ISButh4
- Family IS5
- Group IS5
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABBM01000597 | ND | Burkholderia thailandensis | Burkholderia thailandensis MSMB43 |
DNA section
IS Length : 1483 bp
Ends
IR Length : 14/16
IRL : GTCGGATCTGAACAATCCTGCGAGGCATGCGCAGTAAGGCTGTGATGACG
IRR : GTCGGCCCTGAACAATTCGTTTTGTCGCCCCCATGAAGCTATGCCGCCGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CAAATACGGC | TAATTA | CACTGCGCCC | 6 |
DNA sequence
GTCGGATCTGAACAATCCTGCGAGGCATGCGCAGTAAGGCTGTGATGACGAAACGGTGTTGTTGGATTTGCAGGAAGCAGGCATATTGATGCGCGAATCC
TGCAAATCCTGACGAGGTGTGGATGGGTCCGAAGACGCCGGTGCCAGAAGGAGATTTCTTCCGCCAACCGCTGCGTGAGCAGATCAACTTGAAGCATCCA
TTGGTTCGCCTTGCCGATCTGATCGACTGGGAACGGTTGAACGCGGCGATGAGTGCGAGCTTCATGTCTCATCGCGGCCGCCCGGCAACGTCGCCGCGTT
TGATCGCAGGGCTGCTGTATTTGCAACATGCCTTCGACTTGTCGGACGAGGACGTGGTCTGGCAATGGCTTGAGAACCCGTATTGGCAGGTGTTCACCGG
CGAGACGTACTTGCAGACGAAGCCGCCGATTGATCCGTCGAGCCTGACGCGCTGGCGCAAGCGGCTTGGCGAGGCCGGCGTCGAAGAGCTGCTGGCCGAG
ACGATCGAAGCGGCCAAACGCGCAAACGTCATCAAGACTTCGAGCCTGAAGCGGGTGATCGTCGATACGACGGTGATGGAAAAAGCGATTGCACATCCCA
CCGATTCGCGCCTGCTCGAGCGTTGCCGGGAACATCTGGTGAAGGCTGCTGCCGAGCAGGGACTGAAGCTGCGACAGAACTACAACCGTGAAGCGCCGCG
TCTGGCGGGCCAGATCGGGCGCTACGCGCATGCCAAGCAGTACAAGCGGATGAAGAAAGCGCTGCGCACTTTGCGTTCGCGAGTGGGGCGCGTGATGCGC
GACGTCGAGCGCCAACTGGACGGCGTCGCTCAGCAAGGTCGGGCGGCGCTGGAAGAGCTAATTGGCCGCACGAAGCGGATTCTCACGCAGAAGCAGAAGG
ACAAAAACAAGCTGTATGCGCTACATGCGCCGGAAGTCGAGTGCCTGGCGAAAGGCAAAGCGCGCAAGCCGTACGAATTCGGCGTAAAGGTGTCGATCAC
GACGACGCACAAGGAAGGTTTGGTCGTCGGAGCTCGTTCGATGCCGGGCAATCCGTACGACGGGCACACGCTGGCCGAAGCGTTGGAGCAAGCGGCGATC
CTGAGCGACGTACAAGCGGAGATTGCCGTCGTCGACCGCGGCTACAAGGGTGTCGCCGTCGACGGCGTGAAGATCTATCATCCCGGCTTGCGACGCGGCA
TCACGCGCGGCCTGCGAGCAATGATCCGGCGTCGCAGCGCGATCGAGCCGGCCATCGGACACATGAAGGCCGATGGCAAGCTCGATCGGAATTGGCTCAA
GGGCTCGTTGGGCGATGCAATTCATGCGGTACTGTGCGGCGCCGGCCACAATCTGCGGATGATCCTGTGCAAGCTGCGGCTTTTTTACGCCCTGATTCTC
GTCGCTTTGCTCAACGCCAAAACCGCTGCGCCGTCGGCGGCATAGCTTCATGGGGGCGACAAAACGAATTGTTCAGGGCCGAC
TGCAAATCCTGACGAGGTGTGGATGGGTCCGAAGACGCCGGTGCCAGAAGGAGATTTCTTCCGCCAACCGCTGCGTGAGCAGATCAACTTGAAGCATCCA
TTGGTTCGCCTTGCCGATCTGATCGACTGGGAACGGTTGAACGCGGCGATGAGTGCGAGCTTCATGTCTCATCGCGGCCGCCCGGCAACGTCGCCGCGTT
TGATCGCAGGGCTGCTGTATTTGCAACATGCCTTCGACTTGTCGGACGAGGACGTGGTCTGGCAATGGCTTGAGAACCCGTATTGGCAGGTGTTCACCGG
CGAGACGTACTTGCAGACGAAGCCGCCGATTGATCCGTCGAGCCTGACGCGCTGGCGCAAGCGGCTTGGCGAGGCCGGCGTCGAAGAGCTGCTGGCCGAG
