ISDisp1
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011992 | ND | Diaphorobacter sp. | Acidovorax sp. JS42 Diaphorobacter sp. TPSY |
DNA section
IS Length : 1321 bp
Ends
IR Length : 15
IRL : CAGGCCGTTGAAAAATCCCCCTCCGACGCCCGCGTTCGCCGCTACGATCT
IRR : CAGGCCGTTGAAAAAGTGCTTTTCGAACGCATCAGGGACGCTGAGTTCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTTGTTCATCGGTGCT | TTAA | GCACCGCGCGCCGTC | 4 |
ATCAGTAAAAATGGCT | CTAG | CGCTTATCTGGTAAG | 4 |
GGACTGCCATCGTTCC | TTAA | GACCAGCGGCGGCAA | 4 |
CTTTCGGGTCGCAGCA | CTAG | AACACCCCCAGCGCG | 4 |
DNA sequence
CAGGCCGTTGAAAAATCCCCCTCCGACGCCCGCGTTCGCCGCTACGATCTGAAGCCATAGGTGAACGACCCAGACGAGGACGATGAGAGGCAACCAAGAC
TTCCAGGGGGCGATGTTCAGCTACATCAGCCTTGAAGAGCGCGTGCCGCAGGCACACCCGCTGCGCAAGTTGCGCGCGGTGGTTGATGCGCTGCTGGCAA
CCATGAACCGCGAATTCGAAGCGGTGTACGCCCGCCGTGGCCGCCCATCGGTGCCACCGGAGATGCTGCTCAAGGCCTTGCTGCTGCAGATCCTGTTCTC
CATCCGCAGCGAGCGCCAGTTGGTCGAAGCGATCAACTACAACCTGCTGTACCGCTGGTTCGTAGGCCTGAACATCGAAGACAAGGTCTGGGACCACTCC
ACTTTCAGCGCCAACCGCGAACGTCTGTTCAACGAAGACCTCGCCCGCACCTTCTTCGAGCGCGTCAAGCTCAGTGCCCAGTGGGGCAAGCTCGCCAGCG
ACGAGCACTTCAGCGTGGACGGCACGCTCATTGACGCCTGGGCCTCGCACAAGAGCTTCAAGCGCAAAGATGACGACAGCGGCACGCCGCCTGGGCGCAA
CCCCGAGGTGGACTTCAAGGGGCAGGAGCGCTGCAACGACACCCACAAGAGCACCACGGACGCCGATGCCCGGCTGTTCAAGAAGAGCCGGGGCGACAAA
TCCCGCCTGTGCCACATGGGACACATCCTCATGGAGAACCGCAACGGGCTGATCGTGGATGTCGAGATCACCCATGCCAGCGGCACGGCCGAGCGCGAGG
CGGCACTGGCCATGTTGGAGCGTCGGGGCAACAGGAACAAACGGGCCACGGTCGGTGCCGACAAGGGCTACGACAGCAAGGCCTTCATCAAAGGCTGTCG
CAAGCTCAAAGTCACGCCCCACGTGGCGGCCAAGGACAAACACTCGGCGGTGGATGCGCGAGTGACACGGCACGAGGGCTACAAGACCAGCCTGAAGGTG
CGCAAGCGCATCGAAGAGGCCTTTGGCTGGATCAAGACCGTCGGTGGTCTGGCAAAGACCAAGCTGATCGGTCAGGCCAAGCTCACGGGCCAGGCGCTGC
TGTGCTTTGCCACCTACAACCTTGTGCGAATGGGCAGCATCGGCGGCTGGTGGAACGCGCATCATGCGTGAGCCCAGGGATACGTGCGCCCGAAATGGGC
GGGAGGGCCTGCAAACCGGCCAGATTGGCCGTTGCAATCGCTGCGCAGACGCGTCTGGGCAGCTCATGTCTTCGAACTCAGCGTCCCTGATGCGTTCGAA
AAGCACTTTTTCAACGGCCTG
TTCCAGGGGGCGATGTTCAGCTACATCAGCCTTGAAGAGCGCGTGCCGCAGGCACACCCGCTGCGCAAGTTGCGCGCGGTGGTTGATGCGCTGCTGGCAA
CCATGAACCGCGAATTCGAAGCGGTGTACGCCCGCCGTGGCCGCCCATCGGTGCCACCGGAGATGCTGCTCAAGGCCTTGCTGCTGCAGATCCTGTTCTC
