ISDha14
- Family IS5
- Group IS5
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011830 | ND | Desulfitobacterium hafniense | Desulfitobacterium hafniense DCB-2 |
DNA section
IS Length : 1692 bp
Ends
IR Length : 15/22
IRL : GGGCTTGCTTCATCCCATAAAAAATCAAGCTTTTCCCTGGATTCACAAGG
IRR : GGGCTTGCCAACCAAACCCCTATCTTCGTTTCATCCAGCAATTGGCGAAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TCCATCGTGG | TAATTA | CATCTGACAA | 6 |
DNA sequence
GGGCTTGCTTCATCCCATAAAAAATCAAGCTTTTCCCTGGATTCACAAGGGTTTGCGGGCTTATTGGTCGAATTCTAAGTCCAAGGAAATAGCCATTTTG
CTTAAAAAAACCGTGCACTTGGAGGTAAAACCATGTACCGTAAACCGAGTCCTCAGCTTACTATAGATGATTTCATTCTGCCTTTTGCAGGAAAGCTAGA
CGCCAAGAACCGTTGGGTCCAGCTGGCTTCGCTCATCCCCTGGGATGAATTTGAGGAGGACTATGCTTTCATGTTCCCCAGCGACCGGGGCAATGTAGCC
AAACCCGTCCGCATGGCCTTAGGTACGTTAATTATTCAGGCTCGTTGCGGTTATACCGACCGGGAAACAGTGCAACAACTCACAGAGAATCCATACCTGC
AGTACTTCATCGGGCTTAAAGAGTTCCAGCTGACGCGGCCGCTTACGCCAGCCGCCTTGGTGAAGTTTCGTAAGCGTTTCAAAAAAGAACGGATGATGCG
CATCAACGAACGCATTCTCTTGTCCGAGCAAGCTGCCCAAGCCGCTGAGACTCAGGCTCCAACAGACCGAACAGATGATGAGGAGGATCATGATCATCAT
GACCCGCAGGATCCGGGAGGTTCACAAGGCCAGTTCACGGAAGATGAATCATCGGCTGACGCTGCCGCAGAAGAAACCAAGCCCAATCAAGGAATCTTGA
TCCTCGACGCCACGTGTACCCCGGCAGACATCAAATACCCTACAGACCTGGGGCTGCTTAACGAAGCCCGGGAGAAGCTGGATGAGATGATTGACACCCT
GCATCAGGCCAGGGGTAGAGCAGCGAAGAGACCCAGAACCTATCGTCAAAAAGCGAGGAAAGCGTATCTTAACCTATCCAAGCAGAAAAGCCCGAGAAAA
AACCAGCTGAGAAAAGGCATCAAGCAACAACTGCAGTATTGCAAGCGCAACCTTCGGCACGTGGAGCGCATGCTCAACGGACGTTCTGCAGATGAGGACC
TCTTAAGCAACCGACACGTCAGGCTGTTAGAAACCCTACGGACCCTCGTCACACAGCAGGAAAGCATGTATAAAACCAAGCGGCATCAGATCCCGGCTCG
AATCGTCAGCCTTTACCAAGACCATGTCCGACCGATAGTAAGAGGCAAGGCCGGTGCCAAAGTAGAATTTGGGGCCAAAGTAGCCATCAGCATCGAAAAG
GGCATGTGCCGCATAGAGAAGTTATCCTGGGATGCGTTTAACGAAGCCGACACTCTGATGGAAAGCGTAGAACGCTACAAAGCAAGAAACGGCTGTTATC
CGGAAGCCGTCCTGGCGGATCGGATCTATCGCAACCGTAACAACCTGGCTTACTGCAAAAAGCACACCATCAGACTCAGTGGGCCTAAGCTGGGAAGGCC
ATCGGGTGAGGCGTTGAAGAAAATCGAGAAACAGCTGCAACGAATGGATGCCAAGCTGCGCAATGCCGTAGAAGGAAAATTCGGAGAAGGCAAGAGGAAC
TATGGATTGAACCGCATTTATGCCAAACTCAAAGAAACGGCAGAATGCATGATCAGCATGCAATTCTTTATCATGAACTTAGAGCGCAAGCTCAGAGTTC
TTTTTGTCCAATTTTGGAGGAGATGCTTTTTAGGCATGGCTTTTTCGCCAATTGCTGGATGAAACGAAGATAGGGGTTTGGTTGGCAAGCCC
CTTAAAAAAACCGTGCACTTGGAGGTAAAACCATGTACCGTAAACCGAGTCCTCAGCTTACTATAGATGATTTCATTCTGCCTTTTGCAGGAAAGCTAGA
CGCCAAGAACCGTTGGGTCCAGCTGGCTTCGCTCATCCCCTGGGATGAATTTGAGGAGGACTATGCTTTCATGTTCCCCAGCGACCGGGGCAATGTAGCC
AAACCCGTCCGCATGGCCTTAGGTACGTTAATTATTCAGGCTCGTTGCGGTTATACCGACCGGGAAACAGTGCAACAACTCACAGAGAATCCATACCTGC
AGTACTTCATCGGGCTTAAAGAGTTCCAGCTGACGCGGCCGCTTACGCCAGCCGCCTTGGTGAAGTTTCGTAAGCGTTTCAAAAAAGAACGGATGATGCG
CATCAACGAACGCATTCTCTTGTCCGAGCAAGCTGCCCAAGCCGCTGAGACTCAGGCTCCAACAGACCGAACAGATGATGAGGAGGATCATGATCATCAT
