ISVbsp2
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FP102531 | ND | Magnetic vibrio | Magnetic vibrio MV-1 |
DNA section
IS Length : 1489 bp
Ends
IR Length : 23/31
IRL : GTTCGCCCTGAAAAACTCTCAACATATTGATAAATAATGATTCCCTTGGG
IRR : GTTCGCCCTGAACAATGCCTAAGCCATTGATGTTTGGTATCGGATCATAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CACAACAATT | TAAGTA/C | AGTTCGGTTT | 6 |
GAACGCATTC | AAATTA | CAGTCGCAAA | 6 |
TTGATAAATA | CAGATAAGGA | 0 |
DNA sequence
GTTCGCCCTGAAAAACTCTCAACATATTGATAAATAATGATTCCCTTGGGATTCTAAATATAGGAAAATGCCAGAAAGCAGTCCCGTAACGCTCATTTTC
TGGTAGATTCTCATGAAGCCTAAAAAACCCCGCCGCCGTGATGCCGATCTGTTTCGCGAACGTCTGGACGCCATCATCGACATGAAGCATCACTTGATCC
GGTTGGCCGGGATGATGCCCTGGTCTTCGTTTGATGAGGCCTTCGGCAAGCACTACAAACCGCTGGGCCGTCCGGCTAAATCGACGCGATTGATGGTCGG
TCTGCATTATTTGAAGCACATGCATGATCTGTCGGACGAAGAAGCGGTAGAGCGCTGGGTCGAGAACCCCTACTGGCAATATTTCTGCGGATTTGAGTTC
TTTCAACATCATCTTCCCATTGATCCCAGCACCATGACGCGCTGGCGCAAACGGGTTGGCCCAGAGGGCATGGAAAAGGTTTTGGCGGCCACCGTTGGCG
TGGCGGTCGAGACCGGGGCGGTGAAGGAAAGCAGCTTTCAGCGGATCACCGTTGACACCACGGTGCAGCCGAAGAACATCGCCCACCCGACGGATAGCCG
ATTGTATCTGAAAGCCCTGCAAACATTGGTGCGCCAAGCCAAGCGCCACGGCATCTTGTTGCGCCGCAGCCACACTCGGGTGGCCAAGCGGGCGGCGCTG
ATGGCCGGGCGCTATGCCCACGCAAAACAGTTCAGGCGCATGCGCCGCGAGATCAAGAAGCTGAAGACGTTCCTGGGCCGTGTGTACCGCGATATCGTCC
GAAAGGTCGCTGGTAATGCTGCTCTGGAAGCTCGGTTTGCCCGGCTTTTGGGCCTCGTCGAACGCCTTCTGACCCAGAAAACCAAGGACAAAAACAAACT
CTACGCCCTGCATGCTCCGGAGGTCGCCTGCATCGCCAAGGGCAAGGCGCGCACACCCTACGAGTTCGGCGCCAAGGTTGGCATCGCCACCACCAATCGT
GAAGGCTTGGTGCTGGCGGCAAAGAGCTTCGAAGGCAATCCTTACGATGGACATACCCTGTCCGACACCGTCGCCCAGGCCGCGCAAATGACTGGTGTCG
ATCCCGAGCGGATTTATGCCGATAGGGGCTATCGCGGCCATAATTACGAGGGCGAGGCCTCGGTCATGCTGTCCGGACACAAGCGCGGATTGAGCCCCCA
AATGAAGCGTGAGTTGAAACGAAGATCGGCCATCGAGGCGACCATCGGGCATATGAAAACCGATGGCAGGCTTGATCGAAACTTCCTAAAAGGCCAAACT
GGCGACGCCATCAACGCTCTGCTGGTTGCCGCAGGCCACAACATGCGCCTGATCCTCAACGCCCTGGCATTTTGGCTTGCCTGGATCATGAGCGTGACAG
AAAAGACAGTCAAAATAGTAAAAACGGATACTTCCCGACTTATGATCCGATACCAAACATCAATGGCTTAGGCATTGTTCAGGGCGAAC
TGGTAGATTCTCATGAAGCCTAAAAAACCCCGCCGCCGTGATGCCGATCTGTTTCGCGAACGTCTGGACGCCATCATCGACATGAAGCATCACTTGATCC
GGTTGGCCGGGATGATGCCCTGGTCTTCGTTTGATGAGGCCTTCGGCAAGCACTACAAACCGCTGGGCCGTCCGGCTAAATCGACGCGATTGATGGTCGG
TCTGCATTATTTGAAGCACATGCATGATCTGTCGGACGAAGAAGCGGTAGAGCGCTGGGTCGAGAACCCCTACTGGCAATATTTCTGCGGATTTGAGTTC
TTTCAACATCATCTTCCCATTGATCCCAGCACCATGACGCGCTGGCGCAAACGGGTTGGCCCAGAGGGCATGGAAAAGGTTTTGGCGGCCACCGTTGGCG
