ISCde2
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_010424 | ND | Candidatus Desulforudis | Candidatus Desulforudis audaxviator MP104C |
DNA section
IS Length : 1704 bp
Ends
IR Length : 49/50
IRL : GATTCTGCTGAAAAACTCAGCCATAAAGATCCTTGAAAACCTAGATAAAT
IRR : GATTCTGCTGAAAAACTCAGCCATAAAGATCCTTGAAAACCTAGATAGAT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTGCACGCAA | TATCTA | TCGCTATGCA | 6 |
| CAATCCCTCG | TAGGTA | GGCTGGAAAC | 6 |
DNA sequence
GATTCTGCTGAAAAACTCAGCCATAAAGATCCTTGAAAACCTAGATAAATCAAGGGATTCCGGTCTCCGTGGCGAATTGTTTAAGGTGACCAAACCAAAA
CAAACACCAGGAGGGAATCCCTATGCTGATCATGGTTCAACATAAAAACTTCGGTTCCTGCGGAGGTGAGCAGTAATGCTATGCCTCCGACAGGAAGAAA
GTCGACAAGTATCATTCTTGGACTACATATTGCCGCCGGAGGTGCTTGAACTCCCGGAAGATCTGGCCAAACTCGACGCCTGGTTGGACGATGAGCGCTT
CTTCGAACCATTTCAGGACAAGTACCATCGGTGTTTGGGGCGACCGTCCGTACCGGCGGAAACCTATTTGCGTATGACAGCACTCAAGCACCAGTACAGA
CTCAGCGACCGGCAGGTCTGTGCTCTGGTTAAGGATCGGATCAGCTGGCGCCGGTTTTGTCGCATTCCCTGGAATAAGCCGGTGCCCCATCCCTCCAGCC
TGACTAAAATCCGGCAGCGGTTGGATGCAGACGGGAGCGATCACATGGCGGCACTGAACGCTCATCTGGTCCGTAAGGCGCAGGAAGAAAAGCTCTTAAA
AAGCCGCAACAAAGTGCGAGTGGACACCACCGCAATCGAAGCCAACATCCACCATCCCACCGATTCCGGCTTGATCGCGGACTCGGTACGGGTGGTGACG
CGTCTGGCGAAAAAGATCCAGGCCGTCGCCGATAATACCAGTGTGGCCATTCGGGATCGCACGCGCAGTATCAAGAAACGGGTGCTGGCGATCGCCAAAG
TACTGAAACGGCGCACCGGAGAATCCATCCAGGAAGTGCGGCGGATCACCGGCGAAATGGCCGACATCGCTGAAAAGACCCTGCAGGATGCCCGGAATGT
AGTACAGCATCTGCACCAGCAGGCCCGGCACCTTGCGGGAACCGCCCGGGACGAAAAGCGACGCCTGGCCGCTCGGTTGGAGAAAATCTTGGACCTGGGC
GAACAGATCGTCAGCCAGGCGCGTCAGGTCAACGCCGGCCAACTAAACCTGCCGGAGCGGGTGGTAAGCCTTTCCGACCCGGAGGCCCGGCCCATTCGGC
GCGGCAAAGCACATAAAGAAACCGAGTTCGGCTACAAAGTGCGCCTGACCGAAAGCACGGAACGCTTGGTGACCGAGTATGACGTGATGATGGGTAACCC
CCCGGACCATCAATTGCTCATTCCAGGAATTGCGGAGCACATCCACCGCACCGGCCGGGTGCCAGAAGGTACCGCTACCGATCGTGGTTTCTGGAATGCC
GGTAACGAAAGCGCCTTACAAGCTCTGGGTATACGTAAAATCAGCCTGCCTTATAAAGGTAAACGCAGTCACAGTCGTACCGGACACGAGCGCCAGTCCT
GGTTTCGGCGGCTGCAACGCTGGCGAGCCGGTCAGGAAGGAACGATCAGCGTGCTGAAAAGGCGATATGGACTCAAGCGAACGCTATACCGCGGACTGGC
CGGATGTCGCCGCTGGGTGGGCGGGGCCGTCTGGGGATACAACCTGAACCGAATCGCTAAGTTGATCTAAGCCCAGGCAGGAACGTTAAACCATGATCAA
ATTGTCAAGGATCAACTGCCGAGAAGTAGTCGGCAAAGTGCTTTTTTCAGCAGAATCTATCTAGGTTTTCAAGGATCTTTATGGCTGAGTTTTTCAGCAG
AATC
CAAACACCAGGAGGGAATCCCTATGCTGATCATGGTTCAACATAAAAACTTCGGTTCCTGCGGAGGTGAGCAGTAATGCTATGCCTCCGACAGGAAGAAA
GTCGACAAGTATCATTCTTGGACTACATATTGCCGCCGGAGGTGCTTGAACTCCCGGAAGATCTGGCCAAACTCGACGCCTGGTTGGACGATGAGCGCTT
CTTCGAACCATTTCAGGACAAGTACCATCGGTGTTTGGGGCGACCGTCCGTACCGGCGGAAACCTATTTGCGTATGACAGCACTCAAGCACCAGTACAGA
CTCAGCGACCGGCAGGTCTGTGCTCTGGTTAAGGATCGGATCAGCTGGCGCCGGTTTTGTCGCATTCCCTGGAATAAGCCGGTGCCCCATCCCTCCAGCC
