ISMaq5
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008740 | ND | Marinobacter aquaeolei | Marinobacter aquaeolei VT8 |
DNA section
IS Length : 1677 bp
Ends
IR Length : 16
IRL : GTGCCCATCCAGAAACTAATAAACTGCTGATTTTCAAATAATAATTCTGA
IRR : GTGCCCATCCAGAAACACGCGTTTTGAACCAGTTTGGCTCATTTCTGGAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGTGTTGGGC | TAACTA | GAAGCATGAA | 6 |
| CAAAAGAAAA | TAGTTA | GAGAGATTTT | 6 |
| CGTCGGTCCC | TAGCTG | GTTGTCCCAT | 6 |
| CGCTTGTGAC | TAGCTT | GTCCCATGAA | 6 |
DNA sequence
GTGCCCATCCAGAAACTAATAAACTGCTGATTTTCAAATAATAATTCTGAGAATGGATAAAAAAATCCTCTTGGTTCTGGTATGTTTTAAGTGCGAACAA
AAAACATCAACAACCAAGAGGATCCCGCATGCGAGAAACCCGCAATGCTCAGGCCAGTATATTCGAACATTACTCGAATCACGAGTATGGCATCCGGCTC
CAGAAGCTGTCGGAGGTCCTGGACAGGCACCCCGGGATTCTGGATCTGGTGGCTGCGGACTTGATAGATACGTCCGTTGCCGCCGTGGGGCGAACCGGCC
TCAGCGCAGAGAGTGTTTTGCGTTGCCTGCTGCTGAAGCAACAACGGGGTTTGAGCTATGAGCAACTGGCGTTTCATTTGTCGGACTCGGTAACCTACCG
AACGTTTGCCCGATTGCCGGCTCACCTGTCACCCAGCCGGTCCTGCCTGCAGTCCACCATCCGGAGTATCAAGCCGGAAACCCTGGAGCAGGCGCATCAG
GTACTGACAAGAAGCCTGCTGGACACGGGGGTGGCTTCCCTGGATAAGCTGCGCATCGACAGTACCGTGGTGGCCAGCCCTATTGCTCCGCCCAGTGACA
GCCAGTTGCTGAATGATGGCGTGCGTGTGATCAGTCGGCTGCTGGCAAAAAGTAAAACCGACACCGGCCTGAAGGTCCGCTTTACGGACAAGCGCAAAGC
GGCAAAGTCACTGGCCTTTCGCATATTCAACGCAAAGCAGGCGGTCAAGAACGAACTCTATCCCGAGTTGCTGAAGATCACTCGACGGGTCGTGAAGCAG
GCGGATCGGGGACATCAGCAGGTCGTTGACGGTACCGAGGCTTGCGCCGCCACACGGAAATGGCTGGAGGCTCTGGCACACTACAGAGACCTGACCGCGC
GGGTGATCGAGCAAACGGAACGTCGAGTCATCCAGGGCGAGCGGGTGCCCTCGGGGGACAAAATCGTCAGCCTGTTCGAGCCGCACACAGATATTATCGT
CAAGGGATTCCGGGATGTGCAGTACGGCCACAAGATCAACCTGAGCAGCGAAGTGAGAGGTTTTATTACCGCGTTAACCATCGAAGAGGGCAATCCCGGT
GACAAGACCCTGTTCCTGCCGGTTCTGGATTATCACCGTTCTGTTCTGGGCAAGTTGCCCCGTTCAGTGGTTGCCGATGGCGGCTACGCCAGTCAGGCGA
ACGTCGCGGCCGGACGCGCCATGGGGCTTAAGCACGTTGTATTTCACAAACCCGTGGGCGTATCGCTCACCGCGATGGGCGTGAAGTCGAAGACCTTTAA
GGCGCTGCGGCATTTCCGTGCCGGCATTGAGGGCAATATCTCAGAATTGAAACGGGCCTTTGGTGCCGCGAAAGCGATGTGGAAAGGTCACGATGGCTTC
AAGGCGTTTGTCTGGGCCTCGGCTCTGAGTTACAACCTGGTTCGGCTGGCACGACTCGGCCCCGATTAGCCTACGGCTTGGGCCTCAAAAGCTGTTGAAA
GGATGCATGGCCAGGCCTTGCAGTGCATACCTGTGGCCTGAATTTGGACTGATTGATCAGGTAATGGCCAAACTGACCGGTATTCAATCGCCTTCAATTT
TTTGAAGGCACTCAGCTAAGCGCCTATTTCCAGAAATGAGCCAAACTGGTTCAAAACGCGTGTTTCTGGATGGGCAC
AAAACATCAACAACCAAGAGGATCCCGCATGCGAGAAACCCGCAATGCTCAGGCCAGTATATTCGAACATTACTCGAATCACGAGTATGGCATCCGGCTC
CAGAAGCTGTCGGAGGTCCTGGACAGGCACCCCGGGATTCTGGATCTGGTGGCTGCGGACTTGATAGATACGTCCGTTGCCGCCGTGGGGCGAACCGGCC
TCAGCGCAGAGAGTGTTTTGCGTTGCCTGCTGCTGAAGCAACAACGGGGTTTGAGCTATGAGCAACTGGCGTTTCATTTGTCGGACTCGGTAACCTACCG
