ISCte5
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAUJ02000001 | ND | Comamonas testosteroni | Comamonas testosteroni KF-1 |
DNA section
IS Length : 1321 bp
Ends
IR Length : 15
IRL : CAGGCCGTTGAAAAATCCCCTGCGAGCGTCCGCGTCGGCCGCTACGATCT
IRR : CAGGCCGTTGAAAAAATGCTCATCGAACGCGCCAGGGTCGTGGATTTCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTTTTATGACACAGTAAGATTAA | CTAGATGCCCGCAGGGCCGGTGTCCGTCTA | 0 | |
ATCCGTGAGCTTCGAACGTCTTAA | TTAGCGCGTGCCGCTACTTTGTCTTGTCCC | 0 |
DNA sequence
CAGGCCGTTGAAAAATCCCCTGCGAGCGTCCGCGTCGGCCGCTACGATCTGAAGCCATCCCGCAACAACTGCGACAAGAAAGATGAGAGGCAACCAAGAC
TTCCAGGGGGCGATGTTCAGCTACATCAGCCTTGAAGAAAGAGTGCCAGCGGCACACCCGCTGCGCAAGTTGCGCGCCGTGGTGGATGCGCTGCTGGCGA
GCATGAACAGCGAGTTCGAAGCGGTGTACGCCCGCCGTGGCCGACCGTCGGTGCCGCCGGAGATGCTGCTCAAGGCCTTGCTGCTGCAAATCCTGTTCTC
CATCCGCAGCGAACGCCAGCTGGTCGAGGCGGTCAACTACAACCTGCTGTACCGCTGGTTCGTCGGCCTGAACATCGAGGACAAAGTTTGGGACCACTCC
ACCTTCAGCGCCAACCGCGAACGCCTCTTCAACGAAGACCTGGCGCGCGCCTTCTTCGAGCGCGTCAAGCTCAGCGCCCAGTGGGGCCGGCTTGCCAGCG
ACGAACACTTCAGCGTGGACGGCACGCTGATTGAGGCCTGGGCCTCGCACAAGAGTTTCAAACGCAAAGACGACGACAGCGGCACGCCACCCGGACGCAA
CCCCGAGGTGAACTTCAAAGGGCAGGAGCGCTGCAACGGCACCCATGCCAGCACCACCGATGCCGATGCCCGGCTGTTCAAGAAGAGCGCGGGCGACAAG
TCCCGCCTGTGCCACATGGGGCACATCCTCATGGAGAACCGCAACGGTCTGATCGTGGATGTGGAGATCACACATGCCAGTGGCACCGCCGAGCGCGAGG
CGGCGCTGGCGATGCTCAAACGCCGGGGCAACAGGAACAAGCGGGCCACGGTCGGCGCCGACAAGGGCTACGACAGCAAGGCCTTCATCAAGGGCTGTCG
CCGGCTCTTGGTCACGCCGCACGTGGCGGCCAAGGACAAGCACTCTGCAGTCGATGGGCGCATCAAGCGCCACGAGGGCTACAAAACCAGCCTCAAAGTG
CGCAAGCGAATCGAGGAGGCCTTTGGCTGGATCAAGACAGTGGGCGGTCTGGCCAAGACCAAATTGATCGGTCAGGCCAAGCTCGCGGGCCAGGCGCTGC
TGTGCTTTGCCACCTACAACCTGGTGCGCATGGGCAGTCTGGGCGGTTGGTGGGACGCGCATCATGCGTGAACCATGGGATACGTGCGCCCGGAACGGGC
AAAACGGCCTGCAAACAGGCCGAAATGGCCGCTCCAATCGCTGCGCAGGCCAGTTTGCGCGATCCGTTTCTTCGAAATCCACGACCCTGGCGCGTTCGAT
GAGCATTTTTTCAACGGCCTG
TTCCAGGGGGCGATGTTCAGCTACATCAGCCTTGAAGAAAGAGTGCCAGCGGCACACCCGCTGCGCAAGTTGCGCGCCGTGGTGGATGCGCTGCTGGCGA
GCATGAACAGCGAGTTCGAAGCGGTGTACGCCCGCCGTGGCCGACCGTCGGTGCCGCCGGAGATGCTGCTCAAGGCCTTGCTGCTGCAAATCCTGTTCTC
