ISRle10
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008380 | ND | Rhizobium leguminosarum | Rhizobium leguminosarum bv. viciae 3841 |
DNA section
IS Length : 1665 bp
Ends
IR Length : 17
IRL : GTGCCCGTCCATAAACGGTAAACTGCTGAAATTATTGCGGGAATCGCGCA
IRR : GTGCCCGTCCATAAACGCCTGTTTTTCCGGGTTTTTCAAAGGTTGTTTGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCGGGACGGC | TAGACTA | TAATCAGGGC | 7 |
| TTGCGCTCGC | TAGTCTA | GACTAAATGT | 7 |
DNA sequence
GTGCCCGTCCATAAACGGTAAACTGCTGAAATTATTGCGGGAATCGCGCAATCTCCGCGGGCAAAGCCCGGCGGTTTCAGGTATACTTTAGATCAAGCTA
CTGATTCTAAGGACAAACCCGTAACCGCCGGAGCCGACAATGCGCCAAGAACGCACGGTCCAAACCAGTGTATTCGATCTTTTCGCCGAACACGAGATCG
GTCGTGAACTGAGGGCGATGTCGCAATGGCTGGATGAGCATGGCGATTTGCTCGGGCTGGTGACGCGGGACCTGCGCCGACATGGTCTCAAGGAGACCGG
CCGCGAGGGGCTGCCGGCCGAGGCTGTGCTGCGTTGCGCGCTGCTCAAGCAGCATCGCCAGTTGAGTTATCAGGAGTTGGCCTTCCATCTCGAAGACTCC
GCCTCGTTCCGAGCCTTTGCCCGGCTGCCGTGGGGGTGGAGCCCGAAGAAGTCGGTCTTGCACAAGACGATCAGTGCGATCCGGGCGCAAACCTTTGAAG
AGATCAACCGGGTACTGCTGGCGAGCGCCCGGCAGGAGAAGCTGGAAAGTGGCAAGGTCCTGCGTGTGGACAGCACCGTCACCGCCGCACTGATCCATGA
GCCGAGTGACAGCAGCCTGTTATGGGACGCCGTACGGGTAATGGTGCGGCTGTTGCAGCAGGCAGATGCACTGGGTAGTGCCATCCCATGGCACGACCAC
CGCCGCGCGGCGAAGAAGCGATCCCGGGCGATCGAATATACCCGCGGCCGTCCCAAACGGATCAAGTACTACCGCGAACTGCTCAAGATCACGCGCACCA
CCTTGAGCTATCTGCAGCAGGCGAGTGAACAGTTGCCCCTGACGGCGGGCCTGGCCGGCGAGCTATGGCAGGCCCAGCTCCGCCGCTACCGGCCGCTGAT
CGAGCGGATCATCGCCCAGACCGAACGGCGGGTCCTGGCCGGCGAGGCGGTGCCGGCTGGCGAGAAACTGGTGAGCCTGTTCGAGCCGCATGCCGACATC
ATCGTCAAGGGCAGCCGTGATGTCGACTACGGCCACAAACTCAATCTGACCACCGGCAGAAGCGGACTGATCCTTGACCTCGTCGTGGAAGCCGGCAACC
CGGCCGATAGCGAACGGTTGCAGCCAATGCTGGAACGCCACATCGCTTTCTATGGCGCGGCGCCACGTCAGGCGGCCGCCGACGGCGGCTATGCCAGCCG
CACCAATCTGAGCCAGGCCAAAGCCTGGGGCATTCGCGACATGGCCTTCCACAAGAAGTGCGGCCTCAAGATCGAAGACATGGTCAAGAGCCGCTGGGTC
TATCGCAAGCTCAGAAACTTCCGCGCCGGCATCGAGGCCGGCATCTCTTGCCTGAAACGCGCTTATGGCTTGGGGCGCTGCACCTGGCGTGGGCTCGACC
