ISSlsp2
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009663 | ND | Sulfurovum sp. | Sulfurovum sp. NBC37-1 |
DNA section
IS Length : 1570 bp
Ends
IR Length : 17/20
IRL : GTTCCCCGTGAAAAACCCACAAAGCCCCACTGCAAGGGGTTTCAAAGCAC
IRR : GTTGCCCGTGAACAACTCCATTTTCAGATCCAATTATCCAAAAGAATCAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTTTAAATG | TAATTA | GGTATGGATG | 6 |
ACTCTGACAT | TATAGA | GGTACAGTTA | 6 |
DNA sequence
GTTCCCCGTGAAAAACCCACAAAGCCCCACTGCAAGGGGTTTCAAAGCACTTTTATGCTACCCTAAATATACATAAAAGCACATAGCTACACTATAAAAC
CTTGCAGTTTTGGAGTATTTTATGATTCAGGAAAAACAAGAGAGAGTCACCTTGTTTGATCACTGCAAACAGCTGAGTGACATCATCGATGAAAATCATC
CGCTTGTTAAATTGGCAAACTCTATCGATTGGAAAAGTATCGAAGAAGATCTCAGTAAAGCCTATCCTTCCACTACAGGCCATCCCAATAAACCTATCCG
CCTGATGGTAGGGTTGCATTATCTGCGCTACATGTTTGATCTGAGTGATGAAAGTATCGTCTGGGCCTATATCGAGAATCCCTACTATCAGTACTTCTGC
GGAGAGAAAGTGTTTCAACACACTTTTCCTATAGACAGAAGCTCTATGAGCAAATTTCGAGAGAGGCTCAAAAAGAAAAAACTCTACAAACTGCTGCAAG
AGACCATCAAAAGCGGTTTTCAAACAAAAGTAATCAAACCCAAAAGTATAGAGTACGCCGTGATTGACTCTACGGTACAGGAGAAAAACATTGCCTACCC
CACAGATGCCAAACTCTATTACAAAGGCATTGTTCTTCTTGCCAAACTGGCCAGGCGTCTGAATATCAGACTCCGACAAAGCTATATCAGAGCAGGAAAG
AAACTCCTGATCAAATACTCCCGCTACAACCATGCCAAACAGTTCAGACGCAAAGCTGCCACACTCAAGAAACTCAAAATAAGACTGGGAAGGGTCTTGA
GAGAAATAGTACGAAAATCCGAAGAGGATGGGATCAGCCTGGACCTGGATGCCAGAATCCTTCTTGAACAGTGCCAAAAGCTCTTTGATCAAAAACGCAA
CTCCAAAAACAAACTCTACAGTTTTCATGAACCTCATACAGCCTGCATCTCAAAAGGCAAAGCACACAAGCGTTATGAGTTTGGCAACAAGTCCACTTTC
ATCACTACCACCAGGGAGTGTTTCATTATTCACGCTGATGCGCATGAAGGCAATCCCTATGACGGACATACGCTGAAAGAGGCACTCGATAAAACAAATG
AGAGTGTATCCGATCTATTCAATAAAAGTATTGATTACCTCTTTACCGATAAGGGGTACAGGGGTCACGGTTATCAAGGTGATACAACTGTACTGATCGA
GACATCTGCAAACAAAAAAAGACACAAGAAGCTCAAACGGAGATCCTCCATAGAAACGGTATTCTCCCATACCAAACAGGATCACCGGATGGGAAGAAAT
TTCCTCATAGGAGAACATGGCAATCTGGTCAATACGATTATGGCAGCCTGTGGATACAATCTAAGGAAAATCTACAACAAGTTCAGGAAGGCATTCGTGA
AAATGCTTTCTGTCTTGTTTTTTATGCTCTTTAGGGAGCAATACAGGGTTCAGTTGGTTCCAAACAGGGCTTAAATCCCGAATAGCATTTTTAGAAATGG
TATAAGGATGTGTTTGGGGTATGATTCTTTTGGATAATTGGATCTGAAAATGGAGTTGTTCACGGGCAAC
CTTGCAGTTTTGGAGTATTTTATGATTCAGGAAAAACAAGAGAGAGTCACCTTGTTTGATCACTGCAAACAGCTGAGTGACATCATCGATGAAAATCATC
CGCTTGTTAAATTGGCAAACTCTATCGATTGGAAAAGTATCGAAGAAGATCTCAGTAAAGCCTATCCTTCCACTACAGGCCATCCCAATAAACCTATCCG
CCTGATGGTAGGGTTGCATTATCTGCGCTACATGTTTGATCTGAGTGATGAAAGTATCGTCTGGGCCTATATCGAGAATCCCTACTATCAGTACTTCTGC
GGAGAGAAAGTGTTTCAACACACTTTTCCTATAGACAGAAGCTCTATGAGCAAATTTCGAGAGAGGCTCAAAAAGAAAAAACTCTACAAACTGCTGCAAG
AGACCATCAAAAGCGGTTTTCAAACAAAAGTAATCAAACCCAAAAGTATAGAGTACGCCGTGATTGACTCTACGGTACAGGAGAAAAACATTGCCTACCC
