ISMno22

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011894 ND Methylobacterium nodulans
Methylobacterium nodulans ORS 2060
Methylobacterium nodulans ORS 2060 pMNOD01
Methylobacterium nodulans ORS 2060 pMNOD02
DNA section
IS Length : 1426 bp

Ends


IR Length : 15/24

IRL : gatggggTGATTGGGGTCTTAGCCGAGGGTGGCTGCTCCGTTCGGGATGT
IRR : ----ctcTGATTGGGGTCGTTTAGGTCAAGCTGCTCGTTGTGGTTTCTCC

Insertion site


Left flankDirect repeatRight flankDR Length
GCACCCGACAAAGAGAAGAC0
TTTCCCAACAAAGGACTCTC0
GGATCAAACAAGGACTCTAA0
CTCTGAAACATCTCAGACGC0
TTATCGGACAAAGAGAGGAC0
CCCTCAAACAAAGGCTCTCA0

DNA sequence

GATGGGGTGATTGGGGTCTTAGCCGAGGGTGGCTGCTCCGTTCGGGATGTTGGAACGTGGTCCGTGTTGAGCGGCCACAAGCATCGGGAAGGAGCAGCCG
TGAAGTATTATGCCGGACTGGACGTTTCGCTGGAAGAGACCGCGATCTGCGTTGTCGACGATACGGGTCGGATCGTGCGGGAGGCGCGGGCGGCGAGTGA
GCCTGGCGCGCTGGTGCAGGCGCTGAACCAGATCGGCCTGCCCCTGGAGCGCATCGGCCTGGAAGCGTGCTCGCTGACGGCCTGGCTGCACGACGGCCTG
CGCGAGGCGGGCTTGCCGGCGATCTGCATCGAGACGCGCCAGGCCAATGCCGCGATGAAGACGