ISRin1
- Family IS5
- Group IS5
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABYJ02000058 | ND | Roseburia intestinalis | Roseburia intestinalis L1-82 |
DNA section
IS Length : 1655 bp
Ends
IR Length : 15/19
IRL : GCGCCTGCTCATTAACTAAAAAACACAGATAAATAGTGGATTTTATATAG
IRR : GTGTCTGCTCATTAAGCAACTTATTTTTTCGGTTCCATACGACAACTTTA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTAATTGTAG | TAAATA | AACCGGCAAA | 6 |
DNA sequence
GCGCCTGCTCATTAACTAAAAAACACAGATAAATAGTGGATTTTATATAGGGTTTGCGCTATAATAAATGCATATGTAAATTAGCATTCAGACAAAAAAC
TTTGCATTTTGGAGGCACAAAGCTCATGTATATTCCTGAAAAACGTAAAAATCGTCAAATTACACTGTTCGACTTCAACCAGTCATGTGGCATGGAGCTC
GATCCTATTAATGAGTGGATCAAGCTGGCTCATGCCATTCCATGGAGCAAAATGGAAGCAAAATATGTGGCAATGTTCCCTTCCAAGACAGGTCGTCCGG
CGACTCCGTTTAGAATGGCTCTTGGTGTATTGATCATTCAGAAGCGCAAGAAACTTTCTGACAGAGATGTCATAAAAGAGATTCAGGAAAACCCATATCT
GCAGTACTTCCTTGGAATGGAGAAATTCAGTCATCAAGCACCAATAAAGCCTTCTGTCATTGTCAGTTTTCGCAAGCGTCTGACTGCTGACTACCTGATG
GAAGTAAACGAGTACATCCTTGAAATCAGTGGCGTTACAAAAGAGCATGAACCCAAGAACGAAAGCAAAAATGCAAAGGCTGCCAATACACGCTCAGATG
ACATTGAAAATCTTGGGACAGCGATTCTTGATGCCACCTGCTCTCCATCCAACATAAGATATCCACAAGATTTTTCTCTTCTCAATGAAGCACGTGAGAA
GCTTGAGGATATGATTGACTATTTTCACAAGAACTATCATCCATGGGATAAGCCCCGCACCTACCGCAGGATAGCCAGAAAAGAGTATCTTGCACTTGCA
AAGTCCAAAAAGCGTACAGAAAAGAAAATACGTGCAACAATCAGGAAGCAGCTTGGCTATGTCAAGCGTGATTTAGAGTACCTGGAAGACTATATGGAAG
CGGGCTATGCGCTGCCTTCAAAGCACATAGACTACTACCTTACCATCCAGAAGCTCTACGAACAGCAGAAATACATGTATGAGAATAAAACCCATAGTGT
GGAGGATCGTATTGTCAGCATCAGCCAGCCCTATCTGCGTCCGATTGTCCGGGGAAAAGCCAAGTCACCAGTGGAATTTGGCGCAAAATATGATGTCAGC
ATAGATGAAAAAGGACATGCAAGACTGGAAAAGCTGTCCTTTGATGCATACAATGAGAATACCATTTTTGTAGATGCCATGAACCGTTATAAGGAGCGTA
CAGGGCATTATCCCAAACGTGTTCTGGTAGATCAGATCTATAGAACACGCGACAACCGTAATTTCTGCAAAGACCATAACATTACAATGTCTGGTCCGAA
GCTTGGACGTCCTTCAAAGGATAAGAAAAGTACCAAAGAGGAATACCAGGATAACACTGACAGAATAGAAGTTGAAAGATTTTTCAGCACTGAAAAACGC
TGCAATGGAGCAGGTCTTATCATGACAAAACTTGAGGAGACCACGCTGTCCTCTATTGCAATGTCAGTACTGGTAACGAATCTCTTTGCTGTAGATCTTA
CCGGTATTTTTTTGCTCTTTTTTTCAGACAACATATCAAGCGAAAAAACAGAGCATTATATCATTATAGATGATGTTGTTTAAGCTCATTGGAACATGCT
TCAGTTAAAGTTGTCGTATGGAACCGAAAAAATAAGTTGCTTAATGAGCAGACAC
TTTGCATTTTGGAGGCACAAAGCTCATGTATATTCCTGAAAAACGTAAAAATCGTCAAATTACACTGTTCGACTTCAACCAGTCATGTGGCATGGAGCTC
GATCCTATTAATGAGTGGATCAAGCTGGCTCATGCCATTCCATGGAGCAAAATGGAAGCAAAATATGTGGCAATGTTCCCTTCCAAGACAGGTCGTCCGG
CGACTCCGTTTAGAATGGCTCTTGGTGTATTGATCATTCAGAAGCGCAAGAAACTTTCTGACAGAGATGTCATAAAAGAGATTCAGGAAAACCCATATCT
GCAGTACTTCCTTGGAATGGAGAAATTCAGTCATCAAGCACCAATAAAGCCTTCTGTCATTGTCAGTTTTCGCAAGCGTCTGACTGCTGACTACCTGATG
