ISVbsp2

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FP102531 ND Magnetic vibrio
Magnetic vibrio MV-1
DNA section
IS Length : 1489 bp

Ends


IR Length : 23/31

IRL : GTTCGCCCTGAAAAACTCTCAACATATTGATAAATAATGATTCCCTTGGG
IRR : GTTCGCCCTGAACAATGCCTAAGCCATTGATGTTTGGTATCGGATCATAA

Insertion site


Left flankDirect repeatRight flankDR Length
CACAACAATTTAAGTA/CAGTTCGGTTT6
GAACGCATTCAAATTACAGTCGCAAA6
TTGATAAATACAGATAAGGA0

DNA sequence

GTTCGCCCTGAAAAACTCTCAACATATTGATAAATAATGATTCCCTTGGGATTCTAAATATAGGAAAATGCCAGAAAGCAGTCCCGTAACGCTCATTTTC
TGGTAGATTCTCATGAAGCCTAAAAAACCCCGCCGCCGTGATGCCGATCTGTTTCGCGAACGTCTGGACGCCATCATCGACATGAAGCATCACTTGATCC
GGTTGGCCGGGATGATGCCCTGGTCTTCGTTTGATGAGGCCTTCGGCAAGCACTACAAACCGCTGGGCCGTCCGGCTAAATCGACGCGATTGATGGTCGG
TCTGCATTATTTGAAGCACATGCATGATCTGTCGGACGAAGAAGCGGTAGAGCGCTGGGTCGAGAACCCCTACTGGCAATATTTCTGCGGATTTGAGTTC
TTTCAACATCATCTTCCCATTGATCCCAGCACCATGACGCGCTGGCGCAAACGGGTTGGCCCAGAGGGCATGGAAAAGGTTTTGGCGGCCACCGTTGGCG
TGGCGGTCGAGACCGGGGCGGTGAAGGAAAGCAGCTTTCAGCGGATCACCGTTGACACCACGGTGCAGCCGAAGAACATCGCCCACCCGACGGATAGCCG
ATTGTATCTGAAAGCCCTGCAAACATTGGTGCGCCAAGCCAAGCGCCACGGCATCTTGTTGCGCCGCAGCCACACTCGGGTGGCCAAGCGGGCGGCGCTG
ATGGCCGGGCGCTATGCCCACGCAAAACAGTTCAGGCGCATGCGCCGCGAGATCAAGAAGCTGAAGACGTTCCTGGGCCGTGTGTACCGCGATATCGTCC
GAAAGGTCGCTGGTAATGCTGCTCTGGAAGCTCGGTTTGCCCGGCTTTTGGGCCTCGTCGAACGCCTTCTGACCCAGAAAACCAAGGACAAAAACAAACT
CTACGCCCTGCATGCTCCGGAGGTCGCCTGCATCGCCAAGGGCAAGGCGCGCACACCCTACGAGTTCGGCGCCAAGGTTGGCATCGCCACCACCAATCGT
GAAGGCTTGGTGCTGGCGGCAAAGAGCTTCGAAGGCAATCCTTACGATGGACATACCCTGTCCGACACCGTCGCCCAGGCCGCGCAAATGACTGGTGTCG
ATCCCGAGCGGATTTATGCCGATAGGGGCTATCGCGGCCATAATTACGAGGGCGAGGCCTCGGTCATGCTGTCCGGACACAAGCGCGGATTGAGCCCCCA
AATGAAGCGTGAGTTGAAACGAAGATCGGCCATCGAGGCGACCATCGGGCATATGAAAACCGATGGCAGGCTTGATCGAAACTTCCTAAAAGGCCAAACT
GGCGACGCCATCAACGCTCTGCTGGTTGCCGCAGGCCACAACATGCGCCTGATCCTCAACGCCCTGGCATTTTGGCTTGCCTGGATCATGAGCGTGACAG
AAAAGACAGTCAAAATAGTAAAAACGGATACTTCCCGACTTATGATCCGATACCAAACATCAATGGCTTAGGCATTGTTCAGGGCGAAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1359 bp452 aa1131471+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKPKKPRRRDADLFRERLDAIIDMKHHLIRLAGMMPWSSFDEAFGKHYKPLGRPAKSTRLMVGLHYLKHMHDLSDEEAVERWVENPYWQYFCGFEFFQHH
LPIDPSTMTRWRKRVGPEGMEKVLAATVGVAVETGAVKESSFQRITVDTTVQPKNIAHPTDSRLYLKALQTLVRQAKRHGILLRRSHTRVAKRAALMAGR
YAHAKQFRRMRREIKKLKTFLGRVYRDIVRKVAGNAALEARFARLLGLVERLLTQKTKDKNKLYALHAPEVACIAKGKARTPYEFGAKVGIATTNREGLV
LAAKSFEGNPYDGHTLSDTVAQAAQMTGVDPERIYADRGYRGHNYEGEASVMLSGHKRGLSPQMKRELKRRSAIEATIGHMKTDGRLDRNFLKGQTGDAI
NALLVAAGHNMRLILNALAFWLAWIMSVTEKTVKIVKTDTSRLMIRYQTSMA

 

Blast result :
Comments
ISVbsp2 is 82% aa similar to ISRm12.
References
1] ISfinder annotation (2010)
2] Jogler,C., Kube,M., Schubbe,S., Ullrich,S., Teeling,H., Bazylinski,D.A., Reinhardt,R. and Schuler,D. (2009) Environ. Microbiol. 11 (5), 1267-1277