ISMaq6
- Family IS5
- Group IS5
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008740 | ND | Marinobacter aquaeolei | Marinobacter aquaeolei VT8 |
DNA section
IS Length : 1519 bp
Ends
IR Length : 15
IRL : GTCGCCCCTGCAAAAGTAAAAACCTGAACAAAGGCAATGAGTTGGCCTGA
IRR : GTCGCCCCTGCAAAAACGCCGTTTTCAGACAGCCAGCAATTTACCGGTCT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGAGATATCTAC | AAAGTA | GTTAACACCA | 6 |
DNA sequence
GTCGCCCCTGCAAAAGTAAAAACCTGAACAAAGGCAATGAGTTGGCCTGACTTCGGGGTATAATATCCATCATAAATCTCCCCGTTTCGTCCAAAAACCG
GAAGAAAGCCCTATGATCCCACGGGATAAGCGCCAGGCACCACAGCGAGATCTGCTGGAAACCTACCTCGAAGACATCCTCAACCCCCGGCACGAACTGG
TGCAGATGGGTAAACGGATCGACTGGACCGCCTGCGAACAACATTTTGGTCAGTTGTACGCGGTGCAAGCCGGGCGTCCGGGACTGCCCATCCGGTTACA
CGTGGGCTTGCAGTTGCTCAAGCACATGTATGCGCTGTCAGACCGTGATGTTCTGGATCGCTGGGTAGAGAACCCCTACTGGCAACACTTCTGCGGCGAA
GTGATCTTCCAACACCGGCTGCCCATGGACGAAACCACCATGATGCGGTTCCGGCACCGCATTGGCGAAGGCGGTGCCTGTGAGCTTCTCAAAATGAGCA
TTGCCCTGGGTCAGGACACCGGCGTCATTGCGCCGGAAAGCCTCAAGGTGGCCGTCATCGACACCACCGTCATGCCCAAGGCGATTGCCTATCCCAGTGA
CGCCCGCCTTGCAGGCCGTTGCCACCGGCAACTGGTCGCGCTGGCCAAGGATGAGGGCATCAAATTCCGGCAGACCTTCTGTAAGGGGTTGCCCGGCCTG
GTCTGGCAGGTGGGCCGCTATGCCCATGCCCGGCAGTTCAAGCGGATGCACAAGGTGCTGCGCCGGATGCACCGGAACCTGGCCAGGATCTGTGAGGCCA
TCGTTGACCAGCGCACGATGGAGGAGCGCTCCGAGCGCCTGAATCACAAGCTCCATCAGGCCTTGCAGTTGCTGAACCAGTATGGCGACCGCACCGTCAA
ACCCCGGCTGTACAGCCTGCACGAACCGGAAGTGGTGTGTATCGCCAAAGGCAAGGCCCGCACCCGTTATGAGTTCGGCTCCAAGGTCAGCGTGGTGACC
ACAGCCAAAGAAGGCTTTGTGCTGGATTGCCAGGCCCTGGCCGGCAATCCCTACGATGGTCACACCGTCGACACAGCGCTCAAACGAGTGCTTCTGCATA
CCCGCAAGATGCCGGAGCATCTGTTGGCCGACCGAGGCTACCGTGGCAGCGAAAGCACGTACCTCTCCAGGATCCACATCACCGGCAAGCGGCGAGGCCG
CGGCAGGGCCCACCCCGATCAGCAACACCGACGAAACAGTATCGAGCCGATCATCGGCCACCTGAAAAGCGACGGCCTGATGTATCGGAACTTCCTCAGA
GGGTTTACCGGCGACACGATACACGCGGTTCTGTGCGGCGTTGGCCTGAACCTGAGGAAGGTTCTGAGGAAGCTCGTCGAGCTTCTTTGGCCTTATGAAA
ACGGACGGCATTTACGCCTGATATTGGCTATTTTATGGTCAACCCCGGCGTTGCCGGATGAATCGGCAGAGACCGGTAAATTGCTGGCTGTCTGAAAACG
GCGTTTTTGCAGGGGCGAC
GAAGAAAGCCCTATGATCCCACGGGATAAGCGCCAGGCACCACAGCGAGATCTGCTGGAAACCTACCTCGAAGACATCCTCAACCCCCGGCACGAACTGG
TGCAGATGGGTAAACGGATCGACTGGACCGCCTGCGAACAACATTTTGGTCAGTTGTACGCGGTGCAAGCCGGGCGTCCGGGACTGCCCATCCGGTTACA
CGTGGGCTTGCAGTTGCTCAAGCACATGTATGCGCTGTCAGACCGTGATGTTCTGGATCGCTGGGTAGAGAACCCCTACTGGCAACACTTCTGCGGCGAA
GTGATCTTCCAACACCGGCTGCCCATGGACGAAACCACCATGATGCGGTTCCGGCACCGCATTGGCGAAGGCGGTGCCTGTGAGCTTCTCAAAATGAGCA