CACAGATGCCAAACTCTATTACAAAGGCATTGTTCTTCTTGCCAAACTGGCCAGGCGTCTGAATATCAGACTCCGACAAAGCTATATCAGAGCAGGAAAG
AAACTCCTGATCAAATACTCCCGCTACAACCATGCCAAACAGTTCAGACGCAAAGCTGCCACACTCAAGAAACTCAAAATAAGACTGGGAAGGGTCTTGA
GAGAAATAGTACGAAAATCCGAAGAGGATGGGATCAGCCTGGACCTGGATGCCAGAATCCTTCTTGAACAGTGCCAAAAGCTCTTTGATCAAAAACGCAA
CTCCAAAAACAAACTCTACAGTTTTCATGAACCTCATACAGCCTGCATCTCAAAAGGCAAAGCACACAAGCGTTATGAGTTTGGCAACAAGTCCACTTTC
ATCACTACCACCAGGGAGTGTTTCATTATTCACGCTGATGCGCATGAAGGCAATCCCTATGACGGACATACGCTGAAAGAGGCACTCGATAAAACAAATG
AGAGTGTATCCGATCTATTCAATAAAAGTATTGATTACCTCTTTACCGATAAGGGGTACAGGGGTCACGGTTATCAAGGTGATACAACTGTACTGATCGA
GACATCTGCAAACAAAAAAAGACACAAGAAGCTCAAACGGAGATCCTCCATAGAAACGGTATTCTCCCATACCAAACAGGATCACCGGATGGGAAGAAAT
TTCCTCATAGGAGAACATGGCAATCTGGTCAATACGATTATGGCAGCCTGTGGATACAATCTAAGGAAAATCTACAACAAGTTCAGGAAGGCATTCGTGA
AAATGCTTTCTGTCTTGTTTTTTATGCTCTTTAGGGAGCAATACAGGGTTCAGTTGGTTCCAAACAGGGCTTAAATCCCGAATAGCATTTTTAGAAATGG
TATAAGGATGTGTTTGGGGTATGATTCTTTTGGATAATTGGATCTGAAAATGGAGTTGTTCACGGGCAAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1353 bp | 450 aa | 122 | 1474 | + | No |
Chemistry : DDE
ORF sequence :
MIQEKQERVTLFDHCKQLSDIIDENHPLVKLANSIDWKSIEEDLSKAYPSTTGHPNKPIRLMVGLHYLRYMFDLSDESIVWAYIENPYYQYFCGEKVFQH
TFPIDRSSMSKFRERLKKKKLYKLLQETIKSGFQTKVIKPKSIEYAVIDSTVQEKNIAYPTDAKLYYKGIVLLAKLARRLNIRLRQSYIRAGKKLLIKYS
RYNHAKQFRRKAATLKKLKIRLGRVLREIVRKSEEDGISLDLDARILLEQCQKLFDQKRNSKNKLYSFHEPHTACISKGKAHKRYEFGNKSTFITTTREC
FIIHADAHEGNPYDGHTLKEALDKTNESVSDLFNKSIDYLFTDKGYRGHGYQGDTTVLIETSANKKRHKKLKRRSSIETVFSHTKQDHRMGRNFLIGEHG
NLVNTIMAACGYNLRKIYNKFRKAFVKMLSVLFFMLFREQYRVQLVPNRA
TFPIDRSSMSKFRERLKKKKLYKLLQETIKSGFQTKVIKPKSIEYAVIDSTVQEKNIAYPTDAKLYYKGIVLLAKLARRLNIRLRQSYIRAGKKLLIKYS
RYNHAKQFRRKAATLKKLKIRLGRVLREIVRKSEEDGISLDLDARILLEQCQKLFDQKRNSKNKLYSFHEPHTACISKGKAHKRYEFGNKSTFITTTREC
FIIHADAHEGNPYDGHTLKEALDKTNESVSDLFNKSIDYLFTDKGYRGHGYQGDTTVLIETSANKKRHKKLKRRSSIETVFSHTKQDHRMGRNFLIGEHG
NLVNTIMAACGYNLRKIYNKFRKAFVKMLSVLFFMLFREQYRVQLVPNRA
Blast result :
Comments
ISSlsp2 is 65% aa similar to ISMisp1.
References
1] ISfinder annotation (2010)
2] Nakagawa,S., Takaki,Y., Shimamura,S., Reysenbach,A.L., Takai,K. and Horikoshi,K. (2007) Proc. Natl. Acad. Sci. U.S.A. 104 (29), 12146-12150
3] Nakagawa,S., Takai,K., Inagaki,F., Hirayama,H., Nunoura,T., Horikoshi,K. and Sako,Y.(2005) Environ. Microbiol. 7 (10), 1619-1632.
2] Nakagawa,S., Takaki,Y., Shimamura,S., Reysenbach,A.L., Takai,K. and Horikoshi,K. (2007) Proc. Natl. Acad. Sci. U.S.A. 104 (29), 12146-12150
3] Nakagawa,S., Takai,K., Inagaki,F., Hirayama,H., Nunoura,T., Horikoshi,K. and Sako,Y.(2005) Environ. Microbiol. 7 (10), 1619-1632.