ISCysp15
- Family IS5
- Group IS5
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011726 | ND | Cyanothece sp. | Cyanothece sp. PCC 8801 |
DNA section
IS Length : 1690 bp
Ends
IR Length : 15/16
IRL : GGGTTTGCTGAATAAGAACAAAAGCCTGATTAAATAAAGGTTACAGAGAC
IRR : GGGTTTGCTGAAAAAGTCTCTTCAGAAATTATGCTGCCAAGTGCCAATTA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGATGAAAAA | TAGTTA | GTTTCTCCTT | 6 |
DNA sequence
GGGTTTGCTGAATAAGAACAAAAGCCTGATTAAATAAAGGTTACAGAGACATTCAGCTTAGAAAAAAGAGCAGACACAGAGGCTAAAAACCGCTAAAATT
GGTAAAAACACCTCGCCGTTCTTTAGTTAGAACAAATGTATCGCCAAGAGAAGCAGCTTTTACTGCCCCCAGAAAATTTTGCCTTACCGTTTGAAGGAAA
ATTATCCCCAAATAATCGTTGGGTAATCATGGCTTCCTTGATACCTTGGGAAGATTTTGAAGAAGAATATGCTAAACTTTTTGACTCAGAAAAGGGCGCA
CCAGCTAAACCATTTAGAATGGCATTAGGAACATTAATTATTAAAGAAAAGCTCGGAACAAGTGACAGAGAAACTATAGAACAAATAACCGAGAATCCTT
ACTTACAATACTTTATTGGGTTAAATTCCTATCAACAAGAGCCACCTGTCGATGCGTCAATGCTAGTCCATTTTAGAAAGCGAATTAGTGTAGAATTAGT
CAATAAAATCAATCAAGAAATTGTTAAGAGAGAAAAAGACAAGCTAGACTCTCAAGTAAAAAAAAAGGGTTTGCGCCCAGAACAAAGAGAAAAAATAACA
AATCAAGGTAAACTAATCTTAGATGCAACTTGTGCGCCTGCCGATATCAGATACCCAACAGATTTAGGGATATTAAATCAAGCTAGAATTGAAACAGAAA
AAATAATAAATGCTCTTTATAAGCCCTTAAGAGGAAAACAAATAAATAAACCTAGAACTTGTCGTCGGATAGCGAAAAAAGAATATTTAAAAGTGGCTAA
AAAACGCCAACCCTCTTATCAAGAAAGAAGAGAAGCAATTGGAAAACAACTCAAATATGTTAAGAAAAATTTAGGACAGATTGAACAACTAATCAAGGCA
GGTGCTGACCTAAAAAAACTGAGTAACAGACGGCAAAATCTTCTGAATACTGTAAAAAAAGTTTATGAACAACAGCAGCAAATGTGGGACGATAAAACTC
AAAGTGTCCCGCAAAGAATTGTTAGTTTGACTCAACCTCATGTTCGCCCCATTGTTAGAGGGAAAGCTGGAAAACCTGTTGAATTTGGGGCAAAGCTCTC
GGTTAGTTGTGTTGATAACTATGTTTTTTTAGACCGAATTAGTTGGGAAAATTTTAATGAATCTTGTGATTTAAAGGAACAAGTTGAAAAGTATAGAAAA
ACTTTTGGCTATTATCCTGAATCAGTCCATGTCGATAGAATTTATCGAACCAGAGAAAATCGAGCATGGTGCAAAGCAAGAGGAATTAGGATTAGTGGAC
CCCAGTTAGGAAGACCTCCCAAAAATATTAGTAAACAAGAGAAAAAACAAGCCTTAGATGATGAATGTTTCCGCAATGCTATTGAAGGAAAATTTGGACA
AGCTAAACGAAGATTTAGCCTCAAATTGGTGATGACTAAATTACCTGAAACTTCAGAAACTTCAATAGCTATTACTTTTTTAGTAGTGAATCTTGGCCGA
CTGCTTCGGCAGTTTTTGTCGCTTTTTTTGTGTTTTTTGATAAATCCTAGAACAAAAGAACTAAACCAGCGATTCTTCTTTAAGAAAAGTTATATCAAAA
ATAATTTGGACTCAGTAAAACTTATCAATAAGTCAGTCAATAATTGGCACTTGGCAGCATAATTTCTGAAGAGACTTTTTCAGCAAACCC
GGTAAAAACACCTCGCCGTTCTTTAGTTAGAACAAATGTATCGCCAAGAGAAGCAGCTTTTACTGCCCCCAGAAAATTTTGCCTTACCGTTTGAAGGAAA
ATTATCCCCAAATAATCGTTGGGTAATCATGGCTTCCTTGATACCTTGGGAAGATTTTGAAGAAGAATATGCTAAACTTTTTGACTCAGAAAAGGGCGCA
CCAGCTAAACCATTTAGAATGGCATTAGGAACATTAATTATTAAAGAAAAGCTCGGAACAAGTGACAGAGAAACTATAGAACAAATAACCGAGAATCCTT
ACTTACAATACTTTATTGGGTTAAATTCCTATCAACAAGAGCCACCTGTCGATGCGTCAATGCTAGTCCATTTTAGAAAGCGAATTAGTGTAGAATTAGT
CAATAAAATCAATCAAGAAATTGTTAAGAGAGAAAAAGACAAGCTAGACTCTCAAGTAAAAAAAAAGGGTTTGCGCCCAGAACAAAGAGAAAAAATAACA
