ISCph13
- Family IS5
- Group IS5
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_010831 | ND | Chlorobium phaeobacteroides | Chlorobium phaeobacteroides BS1 |
DNA section
IS Length : 1636 bp
Ends
IR Length : 15/16
IRL : GGGTTTGCTGAATAATAGTTAAATCGTTTTTAGGTAATGAATTAAGCGGC
IRR : GGGTTTGCTGAAGAATTCAAGCCATCGCCCAGCGGCACCCAATCGCCGCT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AATGATTGTT | TAATTA | ACTCTAAGTT | 6 |
| TATCCTGACC | TATTTA | AACGGTCTGG | 6 |
| CGCTCACATT | TACTATA | CAAGAGGCTG | 7 |
| GACAATTGAC | TATTTA | CTATTGGCGA | 6 |
| TTTCCCCTCG | TAAGTA | GTAGTCAATA | 6 |
| CATCAAGGAC | AAAATA | GCGCTCATCG | 6 |
| TACAGGGGAA | GAATTA | TCAAGGAGCT | 6 |
DNA sequence
GGGTTTGCTGAATAATAGTTAAATCGTTTTTAGGTAATGAATTAAGCGGCATTTTTCGTATCTTGAATGCAAGGAAAAGCCTGAAAAAGCCCCAAAAACC
TTGCACCTCGATACCGCCGATTCATGTACCAACCGAAGTTTCAGCAGCTCACGTTCGAAAATTTCCATCTGCCGTTCGGCGGTAAACTCGACCCTCAAAA
CCGTTGGGTTAAACTTGCCGAGTTGATCCCCTGGCATGTTGCAGAGAAGATGTATGCCATGAACTTCCCCTCGAAAAGAGGAGCTCCGGCACTGACGGTC
CGCATGGCGCTGGGAGCCTTGATCATCAAGGAGAAGCTCGGCCTTTCAGATATCGAAACGGTCGAACAGATCAAGGAGGGCCCGTACCTCCAGTACTTCA
TAGGGCTTGAATCGTTTCAGTATGAAGCGCCCTTCGATGCCTCGATGCTGACCCACTTCAGGAAGAGGCTGAAGCATGCCGATCTGGCGGCGCTGCAGGA
GGAACTCCTGCAACGCCATCTGGCTGAAGAGCGAAAGAGGGCTGAGGAGAAGAAAGAGAACAACGATGGCGACGACGATGGAAACGACGGACCTGCCAAT
AAAGGCAAGCTCATCGTCGATGCCACCTGTGCGCCAGCAGATATCGCCTATCCGACAGACATCGGCTTGCTGAACGATGCTCGGGAAAAGACCGAGCGGA
TGATTGACGAACTGTGTGCCATGCACCCGGAAGGAGTGAGCAAGCCGAGGACGTACCGTAAGAGGGCAAGGAAGGATTTCCTTGCCGTCGGCATGAAAAA
GAAGTTGTCGAAGAAAGCGCTCCGCAAGGGGCTTGGCAAGCAACTGCGATACCTCAGGAGAAATCTGGAGCACATTGCCAGGCTATCTGGTTCAGTGCCG
CTGACGGTCCTGTCAGCACGTTGGCATCGGGACCTGCTGGTGATCGGTGAATTGTACCGGCAGCAGCTGGAAATGTGGCAGAGCGGCAAGAAGAGCATCA
GCGACCGCATCGTCAGCATCAGCCAGCCGCACGTCAGGCCGATCGTACGGGGCAAGGCCGCAGCCAAGACAGAGTTTGGCATGAAGCTCTCGATCAGCGT
CGTCGACGGCATCAGCATGCCGGAGAGGATGAGCTGGAACGCCTACAACGAAGGCTGCGACCTGGTGCGTTCTATCGAGCGGTACCGCGAGCGATACGGG
CACTATCCAGAATCAGTGCATGCCGACAAGATCTACCGAACCCAGGCCAACCGGAGGTGGTGCAAGGAACGAGAAATTCGGTTGAGCGGCGTGCCGCTCG
GTCGGCCACCAAAGGACGTCGAGAAGAATCGGGCCCGGCGTCGGCAAATCAGGGAAGACGAAGGTATCCGCAATGCGGTTGAAGGTAAATTTGGTCAGGC
CAAACGGCGATATAGCCTGAATCGGGTGATGGCCCGTCTGGCTGAAAGCAGCCTGAGCGTGGTCTCGATCACATTCCTCGTGATGAACCTGGACCGGCTG
CTCGCCGCTCCTTTTTTGTGCCTGTTTGAATGGCTCCTTTTGGAGCTTGATGTAATCAGAAATTTGTTCGCGTGGTCATCTCCCCGAGCGGCGATTGGGT
GCCGCTGGGCGATGGCTTGAATTCTTCAGCAAACCC
TTGCACCTCGATACCGCCGATTCATGTACCAACCGAAGTTTCAGCAGCTCACGTTCGAAAATTTCCATCTGCCGTTCGGCGGTAAACTCGACCCTCAAAA
CCGTTGGGTTAAACTTGCCGAGTTGATCCCCTGGCATGTTGCAGAGAAGATGTATGCCATGAACTTCCCCTCGAAAAGAGGAGCTCCGGCACTGACGGTC
CGCATGGCGCTGGGAGCCTTGATCATCAAGGAGAAGCTCGGCCTTTCAGATATCGAAACGGTCGAACAGATCAAGGAGGGCCCGTACCTCCAGTACTTCA