ACTTCAAGGCTTATGTCTGGTCCTCGGTGGTCGCTTACAATCTCGCCCTCTTCGCCCGCCTCAGGCCGACCTGACGCCCCTCATCTGGCAGCGCTCACAG
CACGCCCGGCAAGCCTCGGCCGATACTCCATGATCCCATTGCCGCCAAATCGCTCTTCCGGCCTCAATCTGCATCGCCTTGTGCCAGCACGTCCTCCAAA
AATACGCCTCAGCCGGCAAACAACCTTTGAAAAACCCGGAAAAACAGGCGTTTATGGACGGGCAC
CTGATTCTAAGGACAAACCCGTAACCGCCGGAGCCGACAATGCGCCAAGAACGCACGGTCCAAACCAGTGTATTCGATCTTTTCGCCGAACACGAGATCG
GTCGTGAACTGAGGGCGATGTCGCAATGGCTGGATGAGCATGGCGATTTGCTCGGGCTGGTGACGCGGGACCTGCGCCGACATGGTCTCAAGGAGACCGG
CCGCGAGGGGCTGCCGGCCGAGGCTGTGCTGCGTTGCGCGCTGCTCAAGCAGCATCGCCAGTTGAGTTATCAGGAGTTGGCCTTCCATCTCGAAGACTCC
GCCTCGTTCCGAGCCTTTGCCCGGCTGCCGTGGGGGTGGAGCCCGAAGAAGTCGGTCTTGCACAAGACGATCAGTGCGATCCGGGCGCAAACCTTTGAAG
AGATCAACCGGGTACTGCTGGCGAGCGCCCGGCAGGAGAAGCTGGAAAGTGGCAAGGTCCTGCGTGTGGACAGCACCGTCACCGCCGCACTGATCCATGA
GCCGAGTGACAGCAGCCTGTTATGGGACGCCGTACGGGTAATGGTGCGGCTGTTGCAGCAGGCAGATGCACTGGGTAGTGCCATCCCATGGCACGACCAC
CGCCGCGCGGCGAAGAAGCGATCCCGGGCGATCGAATATACCCGCGGCCGTCCCAAACGGATCAAGTACTACCGCGAACTGCTCAAGATCACGCGCACCA
CCTTGAGCTATCTGCAGCAGGCGAGTGAACAGTTGCCCCTGACGGCGGGCCTGGCCGGCGAGCTATGGCAGGCCCAGCTCCGCCGCTACCGGCCGCTGAT
CGAGCGGATCATCGCCCAGACCGAACGGCGGGTCCTGGCCGGCGAGGCGGTGCCGGCTGGCGAGAAACTGGTGAGCCTGTTCGAGCCGCATGCCGACATC
ATCGTCAAGGGCAGCCGTGATGTCGACTACGGCCACAAACTCAATCTGACCACCGGCAGAAGCGGACTGATCCTTGACCTCGTCGTGGAAGCCGGCAACC
CGGCCGATAGCGAACGGTTGCAGCCAATGCTGGAACGCCACATCGCTTTCTATGGCGCGGCGCCACGTCAGGCGGCCGCCGACGGCGGCTATGCCAGCCG
CACCAATCTGAGCCAGGCCAAAGCCTGGGGCATTCGCGACATGGCCTTCCACAAGAAGTGCGGCCTCAAGATCGAAGACATGGTCAAGAGCCGCTGGGTC
TATCGCAAGCTCAGAAACTTCCGCGCCGGCATCGAGGCCGGCATCTCTTGCCTGAAACGCGCTTATGGCTTGGGGCGCTGCACCTGGCGTGGGCTCGACC
ACTTCAAGGCTTATGTCTGGTCCTCGGTGGTCGCTTACAATCTCGCCCTCTTCGCCCGCCTCAGGCCGACCTGACGCCCCTCATCTGGCAGCGCTCACAG
CACGCCCGGCAAGCCTCGGCCGATACTCCATGATCCCATTGCCGCCAAATCGCTCTTCCGGCCTCAATCTGCATCGCCTTGTGCCAGCACGTCCTCCAAA
AATACGCCTCAGCCGGCAAACAACCTTTGAAAAACCCGGAAAAACAGGCGTTTATGGACGGGCAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1335 bp | 444 aa | 140 | 1474 | + | No |
Chemistry : DDE
