ISPeth1
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009454 | ND | Pelotomaculum thermopropionicum | Pelotomaculum thermopropionicum SI |
DNA section
IS Length : 1616 bp
Ends
IR Length : 28/34
IRL : GTGTCCCCTGAAAAAATCAGGGGGTTTTACAAAAGTAAAAGGAACTCGGC
IRR : GTGTCCCCTGAAAAAATCGATTTTTAAAAAACCTTATTCTCACGAGTTTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ATAAGTTCCT | TAATTA | AGATGTTTTC | 6 |
| AGCAAAATAC | TAGATA | AATATTAAAC | 6 |
DNA sequence
GTGTCCCCTGAAAAAATCAGGGGGTTTTACAAAAGTAAAAGGAACTCGGCACTCTGAAATGGAAATTGTTATTGACCAACAAACCAATTCCAAACGAGGG
GCCGAATTCCTTGCTTAATAAATTTCTTCATGGCCCCTCAAAAATCCTGTTTTTGAGGTGGGTTTCATGTTAAAACTCCGAGAGAATCAAATAAGCCTTT
GGGACACAGTTCTTCCCGAATCTTTCAGGTCCTTACCCGCTGAACTGGCCAAAATTGACGATATATTAGACGACCCAGTCTTCATGCAGCCGTTCATTGC
AAAATTCAATACCAGACGCGGCAGGCCGACCATACCCATTGAAACATACTTGCGGTTGATGTATTTAAAAAGGCGCTACCAACTGGGTTACGAGACCCTA
ATCAAAGAAGTTGGAGACAGCATTACCTGGCGCCGGTTCTGCCGGATTCCTATTGATGAAGAAATGCCCGACCCTACAACACTGATTAAGGCACGTCAGC
GTTACGGAGATGAAGTGGTCGAACAACTGAACGAATTACTGCTGCTCAAACTTCAGGATGAGAAGATTTTAAAAACCCGTAAACTGCGTGTAGATACAAC
CGTAGTCGAATCCAATATTCACCATCCAACAGATGCAACATTATTACACGATGGTGTCAAGGTAATTACCCGTTTTGTCAGTAAAATACGCAGAGTAGCC
TCGCAAGCTGCAAAAGGTTTTGCGGACCGAACCCAAGAAGTCAAGGAACAGATATTATCCATTGCCAAATTGCTGCGCCGCAGGACGGGGCAGTCCTGGG
AAGATATCAACGCAATAACCCAAAAAGTCACCGAGATAACCGAAGAAGTTTGCAATGAAGCTCTTGAAGTGATCAGCCGGGTTAACGACAAAGGCCGCAC
TTCTATTAAAGCGTTAAAAGACAAACTTAGTCAGGCTGTTGACTTAACCCAAAAATTGATTGACCAGGCCAAACAGGTGACATCCGGCAACCGAAACATT
CCCGACCGGATTGTGAGTTTCTTTGATCCAAAAGCACGCCCGATCAAGAAAGGCAAGCTGGGCAAAACGGCAGAATTCGGTTATAAACTGCGTATCGATG
AAACCGAAAGCGGATTCGTTACTGGATATCAACTGTACCAGGGGAATCCAGCAGACGATGGCCTTCTAATACCGGCTGTTGAACAACACAAAAAACGATT
CCGCTCTTCTCCGAGCGCGGTTGCCACAGACCGTGGATTTGGCAGCCAAAGCAATGAAGAAGCTTTACATACCCTTGGTGTTAGGCGCATTAGCTCCCCG
CTTAAGGGCAGAAAAAGCAAGAAACGGATGGAATACGAAGCCCAGCTTTGGTTTAAAGACCTGCAGCGGTTTCGAGCAGCCGGAGAAGCGAAAATTAGTT
TGTTAAAACGAAAGTATGGTTTAAACCGCAGCCTTTATAGGGGCTTTACTGGCTCAAAGACCTGGGTGGGCTTTGGAATTTGGGTCCATAATCTCAAAAG
AGCAGCCCAGATAATCTAAATACAAAGCCCACTAGGAATTTGGAATTTAAATTATTACCCCCCTGGAAAACTCGTGAGAATAAGGTTTTTTAAAAATCGA
TTTTTTCAGGGGACAC
GCCGAATTCCTTGCTTAATAAATTTCTTCATGGCCCCTCAAAAATCCTGTTTTTGAGGTGGGTTTCATGTTAAAACTCCGAGAGAATCAAATAAGCCTTT
GGGACACAGTTCTTCCCGAATCTTTCAGGTCCTTACCCGCTGAACTGGCCAAAATTGACGATATATTAGACGACCCAGTCTTCATGCAGCCGTTCATTGC
AAAATTCAATACCAGACGCGGCAGGCCGACCATACCCATTGAAACATACTTGCGGTTGATGTATTTAAAAAGGCGCTACCAACTGGGTTACGAGACCCTA
ATCAAAGAAGTTGGAGACAGCATTACCTGGCGCCGGTTCTGCCGGATTCCTATTGATGAAGAAATGCCCGACCCTACAACACTGATTAAGGCACGTCAGC
GTTACGGAGATGAAGTGGTCGAACAACTGAACGAATTACTGCTGCTCAAACTTCAGGATGAGAAGATTTTAAAAACCCGTAAACTGCGTGTAGATACAAC
CGTAGTCGAATCCAATATTCACCATCCAACAGATGCAACATTATTACACGATGGTGTCAAGGTAATTACCCGTTTTGTCAGTAAAATACGCAGAGTAGCC
