ISSysp4
- Family IS5
- Group IS5
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AANO01000005 | ND | Synechococcus sp. | Synechococcus sp. WH 5701 |
DNA section
IS Length : 1724 bp
Ends
IR Length : 12/14
IRL : GGGCTTCCTGAAGATCTCCAGACCGCTTGCAGTGCAGTGGATCTGGGCAC
IRR : GGGCCTCCTGAAAAAGCTATTGCTCGGGCCAGCCTCATATCCAGAGATGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AGGGGTTCCT | TAAGTA | TCAATTAGAG | 6 |
| TGATTGCCCTTTGCTAAGCTT | TAAATACGCAGACCGCTACC | 0 | |
| CCACTCACTC | TATTTA | AAAGCAGCGG | 6 |
DNA sequence
GGGCTTCCTGAAGATCTCCAGACCGCTTGCAGTGCAGTGGATCTGGGCACTTCTATGGCGGTATAATGTGCGCAAATCGGCTGGATTGAGCCGAAAAGCT
GCACCAAGTTTTCCACATGTACCGCCGCAAGGAAGGCAATCAGCTCTCCTTTGATGATTTCTTCCTCCCATTCGGCGGGAAGCTCTCGGGGGATAACCGC
TGGGTGAAGTTGGCGGATCTGATCCCTTGGGATGAGCTGGAGCATCACTACGCCTCGCAGTTTTCAAAGGGGTTCGGAGCGCCTGCCAAGCCTTTTCGCA
TGGCCCTTGGTGCCTTGATCATCAAGGAGCGCTTGCAGGTCACCGACGAAGAGCTCGTTGAGCAGATCAAGGAAAATCCCTATCTTCAGTTCTTTCTTGG
CTTGGAAGGCTTCCAGTTCGAGGCACCGTTTGATCCCTCGATGATGGTGTATTTCCGTCGTCGGCTGCCAGAGAAGACCATCAATGACTGCAACGAGCGG
ATCGTCCGGCATGGCAAACAACAAATTGCGCAGAATAAACAAGGCGACAATGATGATCCTGATGATGGTGACGGATCAGTGCCTGCCGCTCTTGAACGCC
CCAGCCAAGATGCGAAGGCGCCCAAGAGGCATCAAGGAATCCTTCTGATTGACGCCACATGCGTGCCCAGCGATATTCGCTATCCCACTGATCTCTCTCT
TCTCAATGAAGCCCGCGAAACGACAGAGAAGCTGATTGATGAGATGCACAAGCAAGTGCGTGATGTGTTTGGCCACAAACCAAGAACCAACCAGCGTCAG
GCCCGTCGTCAATTCCTGGCGGTGGCCAAGAAGAAGCGTCCGCGCCTCAGCAAGATTCGCAAGGCCATTGGTCAGCAGCTCCGGCATCTGGCTCGGAACC
TGTCCAGTATCGATGCTCTGATCGCCTGCGGTGCAAGAGTTTTGGCGGCTGGTCGCCATTGGTATCGCAAGCTGTTGGTGATCAGTGAGCTGGTGAGGCA
GCAAAAGATCCTGTATCACTCAGACACCAGAAGTATTCAGGATCGAATCGTCAGCTTGACACAACCTCACATCAGGCCAATCGTTCGTGGCAAGACCAGA
AATAATGTTGAATTCGGTGCCAAGATCTCGATCTCGGTCAGTGGCGATGGGTTTGCATTCCTGGATCGTCTCAGCTGGGATCCCTACAACGAAGGAGAAG
ACCTAAAATCCCAGGTACGCACTTTTCACCGTCGCCATGGCTTTTATCCAAAGGTTGTCTGTGCTGATCAGATCTATCGCACACGATCCAATCGCGCCTT
ATGCATGAGGCATGGAATTCGCTTGAGCGGGCCGCGTCTTGGCAGGCCAAAAAATGATCCTGATCTCGTCGCTGCAGAGAAGAAGATCGCTCTCGATGAT
CAGAGGCAACGCAACGGTGTAGAGGGGAAGTTCGGCCAAGGGAAACGCCGTTTCGGGCTTGGGCTCGTTCGTGAGAAGCTGGCCGAGACCTCAGGTTGCA
CCATCGCCATGAATCTGTTGGTCATGAACCTCGAGAAGCTCCTGGAGCTTCTTTTTGTATTGATTGCCATATTCCAAGGCTTGCTAATGGTATGTATCGC
CTCTAAGAGGCGCCCCACGCTGCTCATTTCATCGGGACTGAGTTTGGCTACATGCTGAGATGATCACGGCACAGGCATCTCTGGATATGAGGCTGGCCCG
AGCAATAGCTTTTTCAGGAGGCCC
GCACCAAGTTTTCCACATGTACCGCCGCAAGGAAGGCAATCAGCTCTCCTTTGATGATTTCTTCCTCCCATTCGGCGGGAAGCTCTCGGGGGATAACCGC
TGGGTGAAGTTGGCGGATCTGATCCCTTGGGATGAGCTGGAGCATCACTACGCCTCGCAGTTTTCAAAGGGGTTCGGAGCGCCTGCCAAGCCTTTTCGCA
TGGCCCTTGGTGCCTTGATCATCAAGGAGCGCTTGCAGGTCACCGACGAAGAGCTCGTTGAGCAGATCAAGGAAAATCCCTATCTTCAGTTCTTTCTTGG
