ISMae6

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010296 ND Microcystis aeruginosa
Microcystis aeruginosa NIES-843
DNA section
IS Length : 1682 bp

Ends


IR Length : 16/18

IRL : GGGTTTGCTGAATAAATCTAAAAACCTTACAGGAAAGGGCTTTTAGCTTG
IRR : GGGTTTGCTGAAAAAGTCATTGAAAAGTACAGGTCTCTTAATCAATGATT

Insertion site


Left flankDirect repeatRight flankDR Length
GATTGTTAAGTAGGTAGGCGTTAAAA6
ATCAAAAAAATATTTAGAATCCCTCC6
AGTGATGAGTTAGGTAGTTATCCAGT6
TCCATAGGGCTAATTACAAACTGAGC6
GACAGTAGCCTAGTTACTCAGGAGCC6
TGGCAACCCCTAAATAGCGAGACCGC6
GAATCAACCCTACTATAGACCTCTTGC7

DNA sequence

GGGTTTGCTGAATAAATCTAAAAACCTTACAGGAAAGGGCTTTTAGCTTGATTGAGAGCTTCCCAAATGCACTTAAATCTGCTAGAATCTCTTAAAACCC
TTGCATCACCCTTGCATCTTCTCTAATTAGTGCTAATGTACCGTAAAAGCGAGTTACCCTCAACCCCACCAGAAAACTTCGAGCTGCCCTTTGAGGGGAA
ATTATCCCAAGATAATCGTTGGGTAATTATGGCCAACCTCATTCCCTGGTCAGAATTTGAAGCGGAATACGCATCACTTTTTTCAGAAGAAATGGGCGCA
CCCGCCAAAACATTTAGGACAGCACTAGGAGCATTAATTATTAAAGAAAAATTAGGAACAAGCGATAGAGAAACGGTAGAACAAATCAAGGAAAATCCTT
ATTTACAATACTTCTTGGGGTTTTCAGCCTACAGCAATGAACCCCAGTTTGAAGCGTCAATGTTGGTTCACTTTCGAGAAAGAATCACTCGGGAACTAAT
TAATAAAGTGAATCGCTTTATGGTCAAAAATTCGAGAGAAATAAAAGAAGAAGAAAACACCGAAAAAAAGTTAGAGAGCGAAACCCAAAGTCAACCAGAA
AATCGAGGTAAATTAATTTTAGATGCCAGTTGTGCGCCCGCAGATATTAGTTATCCTACGGATTTAAACCTGTTAAATCAAGGAAGAAAACAAACCGAAA
AAATTATTGATATTCTCTATGAAACTATAAAAGGAAAACTTGTTCAAAAACCGAGAACCTATCGTCTCCTGGCCAGAAAAAGTTATTTAGAAGTAGCAAA
AAAAAGAAAACCTACCGTCAAACAAAGACGAAAAGCTCTAAAAAGACAACTGCAATATCTGAAAAGAAATCTCGACCATATTGAACAACTTTTAGCAGAA
GGAGCCTCTCTACAAAGCTTGAAAAAAAGAGACTATAAACTGTTATTAGTAGTCACAGAAGTTTATCGCCAACAACTCTGGATGTACCAAAATAACAAAC
AGAGTATTGAAGACAGAATTGTCAGCTTAACTCAACCCCACATCCGTCCGATAGTCAGAGGAAAAGCTGGAAAACCCGTAGAATTTGGGGCCAAATTCTC
AGCAAGCTGTATAGATGGTTACATATTTTTAGACCGGATTAGTTGGGATAACTTTAATGAATCGGGAGATTTAAAAGCACAAATAGAAGCTTATTATGAC
TATACAGGATACTATCCAGAATCAGTTCATGTGGACAAAATTTATCGAACCAGAGAAAACCGAGCTTGGTGTAAAGAAAGGGGAATCAGAATCAGTGGTC
CCCCATTAGGAAGACCAGCCAAAAATGTTAGTAAAGAACAAAAGAAACAAGCTACTGATGATGAGAGGATTCGGAATTGTATAGAGGGCAAATTTGGACA
AGGGAAAAGAAGATTTAGCTTAGGTAAAGTGATGGCTAAACTTCCTCATACTTCCTTTTCAGCGATTGCTATTACTTTTTTAGTCATGAATCTTTCTAAC
CTGTTGAGGCAGGTTTTTTGGGCTTTTTTATGTCTGAAATGGAAAAACAGCACTTTTTCTCGGTCAATGATTAGGATAAGTTATAATTTAAAAATTAATC
AACAACTAAAGCTTATGCTTGTAGCTAAGTGAAATCATTGATTAAGAGACCTGTACTTTTCAATGACTTTTTCAGCAAACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1497 bp498 aa1361632+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MYRKSELPSTPPENFELPFEGKLSQDNRWVIMANLIPWSEFEAEYASLFSEEMGAPAKTFRTALGALIIKEKLGTSDRETVEQIKENPYLQYFLGFSAYS
NEPQFEASMLVHFRERITRELINKVNRFMVKNSREIKEEENTEKKLESETQSQPENRGKLILDASCAPADISYPTDLNLLNQGRKQTEKIIDILYETIKG
KLVQKPRTYRLLARKSYLEVAKKRKPTVKQRRKALKRQLQYLKRNLDHIEQLLAEGASLQSLKKRDYKLLLVVTEVYRQQLWMYQNNKQSIEDRIVSLTQ
PHIRPIVRGKAGKPVEFGAKFSASCIDGYIFLDRISWDNFNESGDLKAQIEAYYDYTGYYPESVHVDKIYRTRENRAWCKERGIRISGPPLGRPAKNVSK
EQKKQATDDERIRNCIEGKFGQGKRRFSLGKVMAKLPHTSFSAIAITFLVMNLSNLLRQVFWAFLCLKWKNSTFSRSMIRISYNLKINQQLKLMLVAK

 

Blast result :
Comments
ISMae6 is 71% aa similar to ISAcma17.
References
1] ISfinder annnotation (2010)
2] Kaneko,T., Nakajima,N., Okamoto,S., Suzuki,I., Tanabe,Y., Tamaoki,M., Nakamura,Y., Kasai,F., Watanabe,A., Kawashima,K., Kishida,Y., Ono,A., Shimizu,Y., Takahashi,C., Minami,C., Fujishiro,T., Kohara,M., Katoh,M., Nakazaki,N., Nakayama,S., Yamada,M., Tabata,S. and Watanabe,M.M. (2007) DNA Res. 14 (6), 247-256.