ISCph12
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010831 | ND | Chlorobium phaeobacteroides | Chlorobium phaeobacteroides BS1 |
DNA section
IS Length : 1635 bp
Ends
IR Length : 15/16
IRL : GGGTTTGCTGAATAATAGCTAAATCGTTTTATGGCAAATGATTAAGCGTT
IRR : GGGTTTGCTGAAGAATTCAAGCCATCGCCCCGCGGCACCCAATCGCCGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCCTCGACACTGCCAGTTA | TAATTGCCGAAATTTG | 0 |
DNA sequence
GGGTTTGCTGAATAATAGCTAAATCGTTTTATGGCAAATGATTAAGCGTTATTTTTTGTAACTTGTATGCAAGGAAAAGCCTGAAAAAGCCCCAAAACCT
TTGCACCTCGATACCGCGATTCATGTACCAACAGAAGTTTCAGCAGCTCACGTTCGAAAATTTCCATCTGCCGTTCGGCGGTAAACTCGATCCGGAAAAC
CGGTGGGTGAGGCTCGCTGACGTAATTCCCTGGCACGTCGCCGAAACGATGTATGCCAAAAACTTCATGTCAAAACGGGGTGCTCCGGCACTGACGGTTC
GTATGGCGCTGGGGTCTTTGATCATCAAGGAGAAACTCGGCCTTTCGGATATCGAGACGGTCGAACAGATCAAGGAGAACCCGTATCTCCAGTACTTCAT
CGGTCTTGAATCGTTTCAGCATATCGCGCCCTTCGACGCCTCGATGCTGACCCACTTCCGGAAGAGGCTGAAGCATACCGATCTCGGTGCGCTGCAGGAG
GAACTCCTGCAACGCCATCTGGCTGAAGAGCGAAAGAGGGCTGAGGAGAAGAAAGAGAACCAGAATGGCGACGACGATGGAAACGAGGGTCCTGCCAATA
AAGGCAAGCTCATCGTCGATGCCACTTGTGCGCCAGCAGATATCGCCTATCCGACAGATATCGGCTTGCTGAACGATGCTCGGGAAAAGACCGAGCGGAT
CATTGACGAACTGTATGCCATGCACCCGGAAGGAGTGAGCAAGCCGAGGACGTACCGTAAGAGGGCAAGGAAGGATTTTCTTGCCCTCGGCATGAAAAAG
AAGTTGTCGAAGAAAGCGCTCCGCAAGGGGCTTGGCAAGCAACTGCGATACCTCAGGAGAAATCTGGAGCACATTGCCATGCTATCTGGTTCAGTGCCGC
TGACGGTCCTGTCAGCACGTTGGCATCGGGACCTGCTGGTGATCGGTGAATTGTACCGGCAGCAGGTGGAAATGTGGCAGAGCGGCAAGAAGAACATCAG
CGACCGCATCGTCAGCATCAGCCAGCCGCACGTCAGGCCGATCGTACGGGGCAAGGCCGCAGCCAAGACAGAGTTTGGCATGAAGCTCTCGATCAGCGTC
GTCGACGGCATCAGCATGCCGGAGAGGATGAGCTGGAACGCCTACAACGAAGGCTGCGATCTGGTGCGAGACATCGAGCGGTACCGTGAGCGATACGGCC
ACTATCCTGAATCGGTCCATGCCGACAAGATCTACCGGACGCTGGCCAACCGGATGTGGTGCAAGGCTCGAGGGATCCGGCTGAGCGGCGTGCCGCTCGG
TCGGCCCCCGAAAGACGTTGAGAAGAACCGGGCCCGCCGGCGCCAGATTAGGGAAGACGAAGGCATCAGGAATGCAGTTGAAGGCAAGTTCGGCCAAGCG
AAGCGCCGATACGGACTGGGCCGGGTGATGGCCAGGCTGGCTGAAAGCAGCCTGAGCGCGGTCTCAATCACATTCCTCGTGATGAATCTGGACCGGGTGC
TCGCCGCTCCTTTTTTGTGCCTGTTTGAATGGCTCTTTTTGGAGCTTGACGTAATCAGAAATTTGTTCGCGTGGTCATCTCCCCGAGCGGCGATTGGGTG
CCGCGGGGCGATGGCTTGAATTCTTCAGCAAACCC
TTGCACCTCGATACCGCGATTCATGTACCAACAGAAGTTTCAGCAGCTCACGTTCGAAAATTTCCATCTGCCGTTCGGCGGTAAACTCGATCCGGAAAAC
CGGTGGGTGAGGCTCGCTGACGTAATTCCCTGGCACGTCGCCGAAACGATGTATGCCAAAAACTTCATGTCAAAACGGGGTGCTCCGGCACTGACGGTTC
GTATGGCGCTGGGGTCTTTGATCATCAAGGAGAAACTCGGCCTTTCGGATATCGAGACGGTCGAACAGATCAAGGAGAACCCGTATCTCCAGTACTTCAT
CGGTCTTGAATCGTTTCAGCATATCGCGCCCTTCGACGCCTCGATGCTGACCCACTTCCGGAAGAGGCTGAAGCATACCGATCTCGGTGCGCTGCAGGAG
