ISShsa1
- Family IS5
- Group IS5
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ACIP02000007 | ND | Shuttleworthia satelles | Shuttleworthia satelles DSM 14600 |
DNA section
IS Length : 1613 bp
Ends
IR Length : 12/13
IRL : GTGTCTGCTCAACCGAGTATGAAAGTGAATAATACAATGATATAGAGCCG
IRR : GTGTCTGCTCAGCAACCCCGGCTTCAAATGCCAGCTGGTTCTGAGCTGAT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AAAAGTCTTT | TATTTA | CTTTTTCCAA | 6 |
DNA sequence
GTGTCTGCTCAACCGAGTATGAAAGTGAATAATACAATGATATAGAGCCGCTTATGGGCACCTTCATGGCATAATGGAGATGCAGGGAAAAACCTGACAG
CACCTCAAAAACCTTGCATTTCAAAGGAAGTTCCCATGTATAAAAAAGAGCGACACCACCAATTCGGACGTACGGATTTTAACCAGCCCATAGGGCTGAA
GATGAACCCGGAAAACCGTTGGATCAAAAAAGCCGAACGAATCCCCTGGGATGAGATCGAAGACCGCTATGCGAGTCTGTTCCCGAGCCATACCGGTATG
CCGGCAAAGCCCTTGAGGGTTGCCCTTGGATCTCTCCTCATCCAGAAACAGTACAGTTACTCGGATCGGGAACTGGTGGAACAGATCACGGAAAACCCAT
ATTATCAATACTTCATCGGTCTTCACGGGTATCAGCAGAAGGCACCGTATGCGCCATCCCTGTTGGTAGAATTCCGGAAACGTCTCACAGACGAGATCCT
CGGGGAGATCAATGAGATGATAATCCGCCATAACCATCCGGATGATCCGGGGCCCGGGAGCCGCGATGCAGCACCGAATGATGGCGAGCCTTCCGAAAAC
TCCGGAACCCTGATCCTGGATGCGGCCTGTGCACCGCAGAACATCGCCTTCCCGCAGGATATCAACCTGTTGAATGAAGCAAGGGAGGACCTTGAGACAA
TCATCGATACCGTGTGTTATGAGTATAATGAGCCGAAACCAAGAATCTATCGTCGGAATGCCCGGAAGGACTACCTCGCGCTGGCAAAACAGCGCAGACG
TTCCTCCAAAGCAATTCGAAAGGCGATAAAAAAGCAGCTGCAGTATGTCCGCCGGGATCTTGGATTTATCGACACCTTCCTGGAAGAGGGAAAGGAATTG
TCCGCCAGAGACGCAGAGAGGCTTGCGGTGCTTCGCAGAGTCTATGAACAGCAGCGCTACATGTATGAGAACAATGTCCACACAGTAGCCGATAGGATTG
TGAACATCAGCCAGCCCTACATCCGACCGATTGTCAGAGGCAAGGCCAAAACTCCGACGGAATTCGGAACCAAACTGGATCTGAGTATCGATGACCATGG
GATAGCCAGGATCGAGAAGCAGTCCTTTGACGCTTACAATGAAGGAGATGTCCTGATCGGAGCGATAGAGCAGTACAAGGAACGTACTGGTCATTATCCG
GATCGGGCGCTCGTCGATAAGATTTATCGGAACCGGAAGAACCTTAGCTACTGCAGGCTTCATGGAATCAAACTGTCCGGTCCTGCGCTTGGCAGACCGA
AGAAAGATCCTTCCATCGACAGGAAGCAGGAATATCGAGATGCTGTAGATCGAATCGAAGTCGAAAGGAGCTTCAGCCTTGCCAAGCGTTGCTTTGGCCT
GGGCCTTATCCGTACGAAACTGGATACCACGACCAGAAGTTCCATCGTCCTGTCCATCATCGCGATGAATGTGGACAGGCTAACAGTCTTTTCTTTTGCC
GAATTTCTGGTATCGGTTTTTCGAGGTGCAACACTGGACATCTTATGGTGTCCAGGCTTTAATATCAGCTCAGAACCAGCTGGCATTTGAAGCCGGGGTT
GCTGAGCAGACAC
CACCTCAAAAACCTTGCATTTCAAAGGAAGTTCCCATGTATAAAAAAGAGCGACACCACCAATTCGGACGTACGGATTTTAACCAGCCCATAGGGCTGAA
GATGAACCCGGAAAACCGTTGGATCAAAAAAGCCGAACGAATCCCCTGGGATGAGATCGAAGACCGCTATGCGAGTCTGTTCCCGAGCCATACCGGTATG
CCGGCAAAGCCCTTGAGGGTTGCCCTTGGATCTCTCCTCATCCAGAAACAGTACAGTTACTCGGATCGGGAACTGGTGGAACAGATCACGGAAAACCCAT
ATTATCAATACTTCATCGGTCTTCACGGGTATCAGCAGAAGGCACCGTATGCGCCATCCCTGTTGGTAGAATTCCGGAAACGTCTCACAGACGAGATCCT
