ISDth2
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ACJN00000000 | ND | Desulfonatronospira thiodismutans | Desulfonatronospira thiodismutans ASO3-1 |
DNA section
IS Length : 1658 bp
Ends
IR Length : 15
IRL : GTTTCCATCCGGAAATATTTAACTACTTGAAATTTTACTTTATTTCGCGA
IRR : GTTTCCATCCGGAAACCCCGGTTGCGCAACAGCTGTGATCTGCTAAAAGT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CCCAGATGGC | TATGCA | GCTCATGGTT | 6 |
DNA sequence
GTTTCCATCCGGAAATATTTAACTACTTGAAATTTTACTTTATTTCGCGATAAATTAATTGACTTTTAATGCACTTTTTGGCATGCTTCCCTTTGTAAGC
AGGCGATTATACTGTAAAAGCCAGAAAGGAGGCATGCAAAAAGTGCGAAAAGTATTTGAAACTCAGCCACAGTTTTTTCACCTGATGCCGAGCAATAAGC
TTGGTAAAATGCTTGAAAAAATATCTGACATATTATTCGAGAATAAACAGGTGCTTAAAAGTATATTCAACGACATAGCTGCGGATAAAAATTATACGGT
TGGCCGCAATGGTCTAAATGCTGACCAGGTACTCAGATGCGCTGTCCTCAAAATGCTTATGAACTTCACCTATGAACGCCTGGAATTCCACCTGTCAGAT
TCTCAGGCAATGAGAGCATTTGCCAAACTGGACTACAATCAAAAACCGGGCAAGTCGTCTTTACAGGCAAACATAAAGTCCATATCTGAAGACACATGGG
AAAAGATCAATAAAGCTCTGGTCAAGTACAGCCTTGATACGAAGATTGAGACAGGAAATATGACCAGAACTGACGCCACTGCTGTGGATACCAATATTCA
TAAGCCTTGCGACTCAACCCTTTTGCAGGATGGCATCAGAGTCATTACCAGAATCCTTCAAAAAACAAAAGAGCTGTGTCCGGGGGTTAAGTTTTCAGAC
CATAATCGAGCTGCCAAAAAGAGAGTCCTGAACATTATGCATGCAAAGGACAAAAAAAGGGAAAAAGCCTACAAGAAACTACTGGGGCTGGCCCGCAATG
TAGTGCAGTACGCTGATCAGGCTCATGCCGAGCTTAAAGCATACAATGACCCGGACTTCGAAAAAAAGCTTCTGGCTGAAAATCTCAAAGAGCAGCTTGA
ATACAACCTGGACATGCTGCACCAGGTCATGGATCAAACCGTACGTCGGGTAATCAATAAGGAAAAGGTTCCTTCTGAAGAAAAGCTGATCTCTTTCTTT
GAGCCCCATAGCGATATCATCAAAAAAGCCAGAAGAGAGACCCAGTTCGGTCACAAGGTATACCTGACAACCGGGAAAAGCGGCCTTATCCTGGATTGTA
TGATGCCCAGAGGCAATCCCAATGACTCCTCCCTTGTGGAGGAGATCGTAGAACGCCAAAAAAAGACCCTTGATAAGACCCCCAGGAAAATAGCCATGGA
CGGGGGCTTTGCCTCCCAAAACAGCTTAGACAAAGCCAAAGAAGCAGGGGTCAAGGATGTCTGCTTTGCCAAAAAACGCAACCTGAACATCCTGGATATG
GTCAAGAGCTCTTATGTATACAAGAAGCTGCGCAACTTCAGGGCCGGCATAGAAGCCATCATCTCCACCATGAAGCGAGCCTTTGGTCTGGACCGCTGCA
CCTGGCAAGGCTGGGAGGGCTTCAAGCAATACGTCTGGTCCAGCGTGGTTGCCTTCAATCTTCAGATAATGGCCACAGCTTAGTGAGGCCTGAGACGGCA
AAGCTAACTCCCAGGGGGTAGTACGTCCAAAAACCAGTTTTTCGACATACTTTTTGAAAAAACGTGCTATCAAGCCCGGACCAAGGGGGTAATCACCCCC
AGCATAAAACTTTTAGCAGATCACAGCTGTTGCGCAACCGGGGTTTCCGGATGGAAAC
AGGCGATTATACTGTAAAAGCCAGAAAGGAGGCATGCAAAAAGTGCGAAAAGTATTTGAAACTCAGCCACAGTTTTTTCACCTGATGCCGAGCAATAAGC
TTGGTAAAATGCTTGAAAAAATATCTGACATATTATTCGAGAATAAACAGGTGCTTAAAAGTATATTCAACGACATAGCTGCGGATAAAAATTATACGGT
TGGCCGCAATGGTCTAAATGCTGACCAGGTACTCAGATGCGCTGTCCTCAAAATGCTTATGAACTTCACCTATGAACGCCTGGAATTCCACCTGTCAGAT
