ISDol1

  • Family ISNCY
  • Group ISDol1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009943 ND Desulfococcus oleovorans
Desulfococcus oleovorans Hxd3
DNA section
IS Length : 1671 bp

Ends


IR Length : 14/16

IRL : GTGTCCATCCACAGATATAACTACTTGTAAAGAATAAAAAAAGCGCATTT
IRR : GTGTCCATCCATAAATTGTCGATTTTGGGTCTTTAATCTGGCACATTTAT

Insertion site


Left flankDirect repeatRight flankDR Length
TATGAGTTCTTACCTATAAAAGCCAA6
AACTTTTTGCTATTTAGGGAATTCCG6
CCCTCCAACCTAGCTAAGAAACAAGT6
GGATGGACACTAACTAGGTTTTCAAT6
ATTTAAGTTTTAACTAGTGTCCATCC6
AAAATTTAGTGGTACTAAATAAAAAG7

DNA sequence

GTGTCCATCCACAGATATAACTACTTGTAAAGAATAAAAAAAGCGCATTTTGTACTGGTATTTTTTGTCTTGCTGTAGTATATAAAAGTTATCCAAGCTT
TCAATATAACTACAGAAAACAAAAAGGAGCCCAATACAAAATGCGCAAAAAATGGCAAAAACAAATGACCTTCATGCCTCAAGAAATTGATCATCCGCAA
GCCAGAGAACTCGAAGCCATCAGTCAGTTGCTTGACAGCAAATCTACCATTTACGAAATCGTCTTGCAAGACCTTCCCAGTCAAGCGACATCCGGCTCGC
CAGGTGGCGCCCAGGGCATGACTGCCGAGCAGGTGATACGAGCCGCCATTGTAAAGGTCCTGTTCGGCTTTACATACGAAGAACTGGCCTTTCATTTGGT
CGATTCCATGAGCATCCGGCGCTTCTGTCGAATCGGCATTACCGACGAAGGGTTTAAAAAATCCACGCTTCATAAAAACATCAAAGCCCTGTCCGCCGAG
ACCTGGCAGTTGATCAACAAGGAGGTGCTGGCGCATGCCGAAGAAGCCGGGATTGAAAAAGGCCGTCAGGTGCGTATTGATTGCACGGTTGTTGAAAGCA
ATATCCATAAGCCGAGTGATTCTGTCCTTCTGTGGGACGCCGTCCGGGCTATTACCCGGTTATTGGAACGCGCCCAACAAGAGACCGGGAAGCAAAGGCT
TTTGTTCCATGACCACCGGCGGATCGCAAAAAAACGAATGCTGGCGATTCAATACACCCGTGACGCAAAAGCCCGAAAGCCCCTTTACAAAGACCTTGTC
AAAAAAACCCGCCAGTGCGTCTCCTATGCCAGGTCAGCCGTAAAAGCGCTGGAGCAATCCGTGGCCCATCCTTCCAGAACGGCATTGGCCATTGAACTGC
AGAGCTTTGTGCGCCTGACCGATCAGGTGATCCGTCAGACCGAGCTGCGCGTCTTCCAGGACCAGCAGGTTCCGTCGTCAGAAAAAATCGTCTCTTTGTT
TGAACCGCATACGGACATCATTGTCAAAGACCGCCGGGACACCTATTACGGACATAAAGTCTGTCTGACCGGCGGCAAATCAAATCTGATCCTTGATTGC
CTTATTGTTGAAGGCAACCCGGCCGATACCACACTGACAGAGACCATGCTGGATCGCCAGCATCAGATTTATAATCGTTACCCGCTGAAAGCCGCCCTTG
ATGGCGGATTTGCCTCCAAAGACAACCTGGCCAAAGCCAAAGAGAAAAAGATCAAAGACGTATGCTTTGCCAAAAAACGCGGGTTGTCTGAATTGGATAT
GTGTCGCAGCCATTATGTTTATAAACAGTTACGCCGCTTCCGTGCGGGCATCGAGGCCGGGATATCCTGGCTCAAACGGACCTTCGGCTTCAACCGCTGC
ATGTGGAAAGGCCTGCCGTCCTTTAAAAGCTATGTCTGGGCAACGATCGTGTCGGCAAATTTGCTGACCGTTGCCAGAAAACAACTGGCATAACCGGACC
CCGACATAACGATTTTGATAAGTCATGGGGATAGCTGTTCCCCAAAACTGATATTTTGTGGTATTTTGTTTGCTCAATAATTTTTTATCCCCAAAAAATA
AGGGGTGATAAAATTTTGCTCATAAATGTGCCAGATTAAAGACCCAAAATCGACAATTTATGGATGGACAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1353 bp450 aa1411493+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRKKWQKQMTFMPQEIDHPQARELEAISQLLDSKSTIYEIVLQDLPSQATSGSPGGAQGMTAEQVIRAAIVKVLFGFTYEELAFHLVDSMSIRRFCRIGI
TDEGFKKSTLHKNIKALSAETWQLINKEVLAHAEEAGIEKGRQVRIDCTVVESNIHKPSDSVLLWDAVRAITRLLERAQQETGKQRLLFHDHRRIAKKRM
LAIQYTRDAKARKPLYKDLVKKTRQCVSYARSAVKALEQSVAHPSRTALAIELQSFVRLTDQVIRQTELRVFQDQQVPSSEKIVSLFEPHTDIIVKDRRD
TYYGHKVCLTGGKSNLILDCLIVEGNPADTTLTETMLDRQHQIYNRYPLKAALDGGFASKDNLAKAKEKKIKDVCFAKKRGLSELDMCRSHYVYKQLRRF
RAGIEAGISWLKRTFGFNRCMWKGLPSFKSYVWATIVSANLLTVARKQLA

 

Blast result :
Comments
There is 6 perfect copies of ISDol1 on this genome.
References
1] ISfinder annotation (2008).

2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Wawrik,B. and Richardson,P. (2007) Direct submission GenBank.