GACCCGCAGGATCCGGGAGGTTCACAAGGCCAGTTCACGGAAGATGAATCATCGGCTGACGCTGCCGCAGAAGAAACCAAGCCCAATCAAGGAATCTTGA
TCCTCGACGCCACGTGTACCCCGGCAGACATCAAATACCCTACAGACCTGGGGCTGCTTAACGAAGCCCGGGAGAAGCTGGATGAGATGATTGACACCCT
GCATCAGGCCAGGGGTAGAGCAGCGAAGAGACCCAGAACCTATCGTCAAAAAGCGAGGAAAGCGTATCTTAACCTATCCAAGCAGAAAAGCCCGAGAAAA
AACCAGCTGAGAAAAGGCATCAAGCAACAACTGCAGTATTGCAAGCGCAACCTTCGGCACGTGGAGCGCATGCTCAACGGACGTTCTGCAGATGAGGACC
TCTTAAGCAACCGACACGTCAGGCTGTTAGAAACCCTACGGACCCTCGTCACACAGCAGGAAAGCATGTATAAAACCAAGCGGCATCAGATCCCGGCTCG
AATCGTCAGCCTTTACCAAGACCATGTCCGACCGATAGTAAGAGGCAAGGCCGGTGCCAAAGTAGAATTTGGGGCCAAAGTAGCCATCAGCATCGAAAAG
GGCATGTGCCGCATAGAGAAGTTATCCTGGGATGCGTTTAACGAAGCCGACACTCTGATGGAAAGCGTAGAACGCTACAAAGCAAGAAACGGCTGTTATC
CGGAAGCCGTCCTGGCGGATCGGATCTATCGCAACCGTAACAACCTGGCTTACTGCAAAAAGCACACCATCAGACTCAGTGGGCCTAAGCTGGGAAGGCC
ATCGGGTGAGGCGTTGAAGAAAATCGAGAAACAGCTGCAACGAATGGATGCCAAGCTGCGCAATGCCGTAGAAGGAAAATTCGGAGAAGGCAAGAGGAAC
TATGGATTGAACCGCATTTATGCCAAACTCAAAGAAACGGCAGAATGCATGATCAGCATGCAATTCTTTATCATGAACTTAGAGCGCAAGCTCAGAGTTC
TTTTTGTCCAATTTTGGAGGAGATGCTTTTTAGGCATGGCTTTTTCGCCAATTGCTGGATGAAACGAAGATAGGGGTTTGGTTGGCAAGCCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1530 bp | 509 aa | 133 | 1662 | + | No |
Chemistry : DDE
ORF sequence :
MYRKPSPQLTIDDFILPFAGKLDAKNRWVQLASLIPWDEFEEDYAFMFPSDRGNVAKPVRMALGTLIIQARCGYTDRETVQQLTENPYLQYFIGLKEFQL
TRPLTPAALVKFRKRFKKERMMRINERILLSEQAAQAAETQAPTDRTDDEEDHDHHDPQDPGGSQGQFTEDESSADAAAEETKPNQGILILDATCTPADI
KYPTDLGLLNEAREKLDEMIDTLHQARGRAAKRPRTYRQKARKAYLNLSKQKSPRKNQLRKGIKQQLQYCKRNLRHVERMLNGRSADEDLLSNRHVRLLE
TLRTLVTQQESMYKTKRHQIPARIVSLYQDHVRPIVRGKAGAKVEFGAKVAISIEKGMCRIEKLSWDAFNEADTLMESVERYKARNGCYPEAVLADRIYR
NRNNLAYCKKHTIRLSGPKLGRPSGEALKKIEKQLQRMDAKLRNAVEGKFGEGKRNYGLNRIYAKLKETAECMISMQFFIMNLERKLRVLFVQFWRRCFL
GMAFSPIAG
TRPLTPAALVKFRKRFKKERMMRINERILLSEQAAQAAETQAPTDRTDDEEDHDHHDPQDPGGSQGQFTEDESSADAAAEETKPNQGILILDATCTPADI
KYPTDLGLLNEAREKLDEMIDTLHQARGRAAKRPRTYRQKARKAYLNLSKQKSPRKNQLRKGIKQQLQYCKRNLRHVERMLNGRSADEDLLSNRHVRLLE
TLRTLVTQQESMYKTKRHQIPARIVSLYQDHVRPIVRGKAGAKVEFGAKVAISIEKGMCRIEKLSWDAFNEADTLMESVERYKARNGCYPEAVLADRIYR
NRNNLAYCKKHTIRLSGPKLGRPSGEALKKIEKQLQRMDAKLRNAVEGKFGEGKRNYGLNRIYAKLKETAECMISMQFFIMNLERKLRVLFVQFWRRCFL
GMAFSPIAG
Blast result :
Comments
ISDha14 is 69% aa similar to ISPeth2.
References
1] ISfinder annotation (2010)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Madsen,T., Christiansen,N., Ahring,B., Marsh,T., Harzman,C., Davis,J.K., Kim,S.-H. and Tiedje,J.M. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Madsen,T., Christiansen,N., Ahring,B., Marsh,T., Harzman,C., Davis,J.K., Kim,S.-H. and Tiedje,J.M. (2009) Direct submission GenBank.