TCTCAGGCAATGAGAGCATTTGCCAAACTGGACTACAATCAAAAACCGGGCAAGTCGTCTTTACAGGCAAACATAAAGTCCATATCTGAAGACACATGGG
AAAAGATCAATAAAGCTCTGGTCAAGTACAGCCTTGATACGAAGATTGAGACAGGAAATATGACCAGAACTGACGCCACTGCTGTGGATACCAATATTCA
TAAGCCTTGCGACTCAACCCTTTTGCAGGATGGCATCAGAGTCATTACCAGAATCCTTCAAAAAACAAAAGAGCTGTGTCCGGGGGTTAAGTTTTCAGAC
CATAATCGAGCTGCCAAAAAGAGAGTCCTGAACATTATGCATGCAAAGGACAAAAAAAGGGAAAAAGCCTACAAGAAACTACTGGGGCTGGCCCGCAATG
TAGTGCAGTACGCTGATCAGGCTCATGCCGAGCTTAAAGCATACAATGACCCGGACTTCGAAAAAAAGCTTCTGGCTGAAAATCTCAAAGAGCAGCTTGA
ATACAACCTGGACATGCTGCACCAGGTCATGGATCAAACCGTACGTCGGGTAATCAATAAGGAAAAGGTTCCTTCTGAAGAAAAGCTGATCTCTTTCTTT
GAGCCCCATAGCGATATCATCAAAAAAGCCAGAAGAGAGACCCAGTTCGGTCACAAGGTATACCTGACAACCGGGAAAAGCGGCCTTATCCTGGATTGTA
TGATGCCCAGAGGCAATCCCAATGACTCCTCCCTTGTGGAGGAGATCGTAGAACGCCAAAAAAAGACCCTTGATAAGACCCCCAGGAAAATAGCCATGGA
CGGGGGCTTTGCCTCCCAAAACAGCTTAGACAAAGCCAAAGAAGCAGGGGTCAAGGATGTCTGCTTTGCCAAAAAACGCAACCTGAACATCCTGGATATG
GTCAAGAGCTCTTATGTATACAAGAAGCTGCGCAACTTCAGGGCCGGCATAGAAGCCATCATCTCCACCATGAAGCGAGCCTTTGGTCTGGACCGCTGCA
CCTGGCAAGGCTGGGAGGGCTTCAAGCAATACGTCTGGTCCAGCGTGGTTGCCTTCAATCTTCAGATAATGGCCACAGCTTAGTGAGGCCTGAGACGGCA
AAGCTAACTCCCAGGGGGTAGTACGTCCAAAAACCAGTTTTTCGACATACTTTTTGAAAAAACGTGCTATCAAGCCCGGACCAAGGGGGTAATCACCCCC
AGCATAAAACTTTTAGCAGATCACAGCTGTTGCGCAACCGGGGTTTCCGGATGGAAAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1341 bp | 446 aa | 143 | 1483 | + | No |
Chemistry : DDE
ORF sequence :
MRKVFETQPQFFHLMPSNKLGKMLEKISDILFENKQVLKSIFNDIAADKNYTVGRNGLNADQVLRCAVLKMLMNFTYERLEFHLSDSQAMRAFAKLDYNQ
KPGKSSLQANIKSISEDTWEKINKALVKYSLDTKIETGNMTRTDATAVDTNIHKPCDSTLLQDGIRVITRILQKTKELCPGVKFSDHNRAAKKRVLNIMH
AKDKKREKAYKKLLGLARNVVQYADQAHAELKAYNDPDFEKKLLAENLKEQLEYNLDMLHQVMDQTVRRVINKEKVPSEEKLISFFEPHSDIIKKARRET
QFGHKVYLTTGKSGLILDCMMPRGNPNDSSLVEEIVERQKKTLDKTPRKIAMDGGFASQNSLDKAKEAGVKDVCFAKKRNLNILDMVKSSYVYKKLRNFR
AGIEAIISTMKRAFGLDRCTWQGWEGFKQYVWSSVVAFNLQIMATA
KPGKSSLQANIKSISEDTWEKINKALVKYSLDTKIETGNMTRTDATAVDTNIHKPCDSTLLQDGIRVITRILQKTKELCPGVKFSDHNRAAKKRVLNIMH
AKDKKREKAYKKLLGLARNVVQYADQAHAELKAYNDPDFEKKLLAENLKEQLEYNLDMLHQVMDQTVRRVINKEKVPSEEKLISFFEPHSDIIKKARRET
QFGHKVYLTTGKSGLILDCMMPRGNPNDSSLVEEIVERQKKTLDKTPRKIAMDGGFASQNSLDKAKEAGVKDVCFAKKRNLNILDMVKSSYVYKKLRNFR
AGIEAIISTMKRAFGLDRCTWQGWEGFKQYVWSSVVAFNLQIMATA
Blast result :
Comments
ISDth2 is 62% aa similar to ISRm17 and ISDol1.
References
1] ISfinder annotation (2010).
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L. and Muyzer,G. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L. and Muyzer,G. (2009) Direct submission GenBank.