ISDol1
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009943 | ND | Desulfococcus oleovorans | Desulfococcus oleovorans Hxd3 |
DNA section
IS Length : 1671 bp
Ends
IR Length : 14/16
IRL : GTGTCCATCCACAGATATAACTACTTGTAAAGAATAAAAAAAGCGCATTT
IRR : GTGTCCATCCATAAATTGTCGATTTTGGGTCTTTAATCTGGCACATTTAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATGAGTTCT | TACCTA | TAAAAGCCAA | 6 |
AACTTTTTGC | TATTTA | GGGAATTCCG | 6 |
CCCTCCAACC | TAGCTA | AGAAACAAGT | 6 |
GGATGGACAC | TAACTA | GGTTTTCAAT | 6 |
ATTTAAGTTT | TAACTA | GTGTCCATCC | 6 |
AAAATTTAGT | GGTACTA | AATAAAAAG | 7 |
DNA sequence
GTGTCCATCCACAGATATAACTACTTGTAAAGAATAAAAAAAGCGCATTTTGTACTGGTATTTTTTGTCTTGCTGTAGTATATAAAAGTTATCCAAGCTT
TCAATATAACTACAGAAAACAAAAAGGAGCCCAATACAAAATGCGCAAAAAATGGCAAAAACAAATGACCTTCATGCCTCAAGAAATTGATCATCCGCAA
GCCAGAGAACTCGAAGCCATCAGTCAGTTGCTTGACAGCAAATCTACCATTTACGAAATCGTCTTGCAAGACCTTCCCAGTCAAGCGACATCCGGCTCGC
CAGGTGGCGCCCAGGGCATGACTGCCGAGCAGGTGATACGAGCCGCCATTGTAAAGGTCCTGTTCGGCTTTACATACGAAGAACTGGCCTTTCATTTGGT
CGATTCCATGAGCATCCGGCGCTTCTGTCGAATCGGCATTACCGACGAAGGGTTTAAAAAATCCACGCTTCATAAAAACATCAAAGCCCTGTCCGCCGAG
ACCTGGCAGTTGATCAACAAGGAGGTGCTGGCGCATGCCGAAGAAGCCGGGATTGAAAAAGGCCGTCAGGTGCGTATTGATTGCACGGTTGTTGAAAGCA
ATATCCATAAGCCGAGTGATTCTGTCCTTCTGTGGGACGCCGTCCGGGCTATTACCCGGTTATTGGAACGCGCCCAACAAGAGACCGGGAAGCAAAGGCT
TTTGTTCCATGACCACCGGCGGATCGCAAAAAAACGAATGCTGGCGATTCAATACACCCGTGACGCAAAAGCCCGAAAGCCCCTTTACAAAGACCTTGTC
AAAAAAACCCGCCAGTGCGTCTCCTATGCCAGGTCAGCCGTAAAAGCGCTGGAGCAATCCGTGGCCCATCCTTCCAGAACGGCATTGGCCATTGAACTGC
AGAGCTTTGTGCGCCTGACCGATCAGGTGATCCGTCAGACCGAGCTGCGCGTCTTCCAGGACCAGCAGGTTCCGTCGTCAGAAAAAATCGTCTCTTTGTT
TGAACCGCATACGGACATCATTGTCAAAGACCGCCGGGACACCTATTACGGACATAAAGTCTGTCTGACCGGCGGCAAATCAAATCTGATCCTTGATTGC
CTTATTGTTGAAGGCAACCCGGCCGATACCACACTGACAGAGACCATGCTGGATCGCCAGCATCAGATTTATAATCGTTACCCGCTGAAAGCCGCCCTTG
ATGGCGGATTTGCCTCCAAAGACAACCTGGCCAAAGCCAAAGAGAAAAAGATCAAAGACGTATGCTTTGCCAAAAAACGCGGGTTGTCTGAATTGGATAT
GTGTCGCAGCCATTATGTTTATAAACAGTTACGCCGCTTCCGTGCGGGCATCGAGGCCGGGATATCCTGGCTCAAACGGACCTTCGGCTTCAACCGCTGC
ATGTGGAAAGGCCTGCCGTCCTTTAAAAGCTATGTCTGGGCAACGATCGTGTCGGCAAATTTGCTGACCGTTGCCAGAAAACAACTGGCATAACCGGACC
CCGACATAACGATTTTGATAAGTCATGGGGATAGCTGTTCCCCAAAACTGATATTTTGTGGTATTTTGTTTGCTCAATAATTTTTTATCCCCAAAAAATA
AGGGGTGATAAAATTTTGCTCATAAATGTGCCAGATTAAAGACCCAAAATCGACAATTTATGGATGGACAC
TCAATATAACTACAGAAAACAAAAAGGAGCCCAATACAAAATGCGCAAAAAATGGCAAAAACAAATGACCTTCATGCCTCAAGAAATTGATCATCCGCAA
GCCAGAGAACTCGAAGCCATCAGTCAGTTGCTTGACAGCAAATCTACCATTTACGAAATCGTCTTGCAAGACCTTCCCAGTCAAGCGACATCCGGCTCGC
CAGGTGGCGCCCAGGGCATGACTGCCGAGCAGGTGATACGAGCCGCCATTGTAAAGGTCCTGTTCGGCTTTACATACGAAGAACTGGCCTTTCATTTGGT
