ISRpa9
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008435 | ND | Rhodopseudomonas palustris | Rhodopseudomonas palustris BisA53 |
DNA section
IS Length : 1539 bp
Ends
IR Length : 27/34
IRL : GTCGTCCGTGAACAATTCGGAAGCGGCTGATTTTCTGAATTAATCGCTCG
IRR : GTCGTCCGTGAAGATCCCGGACACGCGCTGATTTAGGCGTATTGCGTCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAGCCGACAT | TTTGTG | CCGCCTGCTG | 6 |
DNA sequence
GTCGTCCGTGAACAATTCGGAAGCGGCTGATTTTCTGAATTAATCGCTCGCGGGAAAGTATTCGATTTTGCAGGAAAGCCGCGGTTTGACCGCGGCTTTG
TTGCGTTTTGGGATTCTCATTTCGGGCGGTTTGTGATTCCTTTGGGCTGCGCTTTGCGGGCACGGAGGGGCGATGAGCAAGCCGCGCGACGATCGTCAGG
CCGAGATGTTCCGGCCGGCGCTGGAGCAGATCATCGATCTCGGGCATCCGCTGGTGCGGCTGGCCGCAGAGCTCGATTGGGCGTTTCTGAAGACGCGGTT
CGGCGCGGTGTACCGGGCGGGGCCGGGCCAGCCGCCATTGCCAACCCGGCTGATCGCCGGGCTGTTGATCCTCAAGCACATGCACAATTTGAGCGACGAA
GCTCTGTGCGCGCGCTGGGTGGAGAACCCGTATTTCCAGTTCTTCTGCGGCGAGGTGGTGTTCCGCCACGAGCTGCCGTTCGACCGTTCCTCGTTGAGCC
GCTGGCGCAAGCGGCTGTGTGAAGAGCAACTCGCGGCGCTGTTGCAGGAGAGCCTGGCGCTGGCGCATCGCTCAGGTGCGCTGCAGACCAAGGACCTGCA
GCGGGTGGTGGTCGACACCACCGTGCAGGAGAAGGCAATCGCGCATCCGACCGACGCCCGGCTCAATCATCGCACGATCGAGAAGCTGGTCGATCTGGCC
AAGCGCCAGGGCGTGGCGCTGCGGCAAAGCTATCTGCGCCTCGCCAAGCGCGCCGCAATCATGGTCGGGCGCTACACCCACGCCCATCAGTTCAAGCGCG
CCCGCCGCGCGCTCAAATTCCTGCGCACCAGGCTCGGGCGGATCATCCGCGACATCCGCCGCAAGATCGAGGGCAACGCCGCGCTTGAAGATCGCTTCGC
GCCGCTGCTCGATCTCGCCGTTCGGGTGATGCAGCAGGATCATCGCCAGCGCGGCCAGAAGGTCTATGCGCTGCACGCCCCGGAGGTCGAATGCATCGGC
AAGGGCAAGGCGCGTAAGCCATACGAGTTCGGCTGCAAGGTCTCGGTGGTCACCCCGGTCACCGCGCCGAAGGGCGGCCAGTTCGTGCTGCACGCCAAGG
CGCTGCACGGCAATCCATTTGATGGCCACACGCTAGGGTCGATCATCGCCGATCTGCAAACCCAGACCGGCGTCGAGGTGGAACGCATCCATGTCGACAA
AGGCTATCGCGGCCATAGCTATCCGAATCGCTTCAAGGTCTGGATCTCCGGCCAGGTCCGCCGCGTCACCAAGGCCATCCGCCGCGAGATGAAGCGCCGC
GCCGCGGTCGAGCCGGTGATCGGTCATCTCAAGGCCGAGCACCGGATGGGCAGCAACCATCTCAAGGGCCGCCACGGTGACCGCGCCAACGCCGTGCTCG
CCGCAGCCGGCTTCAACTTCCACCTGCTGCTGCGATGGTTCGAACGGCTTTTGCGCGCCCTGCTGCGGATGCTCTGCAGCACCAGAGCCCGGACGCAATA
CGCCTAAATCAGCGCGTGTCCGGGATCTTCACGGACGAC
TTGCGTTTTGGGATTCTCATTTCGGGCGGTTTGTGATTCCTTTGGGCTGCGCTTTGCGGGCACGGAGGGGCGATGAGCAAGCCGCGCGACGATCGTCAGG
CCGAGATGTTCCGGCCGGCGCTGGAGCAGATCATCGATCTCGGGCATCCGCTGGTGCGGCTGGCCGCAGAGCTCGATTGGGCGTTTCTGAAGACGCGGTT
CGGCGCGGTGTACCGGGCGGGGCCGGGCCAGCCGCCATTGCCAACCCGGCTGATCGCCGGGCTGTTGATCCTCAAGCACATGCACAATTTGAGCGACGAA
GCTCTGTGCGCGCGCTGGGTGGAGAACCCGTATTTCCAGTTCTTCTGCGGCGAGGTGGTGTTCCGCCACGAGCTGCCGTTCGACCGTTCCTCGTTGAGCC
GCTGGCGCAAGCGGCTGTGTGAAGAGCAACTCGCGGCGCTGTTGCAGGAGAGCCTGGCGCTGGCGCATCGCTCAGGTGCGCTGCAGACCAAGGACCTGCA
