTA II struct. : No
Right end : CAGGAGATTTGCCCTCTTGGGCAGTTGGCGCAAGCCTGCTGTCTAACGGCGAGTCGTTGAATGTAGAATCCCCTCGCCTTTAGGCAGAGGGGAGTGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CCTCAGTGCTGG | TTAT | AGTGATCATGCT | tcaa |
DNA sequence
CAGGACGTTCATTGAAAACCTTGTGGCTTTAGCCCTGTTTACGCCTCATTCACTCTTTCTATGCCTTGGTATACTTATGCTTTTTATGTTAGCATAAGTA
TGTGGTAAATTGGTCGATGCCCATGATTGTTTACGAGTTCAAAGTCAAGGCAAAAGACCAACAATATCAGGCGATAGACGAAGCAATTCGTACTAGCCAG
TTCATTCAAAATATGTGCTTACGCTACTGGATGGACAACAAAGATTCAAAAGTAGATAAGTACGCATTGAATAAATACTGCGCTGTATTAGCTGCCGAAT
TCCCCTTTGCTGATGAACTCAATTCAATGGCTAGGCAGTCTGCGGCTGAACGTTCTTGGAGTGCGATAGCTAGGTTTTACGATAACTGCAAGAAAAAGGT
TAAAGGTAAAAAGGGGTTTCCAAAGTTCAAGAAAAACTGCCGTTCAGTGGAATATAAATCAACTGGATGGAAGCTTTCTCAAACTCGAAAGGCTATCACC
TTTTCAGACAACAAAGGTATTGGAACTCTGAAATTAAAGGGAACCTATGACCTTAATTACTATGACATCAAGCAAATTAAACGGGTGCGCTTAGTACGCC
GTGCTGATGGATATTATGCCCAATTTGCGATTGATGTTAACGTCAAAATCGCAACTCAACCCACAAATCAAATAGTGGGTATTGATTTGGGTTTGAAGTA
CTTCATTGCTGATAATCAAGGCAATGTAGAACCTTCCCCCCAGTGTTACCGGAAATCAGAAAAACAACTCAATCGTGCCAACCGCAAGAAGTCGAAGAAG
TTCAGTAGAGATAAAAAGAAATCTCTTCAAAGACAATCAAACAATTACCACAAAGCTAGAAAGCGATATGCCCGGAAGCATTTAAGGGTAAGTAGGCAAC
GAAAAGAGTATTGCAAGAAGTTGGCATACTCCGTTATCCAATCTCACGATTTGGTAGCCTACGAAGATTTAAATGTGAAAGGGTTGGTTAAAAATCGACA
TCTAGCTAAATCTATTTCTGATGCTGGCTGGTACACTTTCCGTAGTTGGTTAGAGTATTTTGGACACAAATATGGAAAGGTGACTATTGCAGTCCCTCCC
CACAATACAAGCCAAAACTGCTCTAACTGTGGCAAGAAAGTGAAAAAATCTCTGTCTACTAGGACTCATGTTTGTCCTCATTGCGGATACGCAGAAGATA
GGGATGTCAACGCAGCAATCAACATTTTGAGACTAGGACTCAGTACGGTAGGGCATACCGGAACTTACGCTACAGGAGATTTGCCCTCTTGGGCAGTTGG
CGCAAGCCTGCTGTCTAACGGCGAGTCGTTGAATGTAGAATCCCCTCGCCTTTAGGCAGAGGGGAGTGTCAA
TGTGGTAAATTGGTCGATGCCCATGATTGTTTACGAGTTCAAAGTCAAGGCAAAAGACCAACAATATCAGGCGATAGACGAAGCAATTCGTACTAGCCAG
TTCATTCAAAATATGTGCTTACGCTACTGGATGGACAACAAAGATTCAAAAGTAGATAAGTACGCATTGAATAAATACTGCGCTGTATTAGCTGCCGAAT
TCCCCTTTGCTGATGAACTCAATTCAATGGCTAGGCAGTCTGCGGCTGAACGTTCTTGGAGTGCGATAGCTAGGTTTTACGATAACTGCAAGAAAAAGGT