TTGCCCTGGGTCAGGACACCGGCGTCATTGCGCCGGAAAGCCTCAAGGTGGCCGTCATCGACACCACCGTCATGCCCAAGGCGATTGCCTATCCCAGTGA
CGCCCGCCTTGCAGGCCGTTGCCACCGGCAACTGGTCGCGCTGGCCAAGGATGAGGGCATCAAATTCCGGCAGACCTTCTGTAAGGGGTTGCCCGGCCTG
GTCTGGCAGGTGGGCCGCTATGCCCATGCCCGGCAGTTCAAGCGGATGCACAAGGTGCTGCGCCGGATGCACCGGAACCTGGCCAGGATCTGTGAGGCCA
TCGTTGACCAGCGCACGATGGAGGAGCGCTCCGAGCGCCTGAATCACAAGCTCCATCAGGCCTTGCAGTTGCTGAACCAGTATGGCGACCGCACCGTCAA
ACCCCGGCTGTACAGCCTGCACGAACCGGAAGTGGTGTGTATCGCCAAAGGCAAGGCCCGCACCCGTTATGAGTTCGGCTCCAAGGTCAGCGTGGTGACC
ACAGCCAAAGAAGGCTTTGTGCTGGATTGCCAGGCCCTGGCCGGCAATCCCTACGATGGTCACACCGTCGACACAGCGCTCAAACGAGTGCTTCTGCATA
CCCGCAAGATGCCGGAGCATCTGTTGGCCGACCGAGGCTACCGTGGCAGCGAAAGCACGTACCTCTCCAGGATCCACATCACCGGCAAGCGGCGAGGCCG
CGGCAGGGCCCACCCCGATCAGCAACACCGACGAAACAGTATCGAGCCGATCATCGGCCACCTGAAAAGCGACGGCCTGATGTATCGGAACTTCCTCAGA
GGGTTTACCGGCGACACGATACACGCGGTTCTGTGCGGCGTTGGCCTGAACCTGAGGAAGGTTCTGAGGAAGCTCGTCGAGCTTCTTTGGCCTTATGAAA
ACGGACGGCATTTACGCCTGATATTGGCTATTTTATGGTCAACCCCGGCGTTGCCGGATGAATCGGCAGAGACCGGTAAATTGCTGGCTGTCTGAAAACG
GCGTTTTTGCAGGGGCGAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1383 bp | 460 aa | 113 | 1495 | + | No |
Chemistry : DDE
ORF sequence :
MIPRDKRQAPQRDLLETYLEDILNPRHELVQMGKRIDWTACEQHFGQLYAVQAGRPGLPIRLHVGLQLLKHMYALSDRDVLDRWVENPYWQHFCGEVIFQ
HRLPMDETTMMRFRHRIGEGGACELLKMSIALGQDTGVIAPESLKVAVIDTTVMPKAIAYPSDARLAGRCHRQLVALAKDEGIKFRQTFCKGLPGLVWQV
GRYAHARQFKRMHKVLRRMHRNLARICEAIVDQRTMEERSERLNHKLHQALQLLNQYGDRTVKPRLYSLHEPEVVCIAKGKARTRYEFGSKVSVVTTAKE
GFVLDCQALAGNPYDGHTVDTALKRVLLHTRKMPEHLLADRGYRGSESTYLSRIHITGKRRGRGRAHPDQQHRRNSIEPIIGHLKSDGLMYRNFLRGFTG
DTIHAVLCGVGLNLRKVLRKLVELLWPYENGRHLRLILAILWSTPALPDESAETGKLLAV
HRLPMDETTMMRFRHRIGEGGACELLKMSIALGQDTGVIAPESLKVAVIDTTVMPKAIAYPSDARLAGRCHRQLVALAKDEGIKFRQTFCKGLPGLVWQV
GRYAHARQFKRMHKVLRRMHRNLARICEAIVDQRTMEERSERLNHKLHQALQLLNQYGDRTVKPRLYSLHEPEVVCIAKGKARTRYEFGSKVSVVTTAKE
GFVLDCQALAGNPYDGHTVDTALKRVLLHTRKMPEHLLADRGYRGSESTYLSRIHITGKRRGRGRAHPDQQHRRNSIEPIIGHLKSDGLMYRNFLRGFTG
DTIHAVLCGVGLNLRKVLRKLVELLWPYENGRHLRLILAILWSTPALPDESAETGKLLAV
Blast result :
Comments
ISMaq6 is 63% aa similar to ISRhsp1.
References
1] Isfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Edwards,K. and Richardson,P. (2007) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Edwards,K. and Richardson,P. (2007) Direct submission GenBank.