ISPeth2
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009454 | ND | Pelotomaculum thermopropionicum | Pelotomaculum thermopropionicum SI |
DNA section
IS Length : 1642 bp
Ends
IR Length : 13/14
IRL : GGGCTTGCTGAATAGCCATAAATTCCAGTAGTACCAAGGGATTAAGGGCC
IRR : GGGCTTGCTGAACAAGTTTTCCAATTTCACAAACTGCTCTTAGATAACCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTAACGCTTGAATGG | T/GAATTA | GTTGAATACTA | 8 |
DNA sequence
GGGCTTGCTGAATAGCCATAAATTCCAGTAGTACCAAGGGATTAAGGGCCTTTTTGTCGAATTATTCTCCAAGGAAAACAGGCTCAATCATGTAAAAAGC
TTGCACTTGGAGGCTGATAATATGTACCGGCGTCCCACCGGTCAGATGGTTATTGAAGACTTCGTACTTCCCTTCGAAGGAAAACTTGATGCCAACAACC
GCTGGGTGAAACTGGCCAAGATAATACCCTGGGAGCAGATCGAAAATGAATATGCCGATCTTTTCCCGTCCAATACCGGTACAGTGGCAAAGCCCTTGCG
TATGGCCCTGGGCGCCTTGATCATCAAAGAACGTTGCGGATATACCGACAGGGAGACGGTGGAGCAGATCACCGAAAACCCCTATCTCCAGTATTTCATC
GGGCTGGAGAAATACCAGATAGAACCGCCCTTCGATCCCTCGTTAATGGTCCATTTCCGGAAACGGTTGGATCAAAAGATCATAAAGAAAATTAACGAGC
TGATCTGCCAGAGCGAAAAACACAAGGAACAAAAAGACAAAGATCCAAAAGACAAGGACCCAAAAGACAAAGACCCAGGCAATCCATCAGGCTCCGGTAA
TTTTGAAGTATGGAAGCCGGAAGTGAACAAGGGCAAGTTGCTGCTTGACGCTACCTGCGCCCCGGCAGACATCCGGTATCCCACTGACCTCTCCCTTCTC
AATGAGGCCAGGGAAAAAACGGAAAAGATGATCGACACCCTGTACAATCAGGAACTCGGACTGGCCAGGAAACCCCGTACCTACCGCAAGCGGGCGAGAA
AAGACTACCTGAAGTTCGCCAGGCAGAGAAAACCGCATGTGAAGGCTATTCGTAAGGCTATCGGTAAACAACTGGGGTACCTTCGCAGAAACCTGGGCAC
AATCGATTTTCTTCTAAAGCGTGATGGCCATGGCAATTTGAGCGCCCGGCAGTCTAGAGAACTGGAAACCATTCGTATTCTCTACGCCCAGCAGCGGGAG
ATGTACCAGACAAGGACACACCGTATCGATGATCGCATAGTCAGCATCTCTCAGCCCCACGTGCGTCCCATAGTAAGGGGCAAGGCCAGGGCGGAGACCG
AGTTTGGGGCTAAAGTGGCCATTAGCATGGTTGATGGATACGCCTTCATCGATCACCTCAGCTGGGATTCCTTCAACGAAAGTCTTGGCTTAAAACAGGC
GGTCGAAGACTACAAGAAACGGTACGGTCACTATCCGGAAGCAGTCCTGGCCGACCAGTTATATCGCACCAGAGAAAACCTCTCTTTCTGCAGAAAACAT
GGCATCAGGCTGAGCGGGCCGCCGCTGGGCCGTCCATTGCTCGATGGTAGACAAGAGAAGAAAATCGCGCGCCAGGACATGAGGGAACGCAACGCTATTG
AAGGCGGTTTTGGCGTATGCAAGCGCAGATACGGCCTGGCCAGGATCATGGCACGCCTCAAAGAGACGGCAGAGAGCGTCATTGCGCTGCAGTTCCTGGT
AATGAACTTGGAACACCGGCTCCGGCTTCTTTTTTGCCATTTTATATGCGCCATCTTGAAGACTTATAAGGACCAAAATTACACTGTGTATGCGGTTATC
TAAGAGCAGTTTGTGAAATTGGAAAACTTGTTCAGCAAGCCC
TTGCACTTGGAGGCTGATAATATGTACCGGCGTCCCACCGGTCAGATGGTTATTGAAGACTTCGTACTTCCCTTCGAAGGAAAACTTGATGCCAACAACC
GCTGGGTGAAACTGGCCAAGATAATACCCTGGGAGCAGATCGAAAATGAATATGCCGATCTTTTCCCGTCCAATACCGGTACAGTGGCAAAGCCCTTGCG
TATGGCCCTGGGCGCCTTGATCATCAAAGAACGTTGCGGATATACCGACAGGGAGACGGTGGAGCAGATCACCGAAAACCCCTATCTCCAGTATTTCATC
GGGCTGGAGAAATACCAGATAGAACCGCCCTTCGATCCCTCGTTAATGGTCCATTTCCGGAAACGGTTGGATCAAAAGATCATAAAGAAAATTAACGAGC
