ISPeth2

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009454 ND Pelotomaculum thermopropionicum
Pelotomaculum thermopropionicum SI
DNA section
IS Length : 1642 bp

Ends


IR Length : 13/14

IRL : GGGCTTGCTGAATAGCCATAAATTCCAGTAGTACCAAGGGATTAAGGGCC
IRR : GGGCTTGCTGAACAAGTTTTCCAATTTCACAAACTGCTCTTAGATAACCG

Insertion site


Left flankDirect repeatRight flankDR Length
TTAACGCTTGAATGGT/GAATTAGTTGAATACTA8

DNA sequence

GGGCTTGCTGAATAGCCATAAATTCCAGTAGTACCAAGGGATTAAGGGCCTTTTTGTCGAATTATTCTCCAAGGAAAACAGGCTCAATCATGTAAAAAGC
TTGCACTTGGAGGCTGATAATATGTACCGGCGTCCCACCGGTCAGATGGTTATTGAAGACTTCGTACTTCCCTTCGAAGGAAAACTTGATGCCAACAACC
GCTGGGTGAAACTGGCCAAGATAATACCCTGGGAGCAGATCGAAAATGAATATGCCGATCTTTTCCCGTCCAATACCGGTACAGTGGCAAAGCCCTTGCG
TATGGCCCTGGGCGCCTTGATCATCAAAGAACGTTGCGGATATACCGACAGGGAGACGGTGGAGCAGATCACCGAAAACCCCTATCTCCAGTATTTCATC
GGGCTGGAGAAATACCAGATAGAACCGCCCTTCGATCCCTCGTTAATGGTCCATTTCCGGAAACGGTTGGATCAAAAGATCATAAAGAAAATTAACGAGC
TGATCTGCCAGAGCGAAAAACACAAGGAACAAAAAGACAAAGATCCAAAAGACAAGGACCCAAAAGACAAAGACCCAGGCAATCCATCAGGCTCCGGTAA
TTTTGAAGTATGGAAGCCGGAAGTGAACAAGGGCAAGTTGCTGCTTGACGCTACCTGCGCCCCGGCAGACATCCGGTATCCCACTGACCTCTCCCTTCTC
AATGAGGCCAGGGAAAAAACGGAAAAGATGATCGACACCCTGTACAATCAGGAACTCGGACTGGCCAGGAAACCCCGTACCTACCGCAAGCGGGCGAGAA
AAGACTACCTGAAGTTCGCCAGGCAGAGAAAACCGCATGTGAAGGCTATTCGTAAGGCTATCGGTAAACAACTGGGGTACCTTCGCAGAAACCTGGGCAC
AATCGATTTTCTTCTAAAGCGTGATGGCCATGGCAATTTGAGCGCCCGGCAGTCTAGAGAACTGGAAACCATTCGTATTCTCTACGCCCAGCAGCGGGAG
ATGTACCAGACAAGGACACACCGTATCGATGATCGCATAGTCAGCATCTCTCAGCCCCACGTGCGTCCCATAGTAAGGGGCAAGGCCAGGGCGGAGACCG
AGTTTGGGGCTAAAGTGGCCATTAGCATGGTTGATGGATACGCCTTCATCGATCACCTCAGCTGGGATTCCTTCAACGAAAGTCTTGGCTTAAAACAGGC
GGTCGAAGACTACAAGAAACGGTACGGTCACTATCCGGAAGCAGTCCTGGCCGACCAGTTATATCGCACCAGAGAAAACCTCTCTTTCTGCAGAAAACAT
GGCATCAGGCTGAGCGGGCCGCCGCTGGGCCGTCCATTGCTCGATGGTAGACAAGAGAAGAAAATCGCGCGCCAGGACATGAGGGAACGCAACGCTATTG
AAGGCGGTTTTGGCGTATGCAAGCGCAGATACGGCCTGGCCAGGATCATGGCACGCCTCAAAGAGACGGCAGAGAGCGTCATTGCGCTGCAGTTCCTGGT
AATGAACTTGGAACACCGGCTCCGGCTTCTTTTTTGCCATTTTATATGCGCCATCTTGAAGACTTATAAGGACCAAAATTACACTGTGTATGCGGTTATC
TAAGAGCAGTTTGTGAAATTGGAAAACTTGTTCAGCAAGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1482 bp493 aa1221603+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MYRRPTGQMVIEDFVLPFEGKLDANNRWVKLAKIIPWEQIENEYADLFPSNTGTVAKPLRMALGALIIKERCGYTDRETVEQITENPYLQYFIGLEKYQI
EPPFDPSLMVHFRKRLDQKIIKKINELICQSEKHKEQKDKDPKDKDPKDKDPGNPSGSGNFEVWKPEVNKGKLLLDATCAPADIRYPTDLSLLNEAREKT
EKMIDTLYNQELGLARKPRTYRKRARKDYLKFARQRKPHVKAIRKAIGKQLGYLRRNLGTIDFLLKRDGHGNLSARQSRELETIRILYAQQREMYQTRTH
RIDDRIVSISQPHVRPIVRGKARAETEFGAKVAISMVDGYAFIDHLSWDSFNESLGLKQAVEDYKKRYGHYPEAVLADQLYRTRENLSFCRKHGIRLSGP
PLGRPLLDGRQEKKIARQDMRERNAIEGGFGVCKRRYGLARIMARLKETAESVIALQFLVMNLEHRLRLLFCHFICAILKTYKDQNYTVYAVI

 

Blast result :
Comments
ISPeth2 is 66% aa similar to ISAcma17.
References
1] ISfinder annotation (2010)
2] Kosaka,T., Kato,S., Shimoyama,T., Ishii,S., Abe,T. and Watanabe,K.(2008) Genome Res. 18 (3), 442-448