CTTGGAAGGCTTCCAGTTCGAGGCACCGTTTGATCCCTCGATGATGGTGTATTTCCGTCGTCGGCTGCCAGAGAAGACCATCAATGACTGCAACGAGCGG
ATCGTCCGGCATGGCAAACAACAAATTGCGCAGAATAAACAAGGCGACAATGATGATCCTGATGATGGTGACGGATCAGTGCCTGCCGCTCTTGAACGCC
CCAGCCAAGATGCGAAGGCGCCCAAGAGGCATCAAGGAATCCTTCTGATTGACGCCACATGCGTGCCCAGCGATATTCGCTATCCCACTGATCTCTCTCT
TCTCAATGAAGCCCGCGAAACGACAGAGAAGCTGATTGATGAGATGCACAAGCAAGTGCGTGATGTGTTTGGCCACAAACCAAGAACCAACCAGCGTCAG
GCCCGTCGTCAATTCCTGGCGGTGGCCAAGAAGAAGCGTCCGCGCCTCAGCAAGATTCGCAAGGCCATTGGTCAGCAGCTCCGGCATCTGGCTCGGAACC
TGTCCAGTATCGATGCTCTGATCGCCTGCGGTGCAAGAGTTTTGGCGGCTGGTCGCCATTGGTATCGCAAGCTGTTGGTGATCAGTGAGCTGGTGAGGCA
GCAAAAGATCCTGTATCACTCAGACACCAGAAGTATTCAGGATCGAATCGTCAGCTTGACACAACCTCACATCAGGCCAATCGTTCGTGGCAAGACCAGA
AATAATGTTGAATTCGGTGCCAAGATCTCGATCTCGGTCAGTGGCGATGGGTTTGCATTCCTGGATCGTCTCAGCTGGGATCCCTACAACGAAGGAGAAG
ACCTAAAATCCCAGGTACGCACTTTTCACCGTCGCCATGGCTTTTATCCAAAGGTTGTCTGTGCTGATCAGATCTATCGCACACGATCCAATCGCGCCTT
ATGCATGAGGCATGGAATTCGCTTGAGCGGGCCGCGTCTTGGCAGGCCAAAAAATGATCCTGATCTCGTCGCTGCAGAGAAGAAGATCGCTCTCGATGAT
CAGAGGCAACGCAACGGTGTAGAGGGGAAGTTCGGCCAAGGGAAACGCCGTTTCGGGCTTGGGCTCGTTCGTGAGAAGCTGGCCGAGACCTCAGGTTGCA
CCATCGCCATGAATCTGTTGGTCATGAACCTCGAGAAGCTCCTGGAGCTTCTTTTTGTATTGATTGCCATATTCCAAGGCTTGCTAATGGTATGTATCGC
CTCTAAGAGGCGCCCCACGCTGCTCATTTCATCGGGACTGAGTTTGGCTACATGCTGAGATGATCACGGCACAGGCATCTCTGGATATGAGGCTGGCCCG
AGCAATAGCTTTTTCAGGAGGCCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1542 bp | 513 aa | 117 | 1658 | + | No |
Chemistry : DDE
ORF sequence :
MYRRKEGNQLSFDDFFLPFGGKLSGDNRWVKLADLIPWDELEHHYASQFSKGFGAPAKPFRMALGALIIKERLQVTDEELVEQIKENPYLQFFLGLEGFQ
FEAPFDPSMMVYFRRRLPEKTINDCNERIVRHGKQQIAQNKQGDNDDPDDGDGSVPAALERPSQDAKAPKRHQGILLIDATCVPSDIRYPTDLSLLNEAR
ETTEKLIDEMHKQVRDVFGHKPRTNQRQARRQFLAVAKKKRPRLSKIRKAIGQQLRHLARNLSSIDALIACGARVLAAGRHWYRKLLVISELVRQQKILY
HSDTRSIQDRIVSLTQPHIRPIVRGKTRNNVEFGAKISISVSGDGFAFLDRLSWDPYNEGEDLKSQVRTFHRRHGFYPKVVCADQIYRTRSNRALCMRHG
IRLSGPRLGRPKNDPDLVAAEKKIALDDQRQRNGVEGKFGQGKRRFGLGLVREKLAETSGCTIAMNLLVMNLEKLLELLFVLIAIFQGLLMVCIASKRRP
TLLISSGLSLATC
FEAPFDPSMMVYFRRRLPEKTINDCNERIVRHGKQQIAQNKQGDNDDPDDGDGSVPAALERPSQDAKAPKRHQGILLIDATCVPSDIRYPTDLSLLNEAR
ETTEKLIDEMHKQVRDVFGHKPRTNQRQARRQFLAVAKKKRPRLSKIRKAIGQQLRHLARNLSSIDALIACGARVLAAGRHWYRKLLVISELVRQQKILY
HSDTRSIQDRIVSLTQPHIRPIVRGKTRNNVEFGAKISISVSGDGFAFLDRLSWDPYNEGEDLKSQVRTFHRRHGFYPKVVCADQIYRTRSNRALCMRHG
IRLSGPRLGRPKNDPDLVAAEKKIALDDQRQRNGVEGKFGQGKRRFGLGLVREKLAETSGCTIAMNLLVMNLEKLLELLFVLIAIFQGLLMVCIASKRRP
TLLISSGLSLATC
Blast result :
Comments
ISSysp7 is 66% aa similar to ISAcma17.
References
1] ISfinder annotation (2010)
2] Scanlan,D., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.
2] Scanlan,D., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.