TAAAGGTAAAAAGGGGTTTCCAAAGTTCAAGAAAAACTGCCGTTCAGTGGAATATAAATCAACTGGATGGAAGCTTTCTCAAACTCGAAAGGCTATCACC
TTTTCAGACAACAAAGGTATTGGAACTCTGAAATTAAAGGGAACCTATGACCTTAATTACTATGACATCAAGCAAATTAAACGGGTGCGCTTAGTACGCC
GTGCTGATGGATATTATGCCCAATTTGCGATTGATGTTAACGTCAAAATCGCAACTCAACCCACAAATCAAATAGTGGGTATTGATTTGGGTTTGAAGTA
CTTCATTGCTGATAATCAAGGCAATGTAGAACCTTCCCCCCAGTGTTACCGGAAATCAGAAAAACAACTCAATCGTGCCAACCGCAAGAAGTCGAAGAAG
TTCAGTAGAGATAAAAAGAAATCTCTTCAAAGACAATCAAACAATTACCACAAAGCTAGAAAGCGATATGCCCGGAAGCATTTAAGGGTAAGTAGGCAAC
GAAAAGAGTATTGCAAGAAGTTGGCATACTCCGTTATCCAATCTCACGATTTGGTAGCCTACGAAGATTTAAATGTGAAAGGGTTGGTTAAAAATCGACA
TCTAGCTAAATCTATTTCTGATGCTGGCTGGTACACTTTCCGTAGTTGGTTAGAGTATTTTGGACACAAATATGGAAAGGTGACTATTGCAGTCCCTCCC
CACAATACAAGCCAAAACTGCTCTAACTGTGGCAAGAAAGTGAAAAAATCTCTGTCTACTAGGACTCATGTTTGTCCTCATTGCGGATACGCAGAAGATA
GGGATGTCAACGCAGCAATCAACATTTTGAGACTAGGACTCAGTACGGTAGGGCATACCGGAACTTACGCTACAGGAGATTTGCCCTCTTGGGCAGTTGG
CGCAAGCCTGCTGTCTAACGGCGAGTCGTTGAATGTAGAATCCCCTCGCCTTTAGGCAGAGGGGAGTGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1239 bp | 412 aa | 117 | 1355 | + | No |
AG : TnpB
ORF sequence :
MPMIVYEFKVKAKDQQYQAIDEAIRTSQFIQNMCLRYWMDNKDSKVDKYALNKYCAVLAAEFPFADELNSMARQSAAERSWSAIARFYDNCKKKVKGKKG
FPKFKKNCRSVEYKSTGWKLSQTRKAITFSDNKGIGTLKLKGTYDLNYYDIKQIKRVRLVRRADGYYAQFAIDVNVKIATQPTNQIVGIDLGLKYFIADN
QGNVEPSPQCYRKSEKQLNRANRKKSKKFSRDKKKSLQRQSNNYHKARKRYARKHLRVSRQRKEYCKKLAYSVIQSHDLVAYEDLNVKGLVKNRHLAKSI
SDAGWYTFRSWLEYFGHKYGKVTIAVPPHNTSQNCSNCGKKVKKSLSTRTHVCPHCGYAEDRDVNAAINILRLGLSTVGHTGTYATGDLPSWAVGASLLS
NGESLNVESPRL
FPKFKKNCRSVEYKSTGWKLSQTRKAITFSDNKGIGTLKLKGTYDLNYYDIKQIKRVRLVRRADGYYAQFAIDVNVKIATQPTNQIVGIDLGLKYFIADN
QGNVEPSPQCYRKSEKQLNRANRKKSKKFSRDKKKSLQRQSNNYHKARKRYARKHLRVSRQRKEYCKKLAYSVIQSHDLVAYEDLNVKGLVKNRHLAKSI
SDAGWYTFRSWLEYFGHKYGKVTIAVPPHNTSQNCSNCGKKVKKSLSTRTHVCPHCGYAEDRDVNAAINILRLGLSTVGHTGTYATGDLPSWAVGASLLS
NGESLNVESPRL
Blast result :
Comments
ISTosp1 is 63% aa similar to IS891.
References
1] Luque,I., Andujar,A., Jia,L., Zabulon,G., de Marsac,N.T., Flores,E. and Houmard,J. (2006) Mol. Microbiol. 60 (5), 1276-1288.