TAGGGCTTGAATCGTTTCAGTATGAAGCGCCCTTCGATGCCTCGATGCTGACCCACTTCAGGAAGAGGCTGAAGCATGCCGATCTGGCGGCGCTGCAGGA
GGAACTCCTGCAACGCCATCTGGCTGAAGAGCGAAAGAGGGCTGAGGAGAAGAAAGAGAACAACGATGGCGACGACGATGGAAACGACGGACCTGCCAAT
AAAGGCAAGCTCATCGTCGATGCCACCTGTGCGCCAGCAGATATCGCCTATCCGACAGACATCGGCTTGCTGAACGATGCTCGGGAAAAGACCGAGCGGA
TGATTGACGAACTGTGTGCCATGCACCCGGAAGGAGTGAGCAAGCCGAGGACGTACCGTAAGAGGGCAAGGAAGGATTTCCTTGCCGTCGGCATGAAAAA
GAAGTTGTCGAAGAAAGCGCTCCGCAAGGGGCTTGGCAAGCAACTGCGATACCTCAGGAGAAATCTGGAGCACATTGCCAGGCTATCTGGTTCAGTGCCG
CTGACGGTCCTGTCAGCACGTTGGCATCGGGACCTGCTGGTGATCGGTGAATTGTACCGGCAGCAGCTGGAAATGTGGCAGAGCGGCAAGAAGAGCATCA
GCGACCGCATCGTCAGCATCAGCCAGCCGCACGTCAGGCCGATCGTACGGGGCAAGGCCGCAGCCAAGACAGAGTTTGGCATGAAGCTCTCGATCAGCGT
CGTCGACGGCATCAGCATGCCGGAGAGGATGAGCTGGAACGCCTACAACGAAGGCTGCGACCTGGTGCGTTCTATCGAGCGGTACCGCGAGCGATACGGG
CACTATCCAGAATCAGTGCATGCCGACAAGATCTACCGAACCCAGGCCAACCGGAGGTGGTGCAAGGAACGAGAAATTCGGTTGAGCGGCGTGCCGCTCG
GTCGGCCACCAAAGGACGTCGAGAAGAATCGGGCCCGGCGTCGGCAAATCAGGGAAGACGAAGGTATCCGCAATGCGGTTGAAGGTAAATTTGGTCAGGC
CAAACGGCGATATAGCCTGAATCGGGTGATGGCCCGTCTGGCTGAAAGCAGCCTGAGCGTGGTCTCGATCACATTCCTCGTGATGAACCTGGACCGGCTG
CTCGCCGCTCCTTTTTTGTGCCTGTTTGAATGGCTCCTTTTGGAGCTTGATGTAATCAGAAATTTGTTCGCGTGGTCATCTCCCCGAGCGGCGATTGGGT
GCCGCTGGGCGATGGCTTGAATTCTTCAGCAAACCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1497 bp | 498 aa | 124 | 1620 | + | No |
Chemistry : DDE
ORF sequence :
MYQPKFQQLTFENFHLPFGGKLDPQNRWVKLAELIPWHVAEKMYAMNFPSKRGAPALTVRMALGALIIKEKLGLSDIETVEQIKEGPYLQYFIGLESFQY
EAPFDASMLTHFRKRLKHADLAALQEELLQRHLAEERKRAEEKKENNDGDDDGNDGPANKGKLIVDATCAPADIAYPTDIGLLNDAREKTERMIDELCAM
HPEGVSKPRTYRKRARKDFLAVGMKKKLSKKALRKGLGKQLRYLRRNLEHIARLSGSVPLTVLSARWHRDLLVIGELYRQQLEMWQSGKKSISDRIVSIS
QPHVRPIVRGKAAAKTEFGMKLSISVVDGISMPERMSWNAYNEGCDLVRSIERYRERYGHYPESVHADKIYRTQANRRWCKEREIRLSGVPLGRPPKDVE
KNRARRRQIREDEGIRNAVEGKFGQAKRRYSLNRVMARLAESSLSVVSITFLVMNLDRLLAAPFLCLFEWLLLELDVIRNLFAWSSPRAAIGCRWAMA
EAPFDASMLTHFRKRLKHADLAALQEELLQRHLAEERKRAEEKKENNDGDDDGNDGPANKGKLIVDATCAPADIAYPTDIGLLNDAREKTERMIDELCAM
HPEGVSKPRTYRKRARKDFLAVGMKKKLSKKALRKGLGKQLRYLRRNLEHIARLSGSVPLTVLSARWHRDLLVIGELYRQQLEMWQSGKKSISDRIVSIS
QPHVRPIVRGKAAAKTEFGMKLSISVVDGISMPERMSWNAYNEGCDLVRSIERYRERYGHYPESVHADKIYRTQANRRWCKEREIRLSGVPLGRPPKDVE
KNRARRRQIREDEGIRNAVEGKFGQAKRRYSLNRVMARLAESSLSVVSITFLVMNLDRLLAAPFLCLFEWLLLELDVIRNLFAWSSPRAAIGCRWAMA
Blast result :
Comments
ISCph13 is 95% aa similar to ISCph12.
References
1] ISfinder annotation (2010)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Li,T., Liu,Z., Zhao,F., Overmann,J., Bryant,D.A. and Richardson,P. (2008) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Li,T., Liu,Z., Zhao,F., Overmann,J., Bryant,D.A. and Richardson,P. (2008) Direct submission GenBank.