ISCph12

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010831 ND Chlorobium phaeobacteroides
Chlorobium phaeobacteroides BS1
DNA section
IS Length : 1635 bp

Ends


IR Length : 15/16

IRL : GGGTTTGCTGAATAATAGCTAAATCGTTTTATGGCAAATGATTAAGCGTT
IRR : GGGTTTGCTGAAGAATTCAAGCCATCGCCCCGCGGCACCCAATCGCCGCT

Insertion site


Left flankDirect repeatRight flankDR Length
GCCTCGACACTGCCAGTTATAATTGCCGAAATTTG0

DNA sequence

GGGTTTGCTGAATAATAGCTAAATCGTTTTATGGCAAATGATTAAGCGTTATTTTTTGTAACTTGTATGCAAGGAAAAGCCTGAAAAAGCCCCAAAACCT
TTGCACCTCGATACCGCGATTCATGTACCAACAGAAGTTTCAGCAGCTCACGTTCGAAAATTTCCATCTGCCGTTCGGCGGTAAACTCGATCCGGAAAAC
CGGTGGGTGAGGCTCGCTGACGTAATTCCCTGGCACGTCGCCGAAACGATGTATGCCAAAAACTTCATGTCAAAACGGGGTGCTCCGGCACTGACGGTTC
GTATGGCGCTGGGGTCTTTGATCATCAAGGAGAAACTCGGCCTTTCGGATATCGAGACGGTCGAACAGATCAAGGAGAACCCGTATCTCCAGTACTTCAT
CGGTCTTGAATCGTTTCAGCATATCGCGCCCTTCGACGCCTCGATGCTGACCCACTTCCGGAAGAGGCTGAAGCATACCGATCTCGGTGCGCTGCAGGAG
GAACTCCTGCAACGCCATCTGGCTGAAGAGCGAAAGAGGGCTGAGGAGAAGAAAGAGAACCAGAATGGCGACGACGATGGAAACGAGGGTCCTGCCAATA
AAGGCAAGCTCATCGTCGATGCCACTTGTGCGCCAGCAGATATCGCCTATCCGACAGATATCGGCTTGCTGAACGATGCTCGGGAAAAGACCGAGCGGAT
CATTGACGAACTGTATGCCATGCACCCGGAAGGAGTGAGCAAGCCGAGGACGTACCGTAAGAGGGCAAGGAAGGATTTTCTTGCCCTCGGCATGAAAAAG
AAGTTGTCGAAGAAAGCGCTCCGCAAGGGGCTTGGCAAGCAACTGCGATACCTCAGGAGAAATCTGGAGCACATTGCCATGCTATCTGGTTCAGTGCCGC
TGACGGTCCTGTCAGCACGTTGGCATCGGGACCTGCTGGTGATCGGTGAATTGTACCGGCAGCAGGTGGAAATGTGGCAGAGCGGCAAGAAGAACATCAG
CGACCGCATCGTCAGCATCAGCCAGCCGCACGTCAGGCCGATCGTACGGGGCAAGGCCGCAGCCAAGACAGAGTTTGGCATGAAGCTCTCGATCAGCGTC
GTCGACGGCATCAGCATGCCGGAGAGGATGAGCTGGAACGCCTACAACGAAGGCTGCGATCTGGTGCGAGACATCGAGCGGTACCGTGAGCGATACGGCC
ACTATCCTGAATCGGTCCATGCCGACAAGATCTACCGGACGCTGGCCAACCGGATGTGGTGCAAGGCTCGAGGGATCCGGCTGAGCGGCGTGCCGCTCGG
TCGGCCCCCGAAAGACGTTGAGAAGAACCGGGCCCGCCGGCGCCAGATTAGGGAAGACGAAGGCATCAGGAATGCAGTTGAAGGCAAGTTCGGCCAAGCG
AAGCGCCGATACGGACTGGGCCGGGTGATGGCCAGGCTGGCTGAAAGCAGCCTGAGCGCGGTCTCAATCACATTCCTCGTGATGAATCTGGACCGGGTGC
TCGCCGCTCCTTTTTTGTGCCTGTTTGAATGGCTCTTTTTGGAGCTTGACGTAATCAGAAATTTGTTCGCGTGGTCATCTCCCCGAGCGGCGATTGGGTG
CCGCGGGGCGATGGCTTGAATTCTTCAGCAAACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1496 bp498 aa1241619+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MYQQKFQQLTFENFHLPFGGKLDPENRWVRLADVIPWHVAETMYAKNFMSKRGAPALTVRMALGSLIIKEKLGLSDIETVEQIKENPYLQYFIGLESFQH
IAPFDASMLTHFRKRLKHTDLGALQEELLQRHLAEERKRAEEKKENQNGDDDGNEGPANKGKLIVDATCAPADIAYPTDIGLLNDAREKTERIIDELYAM
HPEGVSKPRTYRKRARKDFLALGMKKKLSKKALRKGLGKQLRYLRRNLEHIAMLSGSVPLTVLSARWHRDLLVIGELYRQQVEMWQSGKKNISDRIVSIS
QPHVRPIVRGKAAAKTEFGMKLSISVVDGISMPERMSWNAYNEGCDLVRDIERYRERYGHYPESVHADKIYRTLANRMWCKARGIRLSGVPLGRPPKDVE
KNRARRRQIREDEGIRNAVEGKFGQAKRRYGLGRVMARLAESSLSAVSITFLVMNLDRVLAAPFLCLFEWLFLELDVIRNLFAWSSPRAAIGCRGAMA

 

Blast result :
Comments
ISCph12 is 70% aa similar to ISAcma17.
References
1] ISfinder annotation (2010)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Li,T., Liu,Z., Zhao,F., Overmann,J., Bryant,D.A. and Richardson,P. (2008) Direct submission GenBank.