ISRpa9

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008435 ND Rhodopseudomonas palustris
Rhodopseudomonas palustris BisA53
DNA section
IS Length : 1539 bp

Ends


IR Length : 27/34

IRL : GTCGTCCGTGAACAATTCGGAAGCGGCTGATTTTCTGAATTAATCGCTCG
IRR : GTCGTCCGTGAAGATCCCGGACACGCGCTGATTTAGGCGTATTGCGTCCG

Insertion site


Left flankDirect repeatRight flankDR Length
AAGCCGACATTTTGTGCCGCCTGCTG6

DNA sequence

GTCGTCCGTGAACAATTCGGAAGCGGCTGATTTTCTGAATTAATCGCTCGCGGGAAAGTATTCGATTTTGCAGGAAAGCCGCGGTTTGACCGCGGCTTTG
TTGCGTTTTGGGATTCTCATTTCGGGCGGTTTGTGATTCCTTTGGGCTGCGCTTTGCGGGCACGGAGGGGCGATGAGCAAGCCGCGCGACGATCGTCAGG
CCGAGATGTTCCGGCCGGCGCTGGAGCAGATCATCGATCTCGGGCATCCGCTGGTGCGGCTGGCCGCAGAGCTCGATTGGGCGTTTCTGAAGACGCGGTT
CGGCGCGGTGTACCGGGCGGGGCCGGGCCAGCCGCCATTGCCAACCCGGCTGATCGCCGGGCTGTTGATCCTCAAGCACATGCACAATTTGAGCGACGAA
GCTCTGTGCGCGCGCTGGGTGGAGAACCCGTATTTCCAGTTCTTCTGCGGCGAGGTGGTGTTCCGCCACGAGCTGCCGTTCGACCGTTCCTCGTTGAGCC
GCTGGCGCAAGCGGCTGTGTGAAGAGCAACTCGCGGCGCTGTTGCAGGAGAGCCTGGCGCTGGCGCATCGCTCAGGTGCGCTGCAGACCAAGGACCTGCA
GCGGGTGGTGGTCGACACCACCGTGCAGGAGAAGGCAATCGCGCATCCGACCGACGCCCGGCTCAATCATCGCACGATCGAGAAGCTGGTCGATCTGGCC
AAGCGCCAGGGCGTGGCGCTGCGGCAAAGCTATCTGCGCCTCGCCAAGCGCGCCGCAATCATGGTCGGGCGCTACACCCACGCCCATCAGTTCAAGCGCG
CCCGCCGCGCGCTCAAATTCCTGCGCACCAGGCTCGGGCGGATCATCCGCGACATCCGCCGCAAGATCGAGGGCAACGCCGCGCTTGAAGATCGCTTCGC
GCCGCTGCTCGATCTCGCCGTTCGGGTGATGCAGCAGGATCATCGCCAGCGCGGCCAGAAGGTCTATGCGCTGCACGCCCCGGAGGTCGAATGCATCGGC
AAGGGCAAGGCGCGTAAGCCATACGAGTTCGGCTGCAAGGTCTCGGTGGTCACCCCGGTCACCGCGCCGAAGGGCGGCCAGTTCGTGCTGCACGCCAAGG
CGCTGCACGGCAATCCATTTGATGGCCACACGCTAGGGTCGATCATCGCCGATCTGCAAACCCAGACCGGCGTCGAGGTGGAACGCATCCATGTCGACAA
AGGCTATCGCGGCCATAGCTATCCGAATCGCTTCAAGGTCTGGATCTCCGGCCAGGTCCGCCGCGTCACCAAGGCCATCCGCCGCGAGATGAAGCGCCGC
GCCGCGGTCGAGCCGGTGATCGGTCATCTCAAGGCCGAGCACCGGATGGGCAGCAACCATCTCAAGGGCCGCCACGGTGACCGCGCCAACGCCGTGCTCG
CCGCAGCCGGCTTCAACTTCCACCTGCTGCTGCGATGGTTCGAACGGCTTTTGCGCGCCCTGCTGCGGATGCTCTGCAGCACCAGAGCCCGGACGCAATA
CGCCTAAATCAGCGCGTGTCCGGGATCTTCACGGACGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1335 bp444 aa1731507+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKPRDDRQAEMFRPALEQIIDLGHPLVRLAAELDWAFLKTRFGAVYRAGPGQPPLPTRLIAGLLILKHMHNLSDEALCARWVENPYFQFFCGEVVFRHE
LPFDRSSLSRWRKRLCEEQLAALLQESLALAHRSGALQTKDLQRVVVDTTVQEKAIAHPTDARLNHRTIEKLVDLAKRQGVALRQSYLRLAKRAAIMVGR
YTHAHQFKRARRALKFLRTRLGRIIRDIRRKIEGNAALEDRFAPLLDLAVRVMQQDHRQRGQKVYALHAPEVECIGKGKARKPYEFGCKVSVVTPVTAPK
GGQFVLHAKALHGNPFDGHTLGSIIADLQTQTGVEVERIHVDKGYRGHSYPNRFKVWISGQVRRVTKAIRREMKRRAAVEPVIGHLKAEHRMGSNHLKGR
HGDRANAVLAAAGFNFHLLLRWFERLLRALLRMLCSTRARTQYA

 

Blast result :
Comments
ISRpa9 is 93% aa similar to ISRpa8.
References
1] ISfinder annotation (2010)
2] Oda,Y., Larimer,F.W., Chain,P.S., Malfatti,S., Shin,M.V., Vergez,L.M., Hauser,L., Land,M.L., Braatsch,S., Beatty,J.T., Pelletier,D.A., Schaefer,A.L. and Harwood,C.S. (2008) Proc. Natl. Acad. Sci. U.S.A. 105 (47), 18543-18548