TGATCTGCCAGAGCGAAAAACACAAGGAACAAAAAGACAAAGATCCAAAAGACAAGGACCCAAAAGACAAAGACCCAGGCAATCCATCAGGCTCCGGTAA
TTTTGAAGTATGGAAGCCGGAAGTGAACAAGGGCAAGTTGCTGCTTGACGCTACCTGCGCCCCGGCAGACATCCGGTATCCCACTGACCTCTCCCTTCTC
AATGAGGCCAGGGAAAAAACGGAAAAGATGATCGACACCCTGTACAATCAGGAACTCGGACTGGCCAGGAAACCCCGTACCTACCGCAAGCGGGCGAGAA
AAGACTACCTGAAGTTCGCCAGGCAGAGAAAACCGCATGTGAAGGCTATTCGTAAGGCTATCGGTAAACAACTGGGGTACCTTCGCAGAAACCTGGGCAC
AATCGATTTTCTTCTAAAGCGTGATGGCCATGGCAATTTGAGCGCCCGGCAGTCTAGAGAACTGGAAACCATTCGTATTCTCTACGCCCAGCAGCGGGAG
ATGTACCAGACAAGGACACACCGTATCGATGATCGCATAGTCAGCATCTCTCAGCCCCACGTGCGTCCCATAGTAAGGGGCAAGGCCAGGGCGGAGACCG
AGTTTGGGGCTAAAGTGGCCATTAGCATGGTTGATGGATACGCCTTCATCGATCACCTCAGCTGGGATTCCTTCAACGAAAGTCTTGGCTTAAAACAGGC
GGTCGAAGACTACAAGAAACGGTACGGTCACTATCCGGAAGCAGTCCTGGCCGACCAGTTATATCGCACCAGAGAAAACCTCTCTTTCTGCAGAAAACAT
GGCATCAGGCTGAGCGGGCCGCCGCTGGGCCGTCCATTGCTCGATGGTAGACAAGAGAAGAAAATCGCGCGCCAGGACATGAGGGAACGCAACGCTATTG
AAGGCGGTTTTGGCGTATGCAAGCGCAGATACGGCCTGGCCAGGATCATGGCACGCCTCAAAGAGACGGCAGAGAGCGTCATTGCGCTGCAGTTCCTGGT
AATGAACTTGGAACACCGGCTCCGGCTTCTTTTTTGCCATTTTATATGCGCCATCTTGAAGACTTATAAGGACCAAAATTACACTGTGTATGCGGTTATC
TAAGAGCAGTTTGTGAAATTGGAAAACTTGTTCAGCAAGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1482 bp | 493 aa | 122 | 1603 | + | No |
Chemistry : DDE
ORF sequence :
MYRRPTGQMVIEDFVLPFEGKLDANNRWVKLAKIIPWEQIENEYADLFPSNTGTVAKPLRMALGALIIKERCGYTDRETVEQITENPYLQYFIGLEKYQI
EPPFDPSLMVHFRKRLDQKIIKKINELICQSEKHKEQKDKDPKDKDPKDKDPGNPSGSGNFEVWKPEVNKGKLLLDATCAPADIRYPTDLSLLNEAREKT
EKMIDTLYNQELGLARKPRTYRKRARKDYLKFARQRKPHVKAIRKAIGKQLGYLRRNLGTIDFLLKRDGHGNLSARQSRELETIRILYAQQREMYQTRTH
RIDDRIVSISQPHVRPIVRGKARAETEFGAKVAISMVDGYAFIDHLSWDSFNESLGLKQAVEDYKKRYGHYPEAVLADQLYRTRENLSFCRKHGIRLSGP
PLGRPLLDGRQEKKIARQDMRERNAIEGGFGVCKRRYGLARIMARLKETAESVIALQFLVMNLEHRLRLLFCHFICAILKTYKDQNYTVYAVI
EPPFDPSLMVHFRKRLDQKIIKKINELICQSEKHKEQKDKDPKDKDPKDKDPGNPSGSGNFEVWKPEVNKGKLLLDATCAPADIRYPTDLSLLNEAREKT
EKMIDTLYNQELGLARKPRTYRKRARKDYLKFARQRKPHVKAIRKAIGKQLGYLRRNLGTIDFLLKRDGHGNLSARQSRELETIRILYAQQREMYQTRTH
RIDDRIVSISQPHVRPIVRGKARAETEFGAKVAISMVDGYAFIDHLSWDSFNESLGLKQAVEDYKKRYGHYPEAVLADQLYRTRENLSFCRKHGIRLSGP
PLGRPLLDGRQEKKIARQDMRERNAIEGGFGVCKRRYGLARIMARLKETAESVIALQFLVMNLEHRLRLLFCHFICAILKTYKDQNYTVYAVI
Blast result :
Comments
ISPeth2 is 66% aa similar to ISAcma17.
References
1] ISfinder annotation (2010)
2] Kosaka,T., Kato,S., Shimoyama,T., Ishii,S., Abe,T. and Watanabe,K.(2008) Genome Res. 18 (3), 442-448
2] Kosaka,T., Kato,S., Shimoyama,T., Ishii,S., Abe,T. and Watanabe,K.(2008) Genome Res. 18 (3), 442-448