GAACTCCTGCAACGCCATCTGGCTGAAGAGCGAAAGAGGGCTGAGGAGAAGAAAGAGAACCAGAATGGCGACGACGATGGAAACGAGGGTCCTGCCAATA
AAGGCAAGCTCATCGTCGATGCCACTTGTGCGCCAGCAGATATCGCCTATCCGACAGATATCGGCTTGCTGAACGATGCTCGGGAAAAGACCGAGCGGAT
CATTGACGAACTGTATGCCATGCACCCGGAAGGAGTGAGCAAGCCGAGGACGTACCGTAAGAGGGCAAGGAAGGATTTTCTTGCCCTCGGCATGAAAAAG
AAGTTGTCGAAGAAAGCGCTCCGCAAGGGGCTTGGCAAGCAACTGCGATACCTCAGGAGAAATCTGGAGCACATTGCCATGCTATCTGGTTCAGTGCCGC
TGACGGTCCTGTCAGCACGTTGGCATCGGGACCTGCTGGTGATCGGTGAATTGTACCGGCAGCAGGTGGAAATGTGGCAGAGCGGCAAGAAGAACATCAG
CGACCGCATCGTCAGCATCAGCCAGCCGCACGTCAGGCCGATCGTACGGGGCAAGGCCGCAGCCAAGACAGAGTTTGGCATGAAGCTCTCGATCAGCGTC
GTCGACGGCATCAGCATGCCGGAGAGGATGAGCTGGAACGCCTACAACGAAGGCTGCGATCTGGTGCGAGACATCGAGCGGTACCGTGAGCGATACGGCC
ACTATCCTGAATCGGTCCATGCCGACAAGATCTACCGGACGCTGGCCAACCGGATGTGGTGCAAGGCTCGAGGGATCCGGCTGAGCGGCGTGCCGCTCGG
TCGGCCCCCGAAAGACGTTGAGAAGAACCGGGCCCGCCGGCGCCAGATTAGGGAAGACGAAGGCATCAGGAATGCAGTTGAAGGCAAGTTCGGCCAAGCG
AAGCGCCGATACGGACTGGGCCGGGTGATGGCCAGGCTGGCTGAAAGCAGCCTGAGCGCGGTCTCAATCACATTCCTCGTGATGAATCTGGACCGGGTGC
TCGCCGCTCCTTTTTTGTGCCTGTTTGAATGGCTCTTTTTGGAGCTTGACGTAATCAGAAATTTGTTCGCGTGGTCATCTCCCCGAGCGGCGATTGGGTG
CCGCGGGGCGATGGCTTGAATTCTTCAGCAAACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1496 bp | 498 aa | 124 | 1619 | + | No |
Chemistry : DDE
ORF sequence :
MYQQKFQQLTFENFHLPFGGKLDPENRWVRLADVIPWHVAETMYAKNFMSKRGAPALTVRMALGSLIIKEKLGLSDIETVEQIKENPYLQYFIGLESFQH
IAPFDASMLTHFRKRLKHTDLGALQEELLQRHLAEERKRAEEKKENQNGDDDGNEGPANKGKLIVDATCAPADIAYPTDIGLLNDAREKTERIIDELYAM
HPEGVSKPRTYRKRARKDFLALGMKKKLSKKALRKGLGKQLRYLRRNLEHIAMLSGSVPLTVLSARWHRDLLVIGELYRQQVEMWQSGKKNISDRIVSIS
QPHVRPIVRGKAAAKTEFGMKLSISVVDGISMPERMSWNAYNEGCDLVRDIERYRERYGHYPESVHADKIYRTLANRMWCKARGIRLSGVPLGRPPKDVE
KNRARRRQIREDEGIRNAVEGKFGQAKRRYGLGRVMARLAESSLSAVSITFLVMNLDRVLAAPFLCLFEWLFLELDVIRNLFAWSSPRAAIGCRGAMA
IAPFDASMLTHFRKRLKHTDLGALQEELLQRHLAEERKRAEEKKENQNGDDDGNEGPANKGKLIVDATCAPADIAYPTDIGLLNDAREKTERIIDELYAM
HPEGVSKPRTYRKRARKDFLALGMKKKLSKKALRKGLGKQLRYLRRNLEHIAMLSGSVPLTVLSARWHRDLLVIGELYRQQVEMWQSGKKNISDRIVSIS
QPHVRPIVRGKAAAKTEFGMKLSISVVDGISMPERMSWNAYNEGCDLVRDIERYRERYGHYPESVHADKIYRTLANRMWCKARGIRLSGVPLGRPPKDVE
KNRARRRQIREDEGIRNAVEGKFGQAKRRYGLGRVMARLAESSLSAVSITFLVMNLDRVLAAPFLCLFEWLFLELDVIRNLFAWSSPRAAIGCRGAMA
Blast result :
Comments
ISCph12 is 70% aa similar to ISAcma17.
References
1] ISfinder annotation (2010)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Li,T., Liu,Z., Zhao,F., Overmann,J., Bryant,D.A. and Richardson,P. (2008) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Li,T., Liu,Z., Zhao,F., Overmann,J., Bryant,D.A. and Richardson,P. (2008) Direct submission GenBank.