CATCCGCAGCGAACGCCAGCTGGTCGAGGCGGTCAACTACAACCTGCTGTACCGCTGGTTCGTCGGCCTGAACATCGAGGACAAAGTTTGGGACCACTCC
ACCTTCAGCGCCAACCGCGAACGCCTCTTCAACGAAGACCTGGCGCGCGCCTTCTTCGAGCGCGTCAAGCTCAGCGCCCAGTGGGGCCGGCTTGCCAGCG
ACGAACACTTCAGCGTGGACGGCACGCTGATTGAGGCCTGGGCCTCGCACAAGAGTTTCAAACGCAAAGACGACGACAGCGGCACGCCACCCGGACGCAA
CCCCGAGGTGAACTTCAAAGGGCAGGAGCGCTGCAACGGCACCCATGCCAGCACCACCGATGCCGATGCCCGGCTGTTCAAGAAGAGCGCGGGCGACAAG
TCCCGCCTGTGCCACATGGGGCACATCCTCATGGAGAACCGCAACGGTCTGATCGTGGATGTGGAGATCACACATGCCAGTGGCACCGCCGAGCGCGAGG
CGGCGCTGGCGATGCTCAAACGCCGGGGCAACAGGAACAAGCGGGCCACGGTCGGCGCCGACAAGGGCTACGACAGCAAGGCCTTCATCAAGGGCTGTCG
CCGGCTCTTGGTCACGCCGCACGTGGCGGCCAAGGACAAGCACTCTGCAGTCGATGGGCGCATCAAGCGCCACGAGGGCTACAAAACCAGCCTCAAAGTG
CGCAAGCGAATCGAGGAGGCCTTTGGCTGGATCAAGACAGTGGGCGGTCTGGCCAAGACCAAATTGATCGGTCAGGCCAAGCTCGCGGGCCAGGCGCTGC
TGTGCTTTGCCACCTACAACCTGGTGCGCATGGGCAGTCTGGGCGGTTGGTGGGACGCGCATCATGCGTGAACCATGGGATACGTGCGCCCGGAACGGGC
AAAACGGCCTGCAAACAGGCCGAAATGGCCGCTCCAATCGCTGCGCAGGCCAGTTTGCGCGATCCGTTTCTTCGAAATCCACGACCCTGGCGCGTTCGAT
GAGCATTTTTTCAACGGCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1089 bp | 362 aa | 83 | 1171 | + | No |
Chemistry : DDE
ORF sequence :
MRGNQDFQGAMFSYISLEERVPAAHPLRKLRAVVDALLASMNSEFEAVYARRGRPSVPPEMLLKALLLQILFSIRSERQLVEAVNYNLLYRWFVGLNIED
KVWDHSTFSANRERLFNEDLARAFFERVKLSAQWGRLASDEHFSVDGTLIEAWASHKSFKRKDDDSGTPPGRNPEVNFKGQERCNGTHASTTDADARLFK
KSAGDKSRLCHMGHILMENRNGLIVDVEITHASGTAEREAALAMLKRRGNRNKRATVGADKGYDSKAFIKGCRRLLVTPHVAAKDKHSAVDGRIKRHEGY
KTSLKVRKRIEEAFGWIKTVGGLAKTKLIGQAKLAGQALLCFATYNLVRMGSLGGWWDAHHA
KVWDHSTFSANRERLFNEDLARAFFERVKLSAQWGRLASDEHFSVDGTLIEAWASHKSFKRKDDDSGTPPGRNPEVNFKGQERCNGTHASTTDADARLFK
KSAGDKSRLCHMGHILMENRNGLIVDVEITHASGTAEREAALAMLKRRGNRNKRATVGADKGYDSKAFIKGCRRLLVTPHVAAKDKHSAVDGRIKRHEGY
KTSLKVRKRIEEAFGWIKTVGGLAKTKLIGQAKLAGQALLCFATYNLVRMGSLGGWWDAHHA
Blast result :
Comments
ISCte5 is 97% aa similar to ISAav3.
References
1] ISfinder annotation (2010)
2] Schleheck,D., Knepper,T.P., Fischer,K. and Cook,A.M. (2004) Appl. Environ. Microbiol. 70 (7), 4053-4063.
2] Schleheck,D., Knepper,T.P., Fischer,K. and Cook,A.M. (2004) Appl. Environ. Microbiol. 70 (7), 4053-4063.