ISPaen2
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_GG695980 | ND | Paenibacillus sp. | Paenibacillus sp. oral taxon 786 D14 |
DNA section
IS Length : 1786 bp
Ends
IR Length : 15/17
IRL : GGGCTTGCTGAACACTTAAAAAAAACAACAAAAACCGCATAACAACAAGG
IRR : GGGCTTGCTGAACGATTCTTTAACCGAAACTCATGGCTAGGCGACTGCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTTTATTAT | TAAATA | ACTAATCGAA | 6 |
DNA sequence
GGGCTTGCTGAACACTTAAAAAAAACAACAAAAACCGCATAACAACAAGGATTCTAAGGCCCATTTGTCGAAATCATATGCAAAGGAAATGTTTGAAAAC
CACCTAAAACCTTTGCAGATGGAGTGACGAAGATGTTTAAGCCGACCGCGCACCTCGATAATCAATTGATCCTGCCCGGCGATTTCTTTCTGCCCTTTGG
CGGAAAGCTGGACGAGGACAATCGCTGGGTCCAGTTGGCGCGGTTGGTGCCGTGGGCGGAGGCTGAGAAAACATACGGTCAATTTTTCAAAGACACCTTT
CGCGGCCAGCAAACGATCAGTCTTCGGATGGGGCTCGGTGCGCTCATCATTCAGGAGCGAATGCAACTGACCGACAGAGAAACGTTGGAGTCGATCAGCG
AAAATCCTTACATGCAATACTTCATTGGTCTGCCTGGATTCGTCATGAAGCCACCGTTCCATCACTCCATGATGACGCATTTCCGCAAGCGTCTGACGGA
CGTGCTGGCAGAGTTGAATGAGATCGTCGCCACCGAAGGTGCGAAGGAAACGAAAGATGATGATGACAGCAACGACGCGACCGGCGGCGGTAAAGGCCAA
GGGAAGCGCTCGAAGAAGCGCGCCTCTGATGAAGAAGTCGAGCAGCAAACCATGTTTGCACAATCGCAAGTCGCATCGTCAGAAGCAGCGTCTCCCGTGG
AGTCGATGGCTACAGAGTCAGAGGTTCCTGAAACGAATAAACTTGTTTGCGAAGCGCATCCGAAATCGACCGCAGAATGGGAAGCCCCTGAGCAGCCGAA
TCAAGGGACCGTGCTGGTGGATGCCACCTGTGCGCCGGCGGATGTGGCGTATCCGACCGATCTGAATCTGTTGAATGAAGCGCGGGAGAAGCTCGAAGCG
ATCATCGATACGCTGCATGAGCCGGTCATCGGACAAATGGCGAAACCGCGCACGTACCGGGAAAAAGCGCGCAAACAGTTTCTGGCCGTTTCCAAGCAAC
GCAGACCGGGGCCGAAAGTGATTCGCAAAGCGATCAGGAGGCAACTCGGTTACGTTGGACGGAACCTCTCCATCATCGCCGAGCAAGCCAAGTCGCAACC
GCTCACGCTACTTGGCCGCAAAGCCTATCGCGACCTGCTGGTGATTCACGAACTGTACCGTCAGCAGCTTCACATGTACAACGAGCGTTCCCACCAGATG
GAAGACCGGGTCGTCAGCATTCATCAGCCGCATGTCAGGCCGATCGTGCGCGGGAAAGCCAAGGCGCGCGTCGAGTTCGGAGCCAAGATCGCGGTAAGCA
TGACGAAGGGCTACGCGTTCCTTGATCGGCTATCTTGGGATAACTTCAACGAGAGCACGACGCTCATGGACGTGATCGAGAAGTATCGCAGCCGCATGGG
ATTCTATCCGGCTGTCGTCCAAGCGGATCAGATCTACCGCACACGCGAAAACCGGAGATTCTGCAAACAGCATGGGATTCGGCTCAGCGGACCGGCACTG
GGACGCAAGCCGAAAAACGGCCCGACAAGCGAAGATAGGCAAGTGGCCAAACAGGATACCGGAGAACGAAACGCAATCGAAGGCAAGTTCGGAGAAGGCA
AGCGCAAGTACGGGCTTGGCTGTATTCGAGCACGCCTCGCAAAGACAAGTGAATCCGTGATTACGCTGCAACTTCTGGTGATGAACCTGGAGCGCAGGCT
CCGCGTTCTTTTTTGCCTCATTTTTACGCTGCTATCTCGCAGTCGCCTAGCCATGAGTTTCGGTTAAAGAATCGTTCAGCAAGCCC
CACCTAAAACCTTTGCAGATGGAGTGACGAAGATGTTTAAGCCGACCGCGCACCTCGATAATCAATTGATCCTGCCCGGCGATTTCTTTCTGCCCTTTGG
CGGAAAGCTGGACGAGGACAATCGCTGGGTCCAGTTGGCGCGGTTGGTGCCGTGGGCGGAGGCTGAGAAAACATACGGTCAATTTTTCAAAGACACCTTT
CGCGGCCAGCAAACGATCAGTCTTCGGATGGGGCTCGGTGCGCTCATCATTCAGGAGCGAATGCAACTGACCGACAGAGAAACGTTGGAGTCGATCAGCG
AAAATCCTTACATGCAATACTTCATTGGTCTGCCTGGATTCGTCATGAAGCCACCGTTCCATCACTCCATGATGACGCATTTCCGCAAGCGTCTGACGGA
CGTGCTGGCAGAGTTGAATGAGATCGTCGCCACCGAAGGTGCGAAGGAAACGAAAGATGATGATGACAGCAACGACGCGACCGGCGGCGGTAAAGGCCAA
GGGAAGCGCTCGAAGAAGCGCGCCTCTGATGAAGAAGTCGAGCAGCAAACCATGTTTGCACAATCGCAAGTCGCATCGTCAGAAGCAGCGTCTCCCGTGG