CGATTCCATGAGCATCCGGCGCTTCTGTCGAATCGGCATTACCGACGAAGGGTTTAAAAAATCCACGCTTCATAAAAACATCAAAGCCCTGTCCGCCGAG
ACCTGGCAGTTGATCAACAAGGAGGTGCTGGCGCATGCCGAAGAAGCCGGGATTGAAAAAGGCCGTCAGGTGCGTATTGATTGCACGGTTGTTGAAAGCA
ATATCCATAAGCCGAGTGATTCTGTCCTTCTGTGGGACGCCGTCCGGGCTATTACCCGGTTATTGGAACGCGCCCAACAAGAGACCGGGAAGCAAAGGCT
TTTGTTCCATGACCACCGGCGGATCGCAAAAAAACGAATGCTGGCGATTCAATACACCCGTGACGCAAAAGCCCGAAAGCCCCTTTACAAAGACCTTGTC
AAAAAAACCCGCCAGTGCGTCTCCTATGCCAGGTCAGCCGTAAAAGCGCTGGAGCAATCCGTGGCCCATCCTTCCAGAACGGCATTGGCCATTGAACTGC
AGAGCTTTGTGCGCCTGACCGATCAGGTGATCCGTCAGACCGAGCTGCGCGTCTTCCAGGACCAGCAGGTTCCGTCGTCAGAAAAAATCGTCTCTTTGTT
TGAACCGCATACGGACATCATTGTCAAAGACCGCCGGGACACCTATTACGGACATAAAGTCTGTCTGACCGGCGGCAAATCAAATCTGATCCTTGATTGC
CTTATTGTTGAAGGCAACCCGGCCGATACCACACTGACAGAGACCATGCTGGATCGCCAGCATCAGATTTATAATCGTTACCCGCTGAAAGCCGCCCTTG
ATGGCGGATTTGCCTCCAAAGACAACCTGGCCAAAGCCAAAGAGAAAAAGATCAAAGACGTATGCTTTGCCAAAAAACGCGGGTTGTCTGAATTGGATAT
GTGTCGCAGCCATTATGTTTATAAACAGTTACGCCGCTTCCGTGCGGGCATCGAGGCCGGGATATCCTGGCTCAAACGGACCTTCGGCTTCAACCGCTGC
ATGTGGAAAGGCCTGCCGTCCTTTAAAAGCTATGTCTGGGCAACGATCGTGTCGGCAAATTTGCTGACCGTTGCCAGAAAACAACTGGCATAACCGGACC
CCGACATAACGATTTTGATAAGTCATGGGGATAGCTGTTCCCCAAAACTGATATTTTGTGGTATTTTGTTTGCTCAATAATTTTTTATCCCCAAAAAATA
AGGGGTGATAAAATTTTGCTCATAAATGTGCCAGATTAAAGACCCAAAATCGACAATTTATGGATGGACAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1353 bp | 450 aa | 141 | 1493 | + | No |
Chemistry : DDE
ORF sequence :
MRKKWQKQMTFMPQEIDHPQARELEAISQLLDSKSTIYEIVLQDLPSQATSGSPGGAQGMTAEQVIRAAIVKVLFGFTYEELAFHLVDSMSIRRFCRIGI
TDEGFKKSTLHKNIKALSAETWQLINKEVLAHAEEAGIEKGRQVRIDCTVVESNIHKPSDSVLLWDAVRAITRLLERAQQETGKQRLLFHDHRRIAKKRM
LAIQYTRDAKARKPLYKDLVKKTRQCVSYARSAVKALEQSVAHPSRTALAIELQSFVRLTDQVIRQTELRVFQDQQVPSSEKIVSLFEPHTDIIVKDRRD
TYYGHKVCLTGGKSNLILDCLIVEGNPADTTLTETMLDRQHQIYNRYPLKAALDGGFASKDNLAKAKEKKIKDVCFAKKRGLSELDMCRSHYVYKQLRRF
RAGIEAGISWLKRTFGFNRCMWKGLPSFKSYVWATIVSANLLTVARKQLA
TDEGFKKSTLHKNIKALSAETWQLINKEVLAHAEEAGIEKGRQVRIDCTVVESNIHKPSDSVLLWDAVRAITRLLERAQQETGKQRLLFHDHRRIAKKRM
LAIQYTRDAKARKPLYKDLVKKTRQCVSYARSAVKALEQSVAHPSRTALAIELQSFVRLTDQVIRQTELRVFQDQQVPSSEKIVSLFEPHTDIIVKDRRD
TYYGHKVCLTGGKSNLILDCLIVEGNPADTTLTETMLDRQHQIYNRYPLKAALDGGFASKDNLAKAKEKKIKDVCFAKKRGLSELDMCRSHYVYKQLRRF
RAGIEAGISWLKRTFGFNRCMWKGLPSFKSYVWATIVSANLLTVARKQLA
Blast result :
Comments
There is 6 perfect copies of ISDol1 on this genome.
References
1] ISfinder annotation (2008).
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Wawrik,B. and Richardson,P. (2007) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Wawrik,B. and Richardson,P. (2007) Direct submission GenBank.