TGACTAAAATCCGGCAGCGGTTGGATGCAGACGGGAGCGATCACATGGCGGCACTGAACGCTCATCTGGTCCGTAAGGCGCAGGAAGAAAAGCTCTTAAA
AAGCCGCAACAAAGTGCGAGTGGACACCACCGCAATCGAAGCCAACATCCACCATCCCACCGATTCCGGCTTGATCGCGGACTCGGTACGGGTGGTGACG
CGTCTGGCGAAAAAGATCCAGGCCGTCGCCGATAATACCAGTGTGGCCATTCGGGATCGCACGCGCAGTATCAAGAAACGGGTGCTGGCGATCGCCAAAG
TACTGAAACGGCGCACCGGAGAATCCATCCAGGAAGTGCGGCGGATCACCGGCGAAATGGCCGACATCGCTGAAAAGACCCTGCAGGATGCCCGGAATGT
AGTACAGCATCTGCACCAGCAGGCCCGGCACCTTGCGGGAACCGCCCGGGACGAAAAGCGACGCCTGGCCGCTCGGTTGGAGAAAATCTTGGACCTGGGC
GAACAGATCGTCAGCCAGGCGCGTCAGGTCAACGCCGGCCAACTAAACCTGCCGGAGCGGGTGGTAAGCCTTTCCGACCCGGAGGCCCGGCCCATTCGGC
GCGGCAAAGCACATAAAGAAACCGAGTTCGGCTACAAAGTGCGCCTGACCGAAAGCACGGAACGCTTGGTGACCGAGTATGACGTGATGATGGGTAACCC
CCCGGACCATCAATTGCTCATTCCAGGAATTGCGGAGCACATCCACCGCACCGGCCGGGTGCCAGAAGGTACCGCTACCGATCGTGGTTTCTGGAATGCC
GGTAACGAAAGCGCCTTACAAGCTCTGGGTATACGTAAAATCAGCCTGCCTTATAAAGGTAAACGCAGTCACAGTCGTACCGGACACGAGCGCCAGTCCT
GGTTTCGGCGGCTGCAACGCTGGCGAGCCGGTCAGGAAGGAACGATCAGCGTGCTGAAAAGGCGATATGGACTCAAGCGAACGCTATACCGCGGACTGGC
CGGATGTCGCCGCTGGGTGGGCGGGGCCGTCTGGGGATACAACCTGAACCGAATCGCTAAGTTGATCTAAGCCCAGGCAGGAACGTTAAACCATGATCAA
ATTGTCAAGGATCAACTGCCGAGAAGTAGTCGGCAAAGTGCTTTTTTCAGCAGAATCTATCTAGGTTTTCAAGGATCTTTATGGCTGAGTTTTTCAGCAG
AATC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1395 bp | 464 aa | 176 | 1570 | + | No |
Chemistry : DDE
ORF sequence :
MLCLRQEESRQVSFLDYILPPEVLELPEDLAKLDAWLDDERFFEPFQDKYHRCLGRPSVPAETYLRMTALKHQYRLSDRQVCALVKDRISWRRFCRIPWN
KPVPHPSSLTKIRQRLDADGSDHMAALNAHLVRKAQEEKLLKSRNKVRVDTTAIEANIHHPTDSGLIADSVRVVTRLAKKIQAVADNTSVAIRDRTRSIK
KRVLAIAKVLKRRTGESIQEVRRITGEMADIAEKTLQDARNVVQHLHQQARHLAGTARDEKRRLAARLEKILDLGEQIVSQARQVNAGQLNLPERVVSLS
DPEARPIRRGKAHKETEFGYKVRLTESTERLVTEYDVMMGNPPDHQLLIPGIAEHIHRTGRVPEGTATDRGFWNAGNESALQALGIRKISLPYKGKRSHS
RTGHERQSWFRRLQRWRAGQEGTISVLKRRYGLKRTLYRGLAGCRRWVGGAVWGYNLNRIAKLI
KPVPHPSSLTKIRQRLDADGSDHMAALNAHLVRKAQEEKLLKSRNKVRVDTTAIEANIHHPTDSGLIADSVRVVTRLAKKIQAVADNTSVAIRDRTRSIK
KRVLAIAKVLKRRTGESIQEVRRITGEMADIAEKTLQDARNVVQHLHQQARHLAGTARDEKRRLAARLEKILDLGEQIVSQARQVNAGQLNLPERVVSLS
DPEARPIRRGKAHKETEFGYKVRLTESTERLVTEYDVMMGNPPDHQLLIPGIAEHIHRTGRVPEGTATDRGFWNAGNESALQALGIRKISLPYKGKRSHS
RTGHERQSWFRRLQRWRAGQEGTISVLKRRYGLKRTLYRGLAGCRRWVGGAVWGYNLNRIAKLI
Blast result :
Comments
ISCde2 is 49% aa similar to ISDth2.
References
1] ISfinder annotation (2010).
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Lowry,S.R., Larimer,F., Land,M.L., Hauser,L., Kyrpides,N., Ivanova,N.N. and Richardson,P. (2007) Direct submission Genbank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Lowry,S.R., Larimer,F., Land,M.L., Hauser,L., Kyrpides,N., Ivanova,N.N. and Richardson,P. (2007) Direct submission Genbank.