ACGATCGAAGCGGCCAAACGCGCAAACGTCATCAAGACTTCGAGCCTGAAGCGGGTGATCGTCGATACGACGGTGATGGAAAAAGCGATTGCACATCCCA
CCGATTCGCGCCTGCTCGAGCGTTGCCGGGAACATCTGGTGAAGGCTGCTGCCGAGCAGGGACTGAAGCTGCGACAGAACTACAACCGTGAAGCGCCGCG
TCTGGCGGGCCAGATCGGGCGCTACGCGCATGCCAAGCAGTACAAGCGGATGAAGAAAGCGCTGCGCACTTTGCGTTCGCGAGTGGGGCGCGTGATGCGC
GACGTCGAGCGCCAACTGGACGGCGTCGCTCAGCAAGGTCGGGCGGCGCTGGAAGAGCTAATTGGCCGCACGAAGCGGATTCTCACGCAGAAGCAGAAGG
ACAAAAACAAGCTGTATGCGCTACATGCGCCGGAAGTCGAGTGCCTGGCGAAAGGCAAAGCGCGCAAGCCGTACGAATTCGGCGTAAAGGTGTCGATCAC
GACGACGCACAAGGAAGGTTTGGTCGTCGGAGCTCGTTCGATGCCGGGCAATCCGTACGACGGGCACACGCTGGCCGAAGCGTTGGAGCAAGCGGCGATC
CTGAGCGACGTACAAGCGGAGATTGCCGTCGTCGACCGCGGCTACAAGGGTGTCGCCGTCGACGGCGTGAAGATCTATCATCCCGGCTTGCGACGCGGCA
TCACGCGCGGCCTGCGAGCAATGATCCGGCGTCGCAGCGCGATCGAGCCGGCCATCGGACACATGAAGGCCGATGGCAAGCTCGATCGGAATTGGCTCAA
GGGCTCGTTGGGCGATGCAATTCATGCGGTACTGTGCGGCGCCGGCCACAATCTGCGGATGATCCTGTGCAAGCTGCGGCTTTTTTACGCCCTGATTCTC
GTCGCTTTGCTCAACGCCAAAACCGCTGCGCCGTCGGCGGCATAGCTTCATGGGGGCGACAAAACGAATTGTTCAGGGCCGAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1323 bp | 440 aa | 123 | 1445 | + | No |
Chemistry : DDE
ORF sequence :
MGPKTPVPEGDFFRQPLREQINLKHPLVRLADLIDWERLNAAMSASFMSHRGRPATSPRLIAGLLYLQHAFDLSDEDVVWQWLENPYWQVFTGETYLQTK
PPIDPSSLTRWRKRLGEAGVEELLAETIEAAKRANVIKTSSLKRVIVDTTVMEKAIAHPTDSRLLERCREHLVKAAAEQGLKLRQNYNREAPRLAGQIGR
YAHAKQYKRMKKALRTLRSRVGRVMRDVERQLDGVAQQGRAALEELIGRTKRILTQKQKDKNKLYALHAPEVECLAKGKARKPYEFGVKVSITTTHKEGL
VVGARSMPGNPYDGHTLAEALEQAAILSDVQAEIAVVDRGYKGVAVDGVKIYHPGLRRGITRGLRAMIRRRSAIEPAIGHMKADGKLDRNWLKGSLGDAI
HAVLCGAGHNLRMILCKLRLFYALILVALLNAKTAAPSAA
PPIDPSSLTRWRKRLGEAGVEELLAETIEAAKRANVIKTSSLKRVIVDTTVMEKAIAHPTDSRLLERCREHLVKAAAEQGLKLRQNYNREAPRLAGQIGR
YAHAKQYKRMKKALRTLRSRVGRVMRDVERQLDGVAQQGRAALEELIGRTKRILTQKQKDKNKLYALHAPEVECLAKGKARKPYEFGVKVSITTTHKEGL
VVGARSMPGNPYDGHTLAEALEQAAILSDVQAEIAVVDRGYKGVAVDGVKIYHPGLRRGITRGLRAMIRRRSAIEPAIGHMKADGKLDRNWLKGSLGDAI
HAVLCGAGHNLRMILCKLRLFYALILVALLNAKTAAPSAA
Blast result :
Comments
ISButh4 is 94% aa similar to ISRso9.
References
1] Isfinder annotation (2010)
2] Read,T.D., Lentz,S.M., Nolan,N.M., Willner,K.M., Akmal,A., Inglis,T., Merritt,A., Lum,G., Miralles,I., Levy,A., Gee,J., Glass,M. and Wilkins,P.(2007) Direct submission GenBank.
2] Read,T.D., Lentz,S.M., Nolan,N.M., Willner,K.M., Akmal,A., Inglis,T., Merritt,A., Lum,G., Miralles,I., Levy,A., Gee,J., Glass,M. and Wilkins,P.(2007) Direct submission GenBank.