AATCAAGGTAAACTAATCTTAGATGCAACTTGTGCGCCTGCCGATATCAGATACCCAACAGATTTAGGGATATTAAATCAAGCTAGAATTGAAACAGAAA
AAATAATAAATGCTCTTTATAAGCCCTTAAGAGGAAAACAAATAAATAAACCTAGAACTTGTCGTCGGATAGCGAAAAAAGAATATTTAAAAGTGGCTAA
AAAACGCCAACCCTCTTATCAAGAAAGAAGAGAAGCAATTGGAAAACAACTCAAATATGTTAAGAAAAATTTAGGACAGATTGAACAACTAATCAAGGCA
GGTGCTGACCTAAAAAAACTGAGTAACAGACGGCAAAATCTTCTGAATACTGTAAAAAAAGTTTATGAACAACAGCAGCAAATGTGGGACGATAAAACTC
AAAGTGTCCCGCAAAGAATTGTTAGTTTGACTCAACCTCATGTTCGCCCCATTGTTAGAGGGAAAGCTGGAAAACCTGTTGAATTTGGGGCAAAGCTCTC
GGTTAGTTGTGTTGATAACTATGTTTTTTTAGACCGAATTAGTTGGGAAAATTTTAATGAATCTTGTGATTTAAAGGAACAAGTTGAAAAGTATAGAAAA
ACTTTTGGCTATTATCCTGAATCAGTCCATGTCGATAGAATTTATCGAACCAGAGAAAATCGAGCATGGTGCAAAGCAAGAGGAATTAGGATTAGTGGAC
CCCAGTTAGGAAGACCTCCCAAAAATATTAGTAAACAAGAGAAAAAACAAGCCTTAGATGATGAATGTTTCCGCAATGCTATTGAAGGAAAATTTGGACA
AGCTAAACGAAGATTTAGCCTCAAATTGGTGATGACTAAATTACCTGAAACTTCAGAAACTTCAATAGCTATTACTTTTTTAGTAGTGAATCTTGGCCGA
CTGCTTCGGCAGTTTTTGTCGCTTTTTTTGTGTTTTTTGATAAATCCTAGAACAAAAGAACTAAACCAGCGATTCTTCTTTAAGAAAAGTTATATCAAAA
ATAATTTGGACTCAGTAAAACTTATCAATAAGTCAGTCAATAATTGGCACTTGGCAGCATAATTTCTGAAGAGACTTTTTCAGCAAACCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1527 bp | 508 aa | 136 | 1662 | + | No |
Chemistry : DDE
ORF sequence :
MYRQEKQLLLPPENFALPFEGKLSPNNRWVIMASLIPWEDFEEEYAKLFDSEKGAPAKPFRMALGTLIIKEKLGTSDRETIEQITENPYLQYFIGLNSYQ
QEPPVDASMLVHFRKRISVELVNKINQEIVKREKDKLDSQVKKKGLRPEQREKITNQGKLILDATCAPADIRYPTDLGILNQARIETEKIINALYKPLRG
KQINKPRTCRRIAKKEYLKVAKKRQPSYQERREAIGKQLKYVKKNLGQIEQLIKAGADLKKLSNRRQNLLNTVKKVYEQQQQMWDDKTQSVPQRIVSLTQ
PHVRPIVRGKAGKPVEFGAKLSVSCVDNYVFLDRISWENFNESCDLKEQVEKYRKTFGYYPESVHVDRIYRTRENRAWCKARGIRISGPQLGRPPKNISK
QEKKQALDDECFRNAIEGKFGQAKRRFSLKLVMTKLPETSETSIAITFLVVNLGRLLRQFLSLFLCFLINPRTKELNQRFFFKKSYIKNNLDSVKLINKS
VNNWHLAA
QEPPVDASMLVHFRKRISVELVNKINQEIVKREKDKLDSQVKKKGLRPEQREKITNQGKLILDATCAPADIRYPTDLGILNQARIETEKIINALYKPLRG
KQINKPRTCRRIAKKEYLKVAKKRQPSYQERREAIGKQLKYVKKNLGQIEQLIKAGADLKKLSNRRQNLLNTVKKVYEQQQQMWDDKTQSVPQRIVSLTQ
PHVRPIVRGKAGKPVEFGAKLSVSCVDNYVFLDRISWENFNESCDLKEQVEKYRKTFGYYPESVHVDRIYRTRENRAWCKARGIRISGPQLGRPPKNISK
QEKKQALDDECFRNAIEGKFGQAKRRFSLKLVMTKLPETSETSIAITFLVVNLGRLLRQFLSLFLCFLINPRTKELNQRFFFKKSYIKNNLDSVKLINKS
VNNWHLAA
Blast result :
Comments
ISCysp15 is 69% aa similar to ISAcma17.
References
1] ISfinder annotation (2010)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Liberton,M., Stoeckel,J., Banerjee,A., Singh,A., Page,L., Sato,H., Zhao,L., Sherman,L., Pakrasi,H. and Richardson,P. (2008) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Liberton,M., Stoeckel,J., Banerjee,A., Singh,A., Page,L., Sato,H., Zhao,L., Sherman,L., Pakrasi,H. and Richardson,P. (2008) Direct submission GenBank.