AACGTTTGCCCGATTGCCGGCTCACCTGTCACCCAGCCGGTCCTGCCTGCAGTCCACCATCCGGAGTATCAAGCCGGAAACCCTGGAGCAGGCGCATCAG
GTACTGACAAGAAGCCTGCTGGACACGGGGGTGGCTTCCCTGGATAAGCTGCGCATCGACAGTACCGTGGTGGCCAGCCCTATTGCTCCGCCCAGTGACA
GCCAGTTGCTGAATGATGGCGTGCGTGTGATCAGTCGGCTGCTGGCAAAAAGTAAAACCGACACCGGCCTGAAGGTCCGCTTTACGGACAAGCGCAAAGC
GGCAAAGTCACTGGCCTTTCGCATATTCAACGCAAAGCAGGCGGTCAAGAACGAACTCTATCCCGAGTTGCTGAAGATCACTCGACGGGTCGTGAAGCAG
GCGGATCGGGGACATCAGCAGGTCGTTGACGGTACCGAGGCTTGCGCCGCCACACGGAAATGGCTGGAGGCTCTGGCACACTACAGAGACCTGACCGCGC
GGGTGATCGAGCAAACGGAACGTCGAGTCATCCAGGGCGAGCGGGTGCCCTCGGGGGACAAAATCGTCAGCCTGTTCGAGCCGCACACAGATATTATCGT
CAAGGGATTCCGGGATGTGCAGTACGGCCACAAGATCAACCTGAGCAGCGAAGTGAGAGGTTTTATTACCGCGTTAACCATCGAAGAGGGCAATCCCGGT
GACAAGACCCTGTTCCTGCCGGTTCTGGATTATCACCGTTCTGTTCTGGGCAAGTTGCCCCGTTCAGTGGTTGCCGATGGCGGCTACGCCAGTCAGGCGA
ACGTCGCGGCCGGACGCGCCATGGGGCTTAAGCACGTTGTATTTCACAAACCCGTGGGCGTATCGCTCACCGCGATGGGCGTGAAGTCGAAGACCTTTAA
GGCGCTGCGGCATTTCCGTGCCGGCATTGAGGGCAATATCTCAGAATTGAAACGGGCCTTTGGTGCCGCGAAAGCGATGTGGAAAGGTCACGATGGCTTC
AAGGCGTTTGTCTGGGCCTCGGCTCTGAGTTACAACCTGGTTCGGCTGGCACGACTCGGCCCCGATTAGCCTACGGCTTGGGCCTCAAAAGCTGTTGAAA
GGATGCATGGCCAGGCCTTGCAGTGCATACCTGTGGCCTGAATTTGGACTGATTGATCAGGTAATGGCCAAACTGACCGGTATTCAATCGCCTTCAATTT
TTTGAAGGCACTCAGCTAAGCGCCTATTTCCAGAAATGAGCCAAACTGGTTCAAAACGCGTGTTTCTGGATGGGCAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1341 bp | 446 aa | 129 | 1469 | + | No |
Chemistry : DDE
ORF sequence :
MRETRNAQASIFEHYSNHEYGIRLQKLSEVLDRHPGILDLVAADLIDTSVAAVGRTGLSAESVLRCLLLKQQRGLSYEQLAFHLSDSVTYRTFARLPAHL
SPSRSCLQSTIRSIKPETLEQAHQVLTRSLLDTGVASLDKLRIDSTVVASPIAPPSDSQLLNDGVRVISRLLAKSKTDTGLKVRFTDKRKAAKSLAFRIF
NAKQAVKNELYPELLKITRRVVKQADRGHQQVVDGTEACAATRKWLEALAHYRDLTARVIEQTERRVIQGERVPSGDKIVSLFEPHTDIIVKGFRDVQYG
HKINLSSEVRGFITALTIEEGNPGDKTLFLPVLDYHRSVLGKLPRSVVADGGYASQANVAAGRAMGLKHVVFHKPVGVSLTAMGVKSKTFKALRHFRAGI
EGNISELKRAFGAAKAMWKGHDGFKAFVWASALSYNLVRLARLGPD
SPSRSCLQSTIRSIKPETLEQAHQVLTRSLLDTGVASLDKLRIDSTVVASPIAPPSDSQLLNDGVRVISRLLAKSKTDTGLKVRFTDKRKAAKSLAFRIF
NAKQAVKNELYPELLKITRRVVKQADRGHQQVVDGTEACAATRKWLEALAHYRDLTARVIEQTERRVIQGERVPSGDKIVSLFEPHTDIIVKGFRDVQYG
HKINLSSEVRGFITALTIEEGNPGDKTLFLPVLDYHRSVLGKLPRSVVADGGYASQANVAAGRAMGLKHVVFHKPVGVSLTAMGVKSKTFKALRHFRAGI
EGNISELKRAFGAAKAMWKGHDGFKAFVWASALSYNLVRLARLGPD
Blast result :
Comments
ISMaq5 is 62% aa similar to ISRsp17.
References
1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Edwards,K. and Richardson,P. (2006) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Edwards,K. and Richardson,P. (2006) Direct submission GenBank.