ISDisp1

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011992 ND Diaphorobacter sp.
Acidovorax sp. JS42
Diaphorobacter sp. TPSY
DNA section
IS Length : 1321 bp

Ends


IR Length : 15

IRL : CAGGCCGTTGAAAAATCCCCCTCCGACGCCCGCGTTCGCCGCTACGATCT
IRR : CAGGCCGTTGAAAAAGTGCTTTTCGAACGCATCAGGGACGCTGAGTTCGA

Insertion site


Left flankDirect repeatRight flankDR Length
CTTGTTCATCGGTGCTTTAAGCACCGCGCGCCGTC4
ATCAGTAAAAATGGCTCTAGCGCTTATCTGGTAAG4
GGACTGCCATCGTTCCTTAAGACCAGCGGCGGCAA4
CTTTCGGGTCGCAGCACTAGAACACCCCCAGCGCG4

DNA sequence

CAGGCCGTTGAAAAATCCCCCTCCGACGCCCGCGTTCGCCGCTACGATCTGAAGCCATAGGTGAACGACCCAGACGAGGACGATGAGAGGCAACCAAGAC
TTCCAGGGGGCGATGTTCAGCTACATCAGCCTTGAAGAGCGCGTGCCGCAGGCACACCCGCTGCGCAAGTTGCGCGCGGTGGTTGATGCGCTGCTGGCAA
CCATGAACCGCGAATTCGAAGCGGTGTACGCCCGCCGTGGCCGCCCATCGGTGCCACCGGAGATGCTGCTCAAGGCCTTGCTGCTGCAGATCCTGTTCTC
CATCCGCAGCGAGCGCCAGTTGGTCGAAGCGATCAACTACAACCTGCTGTACCGCTGGTTCGTAGGCCTGAACATCGAAGACAAGGTCTGGGACCACTCC
ACTTTCAGCGCCAACCGCGAACGTCTGTTCAACGAAGACCTCGCCCGCACCTTCTTCGAGCGCGTCAAGCTCAGTGCCCAGTGGGGCAAGCTCGCCAGCG
ACGAGCACTTCAGCGTGGACGGCACGCTCATTGACGCCTGGGCCTCGCACAAGAGCTTCAAGCGCAAAGATGACGACAGCGGCACGCCGCCTGGGCGCAA
CCCCGAGGTGGACTTCAAGGGGCAGGAGCGCTGCAACGACACCCACAAGAGCACCACGGACGCCGATGCCCGGCTGTTCAAGAAGAGCCGGGGCGACAAA
TCCCGCCTGTGCCACATGGGACACATCCTCATGGAGAACCGCAACGGGCTGATCGTGGATGTCGAGATCACCCATGCCAGCGGCACGGCCGAGCGCGAGG
CGGCACTGGCCATGTTGGAGCGTCGGGGCAACAGGAACAAACGGGCCACGGTCGGTGCCGACAAGGGCTACGACAGCAAGGCCTTCATCAAAGGCTGTCG
CAAGCTCAAAGTCACGCCCCACGTGGCGGCCAAGGACAAACACTCGGCGGTGGATGCGCGAGTGACACGGCACGAGGGCTACAAGACCAGCCTGAAGGTG
CGCAAGCGCATCGAAGAGGCCTTTGGCTGGATCAAGACCGTCGGTGGTCTGGCAAAGACCAAGCTGATCGGTCAGGCCAAGCTCACGGGCCAGGCGCTGC
TGTGCTTTGCCACCTACAACCTTGTGCGAATGGGCAGCATCGGCGGCTGGTGGAACGCGCATCATGCGTGAGCCCAGGGATACGTGCGCCCGAAATGGGC
GGGAGGGCCTGCAAACCGGCCAGATTGGCCGTTGCAATCGCTGCGCAGACGCGTCTGGGCAGCTCATGTCTTCGAACTCAGCGTCCCTGATGCGTTCGAA
AAGCACTTTTTCAACGGCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1089 bp362 aa831171+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGNQDFQGAMFSYISLEERVPQAHPLRKLRAVVDALLATMNREFEAVYARRGRPSVPPEMLLKALLLQILFSIRSERQLVEAINYNLLYRWFVGLNIED
KVWDHSTFSANRERLFNEDLARTFFERVKLSAQWGKLASDEHFSVDGTLIDAWASHKSFKRKDDDSGTPPGRNPEVDFKGQERCNDTHKSTTDADARLFK
KSRGDKSRLCHMGHILMENRNGLIVDVEITHASGTAEREAALAMLERRGNRNKRATVGADKGYDSKAFIKGCRKLKVTPHVAAKDKHSAVDARVTRHEGY
KTSLKVRKRIEEAFGWIKTVGGLAKTKLIGQAKLTGQALLCFATYNLVRMGSIGGWWNAHHA

 

Blast result :
Comments
ISDisp1 is 97% aa similar to ISAav3.
References
1] ISfinder annotation (2010)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N. and Coates,J.D. (2009) Direct submission Genbank.