TGGCGGTCGAGACCGGGGCGGTGAAGGAAAGCAGCTTTCAGCGGATCACCGTTGACACCACGGTGCAGCCGAAGAACATCGCCCACCCGACGGATAGCCG
ATTGTATCTGAAAGCCCTGCAAACATTGGTGCGCCAAGCCAAGCGCCACGGCATCTTGTTGCGCCGCAGCCACACTCGGGTGGCCAAGCGGGCGGCGCTG
ATGGCCGGGCGCTATGCCCACGCAAAACAGTTCAGGCGCATGCGCCGCGAGATCAAGAAGCTGAAGACGTTCCTGGGCCGTGTGTACCGCGATATCGTCC
GAAAGGTCGCTGGTAATGCTGCTCTGGAAGCTCGGTTTGCCCGGCTTTTGGGCCTCGTCGAACGCCTTCTGACCCAGAAAACCAAGGACAAAAACAAACT
CTACGCCCTGCATGCTCCGGAGGTCGCCTGCATCGCCAAGGGCAAGGCGCGCACACCCTACGAGTTCGGCGCCAAGGTTGGCATCGCCACCACCAATCGT
GAAGGCTTGGTGCTGGCGGCAAAGAGCTTCGAAGGCAATCCTTACGATGGACATACCCTGTCCGACACCGTCGCCCAGGCCGCGCAAATGACTGGTGTCG
ATCCCGAGCGGATTTATGCCGATAGGGGCTATCGCGGCCATAATTACGAGGGCGAGGCCTCGGTCATGCTGTCCGGACACAAGCGCGGATTGAGCCCCCA
AATGAAGCGTGAGTTGAAACGAAGATCGGCCATCGAGGCGACCATCGGGCATATGAAAACCGATGGCAGGCTTGATCGAAACTTCCTAAAAGGCCAAACT
GGCGACGCCATCAACGCTCTGCTGGTTGCCGCAGGCCACAACATGCGCCTGATCCTCAACGCCCTGGCATTTTGGCTTGCCTGGATCATGAGCGTGACAG
AAAAGACAGTCAAAATAGTAAAAACGGATACTTCCCGACTTATGATCCGATACCAAACATCAATGGCTTAGGCATTGTTCAGGGCGAAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1359 bp | 452 aa | 113 | 1471 | + | No |
Chemistry : DDE
ORF sequence :
MKPKKPRRRDADLFRERLDAIIDMKHHLIRLAGMMPWSSFDEAFGKHYKPLGRPAKSTRLMVGLHYLKHMHDLSDEEAVERWVENPYWQYFCGFEFFQHH
LPIDPSTMTRWRKRVGPEGMEKVLAATVGVAVETGAVKESSFQRITVDTTVQPKNIAHPTDSRLYLKALQTLVRQAKRHGILLRRSHTRVAKRAALMAGR
YAHAKQFRRMRREIKKLKTFLGRVYRDIVRKVAGNAALEARFARLLGLVERLLTQKTKDKNKLYALHAPEVACIAKGKARTPYEFGAKVGIATTNREGLV
LAAKSFEGNPYDGHTLSDTVAQAAQMTGVDPERIYADRGYRGHNYEGEASVMLSGHKRGLSPQMKRELKRRSAIEATIGHMKTDGRLDRNFLKGQTGDAI
NALLVAAGHNMRLILNALAFWLAWIMSVTEKTVKIVKTDTSRLMIRYQTSMA
LPIDPSTMTRWRKRVGPEGMEKVLAATVGVAVETGAVKESSFQRITVDTTVQPKNIAHPTDSRLYLKALQTLVRQAKRHGILLRRSHTRVAKRAALMAGR
YAHAKQFRRMRREIKKLKTFLGRVYRDIVRKVAGNAALEARFARLLGLVERLLTQKTKDKNKLYALHAPEVACIAKGKARTPYEFGAKVGIATTNREGLV
LAAKSFEGNPYDGHTLSDTVAQAAQMTGVDPERIYADRGYRGHNYEGEASVMLSGHKRGLSPQMKRELKRRSAIEATIGHMKTDGRLDRNFLKGQTGDAI
NALLVAAGHNMRLILNALAFWLAWIMSVTEKTVKIVKTDTSRLMIRYQTSMA
Blast result :
Comments
ISVbsp2 is 82% aa similar to ISRm12.
References
1] ISfinder annotation (2010)
2] Jogler,C., Kube,M., Schubbe,S., Ullrich,S., Teeling,H., Bazylinski,D.A., Reinhardt,R. and Schuler,D. (2009) Environ. Microbiol. 11 (5), 1267-1277
2] Jogler,C., Kube,M., Schubbe,S., Ullrich,S., Teeling,H., Bazylinski,D.A., Reinhardt,R. and Schuler,D. (2009) Environ. Microbiol. 11 (5), 1267-1277