AGTCGATGGCTACAGAGTCAGAGGTTCCTGAAACGAATAAACTTGTTTGCGAAGCGCATCCGAAATCGACCGCAGAATGGGAAGCCCCTGAGCAGCCGAA
TCAAGGGACCGTGCTGGTGGATGCCACCTGTGCGCCGGCGGATGTGGCGTATCCGACCGATCTGAATCTGTTGAATGAAGCGCGGGAGAAGCTCGAAGCG
ATCATCGATACGCTGCATGAGCCGGTCATCGGACAAATGGCGAAACCGCGCACGTACCGGGAAAAAGCGCGCAAACAGTTTCTGGCCGTTTCCAAGCAAC
GCAGACCGGGGCCGAAAGTGATTCGCAAAGCGATCAGGAGGCAACTCGGTTACGTTGGACGGAACCTCTCCATCATCGCCGAGCAAGCCAAGTCGCAACC
GCTCACGCTACTTGGCCGCAAAGCCTATCGCGACCTGCTGGTGATTCACGAACTGTACCGTCAGCAGCTTCACATGTACAACGAGCGTTCCCACCAGATG
GAAGACCGGGTCGTCAGCATTCATCAGCCGCATGTCAGGCCGATCGTGCGCGGGAAAGCCAAGGCGCGCGTCGAGTTCGGAGCCAAGATCGCGGTAAGCA
TGACGAAGGGCTACGCGTTCCTTGATCGGCTATCTTGGGATAACTTCAACGAGAGCACGACGCTCATGGACGTGATCGAGAAGTATCGCAGCCGCATGGG
ATTCTATCCGGCTGTCGTCCAAGCGGATCAGATCTACCGCACACGCGAAAACCGGAGATTCTGCAAACAGCATGGGATTCGGCTCAGCGGACCGGCACTG
GGACGCAAGCCGAAAAACGGCCCGACAAGCGAAGATAGGCAAGTGGCCAAACAGGATACCGGAGAACGAAACGCAATCGAAGGCAAGTTCGGAGAAGGCA
AGCGCAAGTACGGGCTTGGCTGTATTCGAGCACGCCTCGCAAAGACAAGTGAATCCGTGATTACGCTGCAACTTCTGGTGATGAACCTGGAGCGCAGGCT
CCGCGTTCTTTTTTGCCTCATTTTTACGCTGCTATCTCGCAGTCGCCTAGCCATGAGTTTCGGTTAAAGAATCGTTCAGCAAGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1635 bp | 544 aa | 133 | 1767 | + | No |
Chemistry : DDE
ORF sequence :
MFKPTAHLDNQLILPGDFFLPFGGKLDEDNRWVQLARLVPWAEAEKTYGQFFKDTFRGQQTISLRMGLGALIIQERMQLTDRETLESISENPYMQYFIGL
PGFVMKPPFHHSMMTHFRKRLTDVLAELNEIVATEGAKETKDDDDSNDATGGGKGQGKRSKKRASDEEVEQQTMFAQSQVASSEAASPVESMATESEVPE
TNKLVCEAHPKSTAEWEAPEQPNQGTVLVDATCAPADVAYPTDLNLLNEAREKLEAIIDTLHEPVIGQMAKPRTYREKARKQFLAVSKQRRPGPKVIRKA
IRRQLGYVGRNLSIIAEQAKSQPLTLLGRKAYRDLLVIHELYRQQLHMYNERSHQMEDRVVSIHQPHVRPIVRGKAKARVEFGAKIAVSMTKGYAFLDRL
SWDNFNESTTLMDVIEKYRSRMGFYPAVVQADQIYRTRENRRFCKQHGIRLSGPALGRKPKNGPTSEDRQVAKQDTGERNAIEGKFGEGKRKYGLGCIRA
RLAKTSESVITLQLLVMNLERRLRVLFCLIFTLLSRSRLAMSFG
PGFVMKPPFHHSMMTHFRKRLTDVLAELNEIVATEGAKETKDDDDSNDATGGGKGQGKRSKKRASDEEVEQQTMFAQSQVASSEAASPVESMATESEVPE
TNKLVCEAHPKSTAEWEAPEQPNQGTVLVDATCAPADVAYPTDLNLLNEAREKLEAIIDTLHEPVIGQMAKPRTYREKARKQFLAVSKQRRPGPKVIRKA
IRRQLGYVGRNLSIIAEQAKSQPLTLLGRKAYRDLLVIHELYRQQLHMYNERSHQMEDRVVSIHQPHVRPIVRGKAKARVEFGAKIAVSMTKGYAFLDRL
SWDNFNESTTLMDVIEKYRSRMGFYPAVVQADQIYRTRENRRFCKQHGIRLSGPALGRKPKNGPTSEDRQVAKQDTGERNAIEGKFGEGKRKYGLGCIRA
RLAKTSESVITLQLLVMNLERRLRVLFCLIFTLLSRSRLAMSFG
Blast result :
Comments
ISPaen2 is 69% aa similar to ISAcma17.
References
1] ISfinder annotation (2010)
2] Ward,D., Young,S.K., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yandava,C., Allen-Vercoe,E., Strauss,J., Sibley,C., White,A., Lander,E., Nusbaum,C., Galagan,J. and Birren,B. (2009) Direct submission GenBank.
2] Ward,D., Young,S.K., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yandava,C., Allen-Vercoe,E., Strauss,J., Sibley,C., White,A., Lander,E., Nusbaum,C., Galagan,J. and Birren,B. (2009) Direct submission GenBank.