GCGGGTGGTGGTCGACACCACCGTGCAGGAGAAGGCAATCGCGCATCCGACCGACGCCCGGCTCAATCATCGCACGATCGAGAAGCTGGTCGATCTGGCC
AAGCGCCAGGGCGTGGCGCTGCGGCAAAGCTATCTGCGCCTCGCCAAGCGCGCCGCAATCATGGTCGGGCGCTACACCCACGCCCATCAGTTCAAGCGCG
CCCGCCGCGCGCTCAAATTCCTGCGCACCAGGCTCGGGCGGATCATCCGCGACATCCGCCGCAAGATCGAGGGCAACGCCGCGCTTGAAGATCGCTTCGC
GCCGCTGCTCGATCTCGCCGTTCGGGTGATGCAGCAGGATCATCGCCAGCGCGGCCAGAAGGTCTATGCGCTGCACGCCCCGGAGGTCGAATGCATCGGC
AAGGGCAAGGCGCGTAAGCCATACGAGTTCGGCTGCAAGGTCTCGGTGGTCACCCCGGTCACCGCGCCGAAGGGCGGCCAGTTCGTGCTGCACGCCAAGG
CGCTGCACGGCAATCCATTTGATGGCCACACGCTAGGGTCGATCATCGCCGATCTGCAAACCCAGACCGGCGTCGAGGTGGAACGCATCCATGTCGACAA
AGGCTATCGCGGCCATAGCTATCCGAATCGCTTCAAGGTCTGGATCTCCGGCCAGGTCCGCCGCGTCACCAAGGCCATCCGCCGCGAGATGAAGCGCCGC
GCCGCGGTCGAGCCGGTGATCGGTCATCTCAAGGCCGAGCACCGGATGGGCAGCAACCATCTCAAGGGCCGCCACGGTGACCGCGCCAACGCCGTGCTCG
CCGCAGCCGGCTTCAACTTCCACCTGCTGCTGCGATGGTTCGAACGGCTTTTGCGCGCCCTGCTGCGGATGCTCTGCAGCACCAGAGCCCGGACGCAATA
CGCCTAAATCAGCGCGTGTCCGGGATCTTCACGGACGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1335 bp | 444 aa | 173 | 1507 | + | No |
Chemistry : DDE
ORF sequence :
MSKPRDDRQAEMFRPALEQIIDLGHPLVRLAAELDWAFLKTRFGAVYRAGPGQPPLPTRLIAGLLILKHMHNLSDEALCARWVENPYFQFFCGEVVFRHE
LPFDRSSLSRWRKRLCEEQLAALLQESLALAHRSGALQTKDLQRVVVDTTVQEKAIAHPTDARLNHRTIEKLVDLAKRQGVALRQSYLRLAKRAAIMVGR
YTHAHQFKRARRALKFLRTRLGRIIRDIRRKIEGNAALEDRFAPLLDLAVRVMQQDHRQRGQKVYALHAPEVECIGKGKARKPYEFGCKVSVVTPVTAPK
GGQFVLHAKALHGNPFDGHTLGSIIADLQTQTGVEVERIHVDKGYRGHSYPNRFKVWISGQVRRVTKAIRREMKRRAAVEPVIGHLKAEHRMGSNHLKGR
HGDRANAVLAAAGFNFHLLLRWFERLLRALLRMLCSTRARTQYA
LPFDRSSLSRWRKRLCEEQLAALLQESLALAHRSGALQTKDLQRVVVDTTVQEKAIAHPTDARLNHRTIEKLVDLAKRQGVALRQSYLRLAKRAAIMVGR
YTHAHQFKRARRALKFLRTRLGRIIRDIRRKIEGNAALEDRFAPLLDLAVRVMQQDHRQRGQKVYALHAPEVECIGKGKARKPYEFGCKVSVVTPVTAPK
GGQFVLHAKALHGNPFDGHTLGSIIADLQTQTGVEVERIHVDKGYRGHSYPNRFKVWISGQVRRVTKAIRREMKRRAAVEPVIGHLKAEHRMGSNHLKGR
HGDRANAVLAAAGFNFHLLLRWFERLLRALLRMLCSTRARTQYA
Blast result :
Comments
ISRpa9 is 93% aa similar to ISRpa8.
References
1] ISfinder annotation (2010)
2] Oda,Y., Larimer,F.W., Chain,P.S., Malfatti,S., Shin,M.V., Vergez,L.M., Hauser,L., Land,M.L., Braatsch,S., Beatty,J.T., Pelletier,D.A., Schaefer,A.L. and Harwood,C.S. (2008) Proc. Natl. Acad. Sci. U.S.A. 105 (47), 18543-18548
2] Oda,Y., Larimer,F.W., Chain,P.S., Malfatti,S., Shin,M.V., Vergez,L.M., Hauser,L., Land,M.L., Braatsch,S., Beatty,J.T., Pelletier,D.A., Schaefer,A.L. and Harwood,C.S. (2008) Proc. Natl. Acad. Sci. U.S.A. 105 (47), 18543-18548