ORF sequence :
MRQERTVQTSVFDLFAEHEIGRELRAMSQWLDEHGDLLGLVTRDLRRHGLKETGREGLPAEAVLRCALLKQHRQLSYQELAFHLEDSASFRAFARLPWGW
SPKKSVLHKTISAIRAQTFEEINRVLLASARQEKLESGKVLRVDSTVTAALIHEPSDSSLLWDAVRVMVRLLQQADALGSAIPWHDHRRAAKKRSRAIEY
TRGRPKRIKYYRELLKITRTTLSYLQQASEQLPLTAGLAGELWQAQLRRYRPLIERIIAQTERRVLAGEAVPAGEKLVSLFEPHADIIVKGSRDVDYGHK
LNLTTGRSGLILDLVVEAGNPADSERLQPMLERHIAFYGAAPRQAAADGGYASRTNLSQAKAWGIRDMAFHKKCGLKIEDMVKSRWVYRKLRNFRAGIEA
GISCLKRAYGLGRCTWRGLDHFKAYVWSSVVAYNLALFARLRPT
SPKKSVLHKTISAIRAQTFEEINRVLLASARQEKLESGKVLRVDSTVTAALIHEPSDSSLLWDAVRVMVRLLQQADALGSAIPWHDHRRAAKKRSRAIEY
TRGRPKRIKYYRELLKITRTTLSYLQQASEQLPLTAGLAGELWQAQLRRYRPLIERIIAQTERRVLAGEAVPAGEKLVSLFEPHADIIVKGSRDVDYGHK
LNLTTGRSGLILDLVVEAGNPADSERLQPMLERHIAFYGAAPRQAAADGGYASRTNLSQAKAWGIRDMAFHKKCGLKIEDMVKSRWVYRKLRNFRAGIEA
GISCLKRAYGLGRCTWRGLDHFKAYVWSSVVAYNLALFARLRPT
Blast result :
Comments
ISRle10 is 93% aa similar to ISRm17.
References
1] ISfinder annotation (2010).
2] Young,J.P., Crossman,L.C., Johnston,A.W., Thomson,N.R., Ghazoui,Z.F., Hull,K.H., Wexler,M., Curson,A.R., Todd,J.D., Poole,P.S., Mauchline,T.H., East,A.K., Quail,M.A., Churcher,C., Arrowsmith,C., Cherevach,I., Chillingworth,T., Clarke,K., Cronin,A., Davis,P., Fraser,A., Hance,Z., Hauser,H., Jagels,K., Moule,S., Mungall,K., Norbertczak,H., Rabbinowitsch,E., Sanders,M., Simmonds,M., Whitehead,S. and Parkhill,J. (2006) Genome Biol. 7 (4), R34.
3] Crossman,L.C. (2006) Direct submission Genbank.
2] Young,J.P., Crossman,L.C., Johnston,A.W., Thomson,N.R., Ghazoui,Z.F., Hull,K.H., Wexler,M., Curson,A.R., Todd,J.D., Poole,P.S., Mauchline,T.H., East,A.K., Quail,M.A., Churcher,C., Arrowsmith,C., Cherevach,I., Chillingworth,T., Clarke,K., Cronin,A., Davis,P., Fraser,A., Hance,Z., Hauser,H., Jagels,K., Moule,S., Mungall,K., Norbertczak,H., Rabbinowitsch,E., Sanders,M., Simmonds,M., Whitehead,S. and Parkhill,J. (2006) Genome Biol. 7 (4), R34.
3] Crossman,L.C. (2006) Direct submission Genbank.