CGGGGAGATCAATGAGATGATAATCCGCCATAACCATCCGGATGATCCGGGGCCCGGGAGCCGCGATGCAGCACCGAATGATGGCGAGCCTTCCGAAAAC
TCCGGAACCCTGATCCTGGATGCGGCCTGTGCACCGCAGAACATCGCCTTCCCGCAGGATATCAACCTGTTGAATGAAGCAAGGGAGGACCTTGAGACAA
TCATCGATACCGTGTGTTATGAGTATAATGAGCCGAAACCAAGAATCTATCGTCGGAATGCCCGGAAGGACTACCTCGCGCTGGCAAAACAGCGCAGACG
TTCCTCCAAAGCAATTCGAAAGGCGATAAAAAAGCAGCTGCAGTATGTCCGCCGGGATCTTGGATTTATCGACACCTTCCTGGAAGAGGGAAAGGAATTG
TCCGCCAGAGACGCAGAGAGGCTTGCGGTGCTTCGCAGAGTCTATGAACAGCAGCGCTACATGTATGAGAACAATGTCCACACAGTAGCCGATAGGATTG
TGAACATCAGCCAGCCCTACATCCGACCGATTGTCAGAGGCAAGGCCAAAACTCCGACGGAATTCGGAACCAAACTGGATCTGAGTATCGATGACCATGG
GATAGCCAGGATCGAGAAGCAGTCCTTTGACGCTTACAATGAAGGAGATGTCCTGATCGGAGCGATAGAGCAGTACAAGGAACGTACTGGTCATTATCCG
GATCGGGCGCTCGTCGATAAGATTTATCGGAACCGGAAGAACCTTAGCTACTGCAGGCTTCATGGAATCAAACTGTCCGGTCCTGCGCTTGGCAGACCGA
AGAAAGATCCTTCCATCGACAGGAAGCAGGAATATCGAGATGCTGTAGATCGAATCGAAGTCGAAAGGAGCTTCAGCCTTGCCAAGCGTTGCTTTGGCCT
GGGCCTTATCCGTACGAAACTGGATACCACGACCAGAAGTTCCATCGTCCTGTCCATCATCGCGATGAATGTGGACAGGCTAACAGTCTTTTCTTTTGCC
GAATTTCTGGTATCGGTTTTTCGAGGTGCAACACTGGACATCTTATGGTGTCCAGGCTTTAATATCAGCTCAGAACCAGCTGGCATTTGAAGCCGGGGTT
GCTGAGCAGACAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1455 bp | 484 aa | 136 | 1590 | + | No |
Chemistry : DDE
ORF sequence :
MYKKERHHQFGRTDFNQPIGLKMNPENRWIKKAERIPWDEIEDRYASLFPSHTGMPAKPLRVALGSLLIQKQYSYSDRELVEQITENPYYQYFIGLHGYQ
QKAPYAPSLLVEFRKRLTDEILGEINEMIIRHNHPDDPGPGSRDAAPNDGEPSENSGTLILDAACAPQNIAFPQDINLLNEAREDLETIIDTVCYEYNEP
KPRIYRRNARKDYLALAKQRRRSSKAIRKAIKKQLQYVRRDLGFIDTFLEEGKELSARDAERLAVLRRVYEQQRYMYENNVHTVADRIVNISQPYIRPIV
RGKAKTPTEFGTKLDLSIDDHGIARIEKQSFDAYNEGDVLIGAIEQYKERTGHYPDRALVDKIYRNRKNLSYCRLHGIKLSGPALGRPKKDPSIDRKQEY
RDAVDRIEVERSFSLAKRCFGLGLIRTKLDTTTRSSIVLSIIAMNVDRLTVFSFAEFLVSVFRGATLDILWCPGFNISSEPAGI
QKAPYAPSLLVEFRKRLTDEILGEINEMIIRHNHPDDPGPGSRDAAPNDGEPSENSGTLILDAACAPQNIAFPQDINLLNEAREDLETIIDTVCYEYNEP
KPRIYRRNARKDYLALAKQRRRSSKAIRKAIKKQLQYVRRDLGFIDTFLEEGKELSARDAERLAVLRRVYEQQRYMYENNVHTVADRIVNISQPYIRPIV
RGKAKTPTEFGTKLDLSIDDHGIARIEKQSFDAYNEGDVLIGAIEQYKERTGHYPDRALVDKIYRNRKNLSYCRLHGIKLSGPALGRPKKDPSIDRKQEY
RDAVDRIEVERSFSLAKRCFGLGLIRTKLDTTTRSSIVLSIIAMNVDRLTVFSFAEFLVSVFRGATLDILWCPGFNISSEPAGI
Blast result :
Comments
ISShsa1 is 63% aa similar to ISPeth2.
References
1] ISfinder annotation (2010)
2] Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R. and Wilson,R.K. (2009) Direct submission.
2] Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R. and Wilson,R.K. (2009) Direct submission.