ISCte5

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAUJ02000001 ND Comamonas testosteroni
Comamonas testosteroni KF-1
DNA section
IS Length : 1321 bp

Ends


IR Length : 15

IRL : CAGGCCGTTGAAAAATCCCCTGCGAGCGTCCGCGTCGGCCGCTACGATCT
IRR : CAGGCCGTTGAAAAAATGCTCATCGAACGCGCCAGGGTCGTGGATTTCGA

Insertion site


Left flankDirect repeatRight flankDR Length
TTTTTTATGACACAGTAAGATTAACTAGATGCCCGCAGGGCCGGTGTCCGTCTA0
ATCCGTGAGCTTCGAACGTCTTAATTAGCGCGTGCCGCTACTTTGTCTTGTCCC0

DNA sequence

CAGGCCGTTGAAAAATCCCCTGCGAGCGTCCGCGTCGGCCGCTACGATCTGAAGCCATCCCGCAACAACTGCGACAAGAAAGATGAGAGGCAACCAAGAC
TTCCAGGGGGCGATGTTCAGCTACATCAGCCTTGAAGAAAGAGTGCCAGCGGCACACCCGCTGCGCAAGTTGCGCGCCGTGGTGGATGCGCTGCTGGCGA
GCATGAACAGCGAGTTCGAAGCGGTGTACGCCCGCCGTGGCCGACCGTCGGTGCCGCCGGAGATGCTGCTCAAGGCCTTGCTGCTGCAAATCCTGTTCTC
CATCCGCAGCGAACGCCAGCTGGTCGAGGCGGTCAACTACAACCTGCTGTACCGCTGGTTCGTCGGCCTGAACATCGAGGACAAAGTTTGGGACCACTCC
ACCTTCAGCGCCAACCGCGAACGCCTCTTCAACGAAGACCTGGCGCGCGCCTTCTTCGAGCGCGTCAAGCTCAGCGCCCAGTGGGGCCGGCTTGCCAGCG
ACGAACACTTCAGCGTGGACGGCACGCTGATTGAGGCCTGGGCCTCGCACAAGAGTTTCAAACGCAAAGACGACGACAGCGGCACGCCACCCGGACGCAA
CCCCGAGGTGAACTTCAAAGGGCAGGAGCGCTGCAACGGCACCCATGCCAGCACCACCGATGCCGATGCCCGGCTGTTCAAGAAGAGCGCGGGCGACAAG
TCCCGCCTGTGCCACATGGGGCACATCCTCATGGAGAACCGCAACGGTCTGATCGTGGATGTGGAGATCACACATGCCAGTGGCACCGCCGAGCGCGAGG
CGGCGCTGGCGATGCTCAAACGCCGGGGCAACAGGAACAAGCGGGCCACGGTCGGCGCCGACAAGGGCTACGACAGCAAGGCCTTCATCAAGGGCTGTCG
CCGGCTCTTGGTCACGCCGCACGTGGCGGCCAAGGACAAGCACTCTGCAGTCGATGGGCGCATCAAGCGCCACGAGGGCTACAAAACCAGCCTCAAAGTG
CGCAAGCGAATCGAGGAGGCCTTTGGCTGGATCAAGACAGTGGGCGGTCTGGCCAAGACCAAATTGATCGGTCAGGCCAAGCTCGCGGGCCAGGCGCTGC
TGTGCTTTGCCACCTACAACCTGGTGCGCATGGGCAGTCTGGGCGGTTGGTGGGACGCGCATCATGCGTGAACCATGGGATACGTGCGCCCGGAACGGGC
AAAACGGCCTGCAAACAGGCCGAAATGGCCGCTCCAATCGCTGCGCAGGCCAGTTTGCGCGATCCGTTTCTTCGAAATCCACGACCCTGGCGCGTTCGAT
GAGCATTTTTTCAACGGCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1089 bp362 aa831171+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGNQDFQGAMFSYISLEERVPAAHPLRKLRAVVDALLASMNSEFEAVYARRGRPSVPPEMLLKALLLQILFSIRSERQLVEAVNYNLLYRWFVGLNIED
KVWDHSTFSANRERLFNEDLARAFFERVKLSAQWGRLASDEHFSVDGTLIEAWASHKSFKRKDDDSGTPPGRNPEVNFKGQERCNGTHASTTDADARLFK
KSAGDKSRLCHMGHILMENRNGLIVDVEITHASGTAEREAALAMLKRRGNRNKRATVGADKGYDSKAFIKGCRRLLVTPHVAAKDKHSAVDGRIKRHEGY
KTSLKVRKRIEEAFGWIKTVGGLAKTKLIGQAKLAGQALLCFATYNLVRMGSLGGWWDAHHA

 

Blast result :
Comments
ISCte5 is 97% aa similar to ISAav3.
References
1] ISfinder annotation (2010)
2] Schleheck,D., Knepper,T.P., Fischer,K. and Cook,A.M. (2004) Appl. Environ. Microbiol. 70 (7), 4053-4063.