GAAGTAAACGAGTACATCCTTGAAATCAGTGGCGTTACAAAAGAGCATGAACCCAAGAACGAAAGCAAAAATGCAAAGGCTGCCAATACACGCTCAGATG
ACATTGAAAATCTTGGGACAGCGATTCTTGATGCCACCTGCTCTCCATCCAACATAAGATATCCACAAGATTTTTCTCTTCTCAATGAAGCACGTGAGAA
GCTTGAGGATATGATTGACTATTTTCACAAGAACTATCATCCATGGGATAAGCCCCGCACCTACCGCAGGATAGCCAGAAAAGAGTATCTTGCACTTGCA
AAGTCCAAAAAGCGTACAGAAAAGAAAATACGTGCAACAATCAGGAAGCAGCTTGGCTATGTCAAGCGTGATTTAGAGTACCTGGAAGACTATATGGAAG
CGGGCTATGCGCTGCCTTCAAAGCACATAGACTACTACCTTACCATCCAGAAGCTCTACGAACAGCAGAAATACATGTATGAGAATAAAACCCATAGTGT
GGAGGATCGTATTGTCAGCATCAGCCAGCCCTATCTGCGTCCGATTGTCCGGGGAAAAGCCAAGTCACCAGTGGAATTTGGCGCAAAATATGATGTCAGC
ATAGATGAAAAAGGACATGCAAGACTGGAAAAGCTGTCCTTTGATGCATACAATGAGAATACCATTTTTGTAGATGCCATGAACCGTTATAAGGAGCGTA
CAGGGCATTATCCCAAACGTGTTCTGGTAGATCAGATCTATAGAACACGCGACAACCGTAATTTCTGCAAAGACCATAACATTACAATGTCTGGTCCGAA
GCTTGGACGTCCTTCAAAGGATAAGAAAAGTACCAAAGAGGAATACCAGGATAACACTGACAGAATAGAAGTTGAAAGATTTTTCAGCACTGAAAAACGC
TGCAATGGAGCAGGTCTTATCATGACAAAACTTGAGGAGACCACGCTGTCCTCTATTGCAATGTCAGTACTGGTAACGAATCTCTTTGCTGTAGATCTTA
CCGGTATTTTTTTGCTCTTTTTTTCAGACAACATATCAAGCGAAAAAACAGAGCATTATATCATTATAGATGATGTTGTTTAAGCTCATTGGAACATGCT
TCAGTTAAAGTTGTCGTATGGAACCGAAAAAATAAGTTGCTTAATGAGCAGACAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1458 bp | 485 aa | 126 | 1583 | + | No |
Chemistry : DDE
ORF sequence :
MYIPEKRKNRQITLFDFNQSCGMELDPINEWIKLAHAIPWSKMEAKYVAMFPSKTGRPATPFRMALGVLIIQKRKKLSDRDVIKEIQENPYLQYFLGMEK
FSHQAPIKPSVIVSFRKRLTADYLMEVNEYILEISGVTKEHEPKNESKNAKAANTRSDDIENLGTAILDATCSPSNIRYPQDFSLLNEAREKLEDMIDYF
HKNYHPWDKPRTYRRIARKEYLALAKSKKRTEKKIRATIRKQLGYVKRDLEYLEDYMEAGYALPSKHIDYYLTIQKLYEQQKYMYENKTHSVEDRIVSIS
QPYLRPIVRGKAKSPVEFGAKYDVSIDEKGHARLEKLSFDAYNENTIFVDAMNRYKERTGHYPKRVLVDQIYRTRDNRNFCKDHNITMSGPKLGRPSKDK
KSTKEEYQDNTDRIEVERFFSTEKRCNGAGLIMTKLEETTLSSIAMSVLVTNLFAVDLTGIFLLFFSDNISSEKTEHYIIIDDVV
FSHQAPIKPSVIVSFRKRLTADYLMEVNEYILEISGVTKEHEPKNESKNAKAANTRSDDIENLGTAILDATCSPSNIRYPQDFSLLNEAREKLEDMIDYF
HKNYHPWDKPRTYRRIARKEYLALAKSKKRTEKKIRATIRKQLGYVKRDLEYLEDYMEAGYALPSKHIDYYLTIQKLYEQQKYMYENKTHSVEDRIVSIS
QPYLRPIVRGKAKSPVEFGAKYDVSIDEKGHARLEKLSFDAYNENTIFVDAMNRYKERTGHYPKRVLVDQIYRTRDNRNFCKDHNITMSGPKLGRPSKDK
KSTKEEYQDNTDRIEVERFFSTEKRCNGAGLIMTKLEETTLSSIAMSVLVTNLFAVDLTGIFLLFFSDNISSEKTEHYIIIDDVV
Blast result :
Comments
ISRin1 is 61% aa similar to ISPeth2.
References
1] ISfinder annotation (2010)
2] Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R. and Wilson,R.K. (2009) Direct submission GenBank.
2] Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R. and Wilson,R.K. (2009) Direct submission GenBank.