ISSlsp2

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009663 ND Sulfurovum sp.
Sulfurovum sp. NBC37-1
DNA section
IS Length : 1570 bp

Ends


IR Length : 17/20

IRL : GTTCCCCGTGAAAAACCCACAAAGCCCCACTGCAAGGGGTTTCAAAGCAC
IRR : GTTGCCCGTGAACAACTCCATTTTCAGATCCAATTATCCAAAAGAATCAT

Insertion site


Left flankDirect repeatRight flankDR Length
TTTTTAAATGTAATTAGGTATGGATG6
ACTCTGACATTATAGAGGTACAGTTA6

DNA sequence

GTTCCCCGTGAAAAACCCACAAAGCCCCACTGCAAGGGGTTTCAAAGCACTTTTATGCTACCCTAAATATACATAAAAGCACATAGCTACACTATAAAAC
CTTGCAGTTTTGGAGTATTTTATGATTCAGGAAAAACAAGAGAGAGTCACCTTGTTTGATCACTGCAAACAGCTGAGTGACATCATCGATGAAAATCATC
CGCTTGTTAAATTGGCAAACTCTATCGATTGGAAAAGTATCGAAGAAGATCTCAGTAAAGCCTATCCTTCCACTACAGGCCATCCCAATAAACCTATCCG
CCTGATGGTAGGGTTGCATTATCTGCGCTACATGTTTGATCTGAGTGATGAAAGTATCGTCTGGGCCTATATCGAGAATCCCTACTATCAGTACTTCTGC
GGAGAGAAAGTGTTTCAACACACTTTTCCTATAGACAGAAGCTCTATGAGCAAATTTCGAGAGAGGCTCAAAAAGAAAAAACTCTACAAACTGCTGCAAG
AGACCATCAAAAGCGGTTTTCAAACAAAAGTAATCAAACCCAAAAGTATAGAGTACGCCGTGATTGACTCTACGGTACAGGAGAAAAACATTGCCTACCC
CACAGATGCCAAACTCTATTACAAAGGCATTGTTCTTCTTGCCAAACTGGCCAGGCGTCTGAATATCAGACTCCGACAAAGCTATATCAGAGCAGGAAAG
AAACTCCTGATCAAATACTCCCGCTACAACCATGCCAAACAGTTCAGACGCAAAGCTGCCACACTCAAGAAACTCAAAATAAGACTGGGAAGGGTCTTGA
GAGAAATAGTACGAAAATCCGAAGAGGATGGGATCAGCCTGGACCTGGATGCCAGAATCCTTCTTGAACAGTGCCAAAAGCTCTTTGATCAAAAACGCAA
CTCCAAAAACAAACTCTACAGTTTTCATGAACCTCATACAGCCTGCATCTCAAAAGGCAAAGCACACAAGCGTTATGAGTTTGGCAACAAGTCCACTTTC
ATCACTACCACCAGGGAGTGTTTCATTATTCACGCTGATGCGCATGAAGGCAATCCCTATGACGGACATACGCTGAAAGAGGCACTCGATAAAACAAATG
AGAGTGTATCCGATCTATTCAATAAAAGTATTGATTACCTCTTTACCGATAAGGGGTACAGGGGTCACGGTTATCAAGGTGATACAACTGTACTGATCGA
GACATCTGCAAACAAAAAAAGACACAAGAAGCTCAAACGGAGATCCTCCATAGAAACGGTATTCTCCCATACCAAACAGGATCACCGGATGGGAAGAAAT
TTCCTCATAGGAGAACATGGCAATCTGGTCAATACGATTATGGCAGCCTGTGGATACAATCTAAGGAAAATCTACAACAAGTTCAGGAAGGCATTCGTGA
AAATGCTTTCTGTCTTGTTTTTTATGCTCTTTAGGGAGCAATACAGGGTTCAGTTGGTTCCAAACAGGGCTTAAATCCCGAATAGCATTTTTAGAAATGG
TATAAGGATGTGTTTGGGGTATGATTCTTTTGGATAATTGGATCTGAAAATGGAGTTGTTCACGGGCAAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1353 bp450 aa1221474+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIQEKQERVTLFDHCKQLSDIIDENHPLVKLANSIDWKSIEEDLSKAYPSTTGHPNKPIRLMVGLHYLRYMFDLSDESIVWAYIENPYYQYFCGEKVFQH
TFPIDRSSMSKFRERLKKKKLYKLLQETIKSGFQTKVIKPKSIEYAVIDSTVQEKNIAYPTDAKLYYKGIVLLAKLARRLNIRLRQSYIRAGKKLLIKYS
RYNHAKQFRRKAATLKKLKIRLGRVLREIVRKSEEDGISLDLDARILLEQCQKLFDQKRNSKNKLYSFHEPHTACISKGKAHKRYEFGNKSTFITTTREC
FIIHADAHEGNPYDGHTLKEALDKTNESVSDLFNKSIDYLFTDKGYRGHGYQGDTTVLIETSANKKRHKKLKRRSSIETVFSHTKQDHRMGRNFLIGEHG
NLVNTIMAACGYNLRKIYNKFRKAFVKMLSVLFFMLFREQYRVQLVPNRA

 

Blast result :
Comments
ISSlsp2 is 65% aa similar to ISMisp1.
References
1] ISfinder annotation (2010)
2] Nakagawa,S., Takaki,Y., Shimamura,S., Reysenbach,A.L., Takai,K. and Horikoshi,K. (2007) Proc. Natl. Acad. Sci. U.S.A. 104 (29), 12146-12150
3] Nakagawa,S., Takai,K., Inagaki,F., Hirayama,H., Nunoura,T., Horikoshi,K. and Sako,Y.(2005) Environ. Microbiol. 7 (10), 1619-1632.