CATCCGCAGCGAGCGCCAGTTGGTCGAAGCGATCAACTACAACCTGCTGTACCGCTGGTTCGTAGGCCTGAACATCGAAGACAAGGTCTGGGACCACTCC
ACTTTCAGCGCCAACCGCGAACGTCTGTTCAACGAAGACCTCGCCCGCACCTTCTTCGAGCGCGTCAAGCTCAGTGCCCAGTGGGGCAAGCTCGCCAGCG
ACGAGCACTTCAGCGTGGACGGCACGCTCATTGACGCCTGGGCCTCGCACAAGAGCTTCAAGCGCAAAGATGACGACAGCGGCACGCCGCCTGGGCGCAA
CCCCGAGGTGGACTTCAAGGGGCAGGAGCGCTGCAACGACACCCACAAGAGCACCACGGACGCCGATGCCCGGCTGTTCAAGAAGAGCCGGGGCGACAAA
TCCCGCCTGTGCCACATGGGACACATCCTCATGGAGAACCGCAACGGGCTGATCGTGGATGTCGAGATCACCCATGCCAGCGGCACGGCCGAGCGCGAGG
CGGCACTGGCCATGTTGGAGCGTCGGGGCAACAGGAACAAACGGGCCACGGTCGGTGCCGACAAGGGCTACGACAGCAAGGCCTTCATCAAAGGCTGTCG
CAAGCTCAAAGTCACGCCCCACGTGGCGGCCAAGGACAAACACTCGGCGGTGGATGCGCGAGTGACACGGCACGAGGGCTACAAGACCAGCCTGAAGGTG
CGCAAGCGCATCGAAGAGGCCTTTGGCTGGATCAAGACCGTCGGTGGTCTGGCAAAGACCAAGCTGATCGGTCAGGCCAAGCTCACGGGCCAGGCGCTGC
TGTGCTTTGCCACCTACAACCTTGTGCGAATGGGCAGCATCGGCGGCTGGTGGAACGCGCATCATGCGTGAGCCCAGGGATACGTGCGCCCGAAATGGGC
GGGAGGGCCTGCAAACCGGCCAGATTGGCCGTTGCAATCGCTGCGCAGACGCGTCTGGGCAGCTCATGTCTTCGAACTCAGCGTCCCTGATGCGTTCGAA
AAGCACTTTTTCAACGGCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1089 bp | 362 aa | 83 | 1171 | + | No |
Chemistry : DDE
ORF sequence :
MRGNQDFQGAMFSYISLEERVPQAHPLRKLRAVVDALLATMNREFEAVYARRGRPSVPPEMLLKALLLQILFSIRSERQLVEAINYNLLYRWFVGLNIED
KVWDHSTFSANRERLFNEDLARTFFERVKLSAQWGKLASDEHFSVDGTLIDAWASHKSFKRKDDDSGTPPGRNPEVDFKGQERCNDTHKSTTDADARLFK
KSRGDKSRLCHMGHILMENRNGLIVDVEITHASGTAEREAALAMLERRGNRNKRATVGADKGYDSKAFIKGCRKLKVTPHVAAKDKHSAVDARVTRHEGY
KTSLKVRKRIEEAFGWIKTVGGLAKTKLIGQAKLTGQALLCFATYNLVRMGSIGGWWNAHHA
KVWDHSTFSANRERLFNEDLARTFFERVKLSAQWGKLASDEHFSVDGTLIDAWASHKSFKRKDDDSGTPPGRNPEVDFKGQERCNDTHKSTTDADARLFK
KSRGDKSRLCHMGHILMENRNGLIVDVEITHASGTAEREAALAMLERRGNRNKRATVGADKGYDSKAFIKGCRKLKVTPHVAAKDKHSAVDARVTRHEGY
KTSLKVRKRIEEAFGWIKTVGGLAKTKLIGQAKLTGQALLCFATYNLVRMGSIGGWWNAHHA
Blast result :
Comments
ISDisp1 is 97% aa similar to ISAav3.
References
1] ISfinder annotation (2010)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N. and Coates,J.D. (2009) Direct submission Genbank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N. and Coates,J.D. (2009) Direct submission Genbank.