TCGCAAGCTGCAAAAGGTTTTGCGGACCGAACCCAAGAAGTCAAGGAACAGATATTATCCATTGCCAAATTGCTGCGCCGCAGGACGGGGCAGTCCTGGG
AAGATATCAACGCAATAACCCAAAAAGTCACCGAGATAACCGAAGAAGTTTGCAATGAAGCTCTTGAAGTGATCAGCCGGGTTAACGACAAAGGCCGCAC
TTCTATTAAAGCGTTAAAAGACAAACTTAGTCAGGCTGTTGACTTAACCCAAAAATTGATTGACCAGGCCAAACAGGTGACATCCGGCAACCGAAACATT
CCCGACCGGATTGTGAGTTTCTTTGATCCAAAAGCACGCCCGATCAAGAAAGGCAAGCTGGGCAAAACGGCAGAATTCGGTTATAAACTGCGTATCGATG
AAACCGAAAGCGGATTCGTTACTGGATATCAACTGTACCAGGGGAATCCAGCAGACGATGGCCTTCTAATACCGGCTGTTGAACAACACAAAAAACGATT
CCGCTCTTCTCCGAGCGCGGTTGCCACAGACCGTGGATTTGGCAGCCAAAGCAATGAAGAAGCTTTACATACCCTTGGTGTTAGGCGCATTAGCTCCCCG
CTTAAGGGCAGAAAAAGCAAGAAACGGATGGAATACGAAGCCCAGCTTTGGTTTAAAGACCTGCAGCGGTTTCGAGCAGCCGGAGAAGCGAAAATTAGTT
TGTTAAAACGAAAGTATGGTTTAAACCGCAGCCTTTATAGGGGCTTTACTGGCTCAAAGACCTGGGTGGGCTTTGGAATTTGGGTCCATAATCTCAAAAG
AGCAGCCCAGATAATCTAAATACAAAGCCCACTAGGAATTTGGAATTTAAATTATTACCCCCCTGGAAAACTCGTGAGAATAAGGTTTTTTAAAAATCGA
TTTTTTCAGGGGACAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1353 bp | 450 aa | 167 | 1519 | + | No |
Chemistry : DDE
ORF sequence :
MLKLRENQISLWDTVLPESFRSLPAELAKIDDILDDPVFMQPFIAKFNTRRGRPTIPIETYLRLMYLKRRYQLGYETLIKEVGDSITWRRFCRIPIDEEM
PDPTTLIKARQRYGDEVVEQLNELLLLKLQDEKILKTRKLRVDTTVVESNIHHPTDATLLHDGVKVITRFVSKIRRVASQAAKGFADRTQEVKEQILSIA
KLLRRRTGQSWEDINAITQKVTEITEEVCNEALEVISRVNDKGRTSIKALKDKLSQAVDLTQKLIDQAKQVTSGNRNIPDRIVSFFDPKARPIKKGKLGK
TAEFGYKLRIDETESGFVTGYQLYQGNPADDGLLIPAVEQHKKRFRSSPSAVATDRGFGSQSNEEALHTLGVRRISSPLKGRKSKKRMEYEAQLWFKDLQ
RFRAAGEAKISLLKRKYGLNRSLYRGFTGSKTWVGFGIWVHNLKRAAQII
PDPTTLIKARQRYGDEVVEQLNELLLLKLQDEKILKTRKLRVDTTVVESNIHHPTDATLLHDGVKVITRFVSKIRRVASQAAKGFADRTQEVKEQILSIA
KLLRRRTGQSWEDINAITQKVTEITEEVCNEALEVISRVNDKGRTSIKALKDKLSQAVDLTQKLIDQAKQVTSGNRNIPDRIVSFFDPKARPIKKGKLGK
TAEFGYKLRIDETESGFVTGYQLYQGNPADDGLLIPAVEQHKKRFRSSPSAVATDRGFGSQSNEEALHTLGVRRISSPLKGRKSKKRMEYEAQLWFKDLQ
RFRAAGEAKISLLKRKYGLNRSLYRGFTGSKTWVGFGIWVHNLKRAAQII
Blast result :
Comments
ISPeth1 is 64% aa similar to ISCde2.
References
1] ISfinder annotation (2010).
2] Kosaka,T., Kato,S., Shimoyama,T., Ishii,S., Abe,T. and Watanabe,K. (2008) Genome Res. 18 (3), 442-448
3] Kosaka,T., Uchiyama,T., Ishii,S., Enoki,M., Imachi,H., Kamagata,Y., Ohashi,A., Harada,H., Ikenaga,H. and Watanabe,K. (2006) J. Bacteriol. 188 (1), 202-210.
4] Watanabe,K. and Kosaka,T. (2007) Direct submission GenBank.
2] Kosaka,T., Kato,S., Shimoyama,T., Ishii,S., Abe,T. and Watanabe,K. (2008) Genome Res. 18 (3), 442-448
3] Kosaka,T., Uchiyama,T., Ishii,S., Enoki,M., Imachi,H., Kamagata,Y., Ohashi,A., Harada,H., Ikenaga,H. and Watanabe,K. (2006) J. Bacteriol. 188 (1), 202-210.
4] Watanabe,K. and Kosaka,T. (2007) Direct submission GenBank.