ISUnCu10

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
EF089389 ND Uncultured marine
Uncultured Chroococcales cyanobacterium HF070 14 C03
Uncultured marine bacterium HOT0 02H05
DNA section
IS Length : 1691 bp

Ends


IR Length : 15/16

IRL : GGGTTTGCTGAATAAAAGCAAAACCCTATTCTTTAAAAGGTTACACCCAT
IRR : GGGTTTGCTGAAAAAGTTTCTCCAAAATTTATGCCACTTTTGACCAAGAA

Insertion site


Left flankDirect repeatRight flankDR Length
GGATGGAAGCTAAATAAGAAATGAGG6
CAATCTACTATAATTAACATAAGAAG6
GAAGTCATTGTAAGTGGCTCTTAAT5

DNA sequence

GGGTTTGCTGAATAAAAGCAAAACCCTATTCTTTAAAAGGTTACACCCATATTCGCGATCGCAAAAAAGATCAGCTTTGTCGGCTACAAACCGCTATAAT
TGGTAGAAACACCTCCCAGTTGTTGGTCAAGAACAAATGTATCGAAAAGAGGAGCAACCTTTACCGCCCCCAGAAAAATTTGAATTACCTTTCGAGGGCA
AATTGTCCCCCAATAATCGTTGGGTAATCATGGCAGAGTTGATACCTTGGGATGATTTTGAGGAAGAATATGCTAAACTTTTTTCAGCAGACAAAGGTGC
GCCAGCCAAACTATTTAGAATGGCATTAGGGACATTAATTATTAAGGAAAAATTAGGAACAAGTGATAGAGAAACTATAGAACAGATTAGAGAAAATCCC
TATCTACAATACTTTATAGGTTTAAATTGTTATCAACAAGAGCCACCACTGGAATCTTCAATGCTAGTTCATTTTAGGAAAAGAATTGATGGAGAATTGA
TAAACAAAATCAATAAAAAAATAGTAAAAAGAGAAATAGACAAGAGTGATAAAGAAGTAAAAAAAAAGGATTGTCTCCAAGAAAAAGGAGAAAAAATAAA
AAATAAAGGTAAACTAATTTTAGATGCGACTTGTGCGCCAGCAGACATCAAATACCCAACGGATTTAGGCATATTAAATCAAGCCAGAATTGAGACAGAA
AGAATAATAGATAATCTTTATAAACCATTAAGAGTAAAATTGAGAAAAAAGCCGAGAACTTCTAGAACAATTGCTAGAAAGGAATACTTAAAAGTAGCTA
AAAAACGAAAAGTATCTTATCAAGAAAGAAGAAAAGCTATCGGGAAACAGTTAAAATACCTTAAGAAAAATTTAGGAAATATAGAAGACTTAATTCAAGC
TGGGGCTTCCCTGGAAAATCTGAGTAAAAGACAGAAAAATTGTCTAGAGACTATCAAAAAATTTTATGAACAACAACAGTCAATGTGGGAGAATAAGACC
CAGAGTGTTCCTCAAAGAATTGTAAGTTTAACTCAACCGCATATTCGTCCAATAGTGAGGGGAAAAGCAGGAAAACCAATAGAGTTTGGAGCTAAACTCT
CAGTAAGCTGTGTAGATAACTATGTGTTTCTAGACAAAATAAGTTGGGAAAACTTCAATGAATCTTGTCATTTAAAAGAACAAGTAGAAAAGTATAAAGA
AACGTTTGGCTATTATCCCGAATCCGTCCATGTAGATAAAATTTATCGAACTAGGGAAAACAGAAATTGGTGTAAGGAAAGAGGGATAAGAATCAGTGGT
CCGAAGTTAGGAAGACCTCCGAAAAATGTCAGTGAAGAAGAAAAGAAACAATCCCACTCCGATGAATGCTTCCGTAATGCTATTGAGGGAAAGTTTGGAC
AAGCTAAACGAAGATTTAGCCTAAATCTCGTGATGACAAAACTCCCTGAAACCTCCATTACATCTATTGCTATTACATTTTTAGTTGTCAATCTTTCTAA
ACTTCTGAGGCAGTTTTTGTCGCTTTTTTTGTCCTTATTTACTAATAATAGAACAGGGGAACTCATCAAACCGCCTTTCATTAATTTTGATTATACTTTA
AACAATTTTTATGTACTAAAACTTATTGATTTGTCAGAAAATTCTTGGTCAAAAGTGGCATAAATTTTGGAGAAACTTTTTCAGCAAACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1527 bp508 aa1371663+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MYRKEEQPLPPPEKFELPFEGKLSPNNRWVIMAELIPWDDFEEEYAKLFSADKGAPAKLFRMALGTLIIKEKLGTSDRETIEQIRENPYLQYFIGLNCYQ
QEPPLESSMLVHFRKRIDGELINKINKKIVKREIDKSDKEVKKKDCLQEKGEKIKNKGKLILDATCAPADIKYPTDLGILNQARIETERIIDNLYKPLRV
KLRKKPRTSRTIARKEYLKVAKKRKVSYQERRKAIGKQLKYLKKNLGNIEDLIQAGASLENLSKRQKNCLETIKKFYEQQQSMWENKTQSVPQRIVSLTQ
PHIRPIVRGKAGKPIEFGAKLSVSCVDNYVFLDKISWENFNESCHLKEQVEKYKETFGYYPESVHVDKIYRTRENRNWCKERGIRISGPKLGRPPKNVSE
EEKKQSHSDECFRNAIEGKFGQAKRRFSLNLVMTKLPETSITSIAITFLVVNLSKLLRQFLSLFLSLFTNNRTGELIKPPFINFDYTLNNFYVLKLIDLS
ENSWSKVA

 

Blast result :
Comments
ISUnCu10 is 86% aa similar to ISCysp15.
References
1] ISfinder annotation (2010)
2] Zehr,J.P., Bench,S.R., Mondragon,E.A., McCarren,J. and DeLong,E.F. (2007) Proc. Natl. Acad. Sci. U.S.A. 104 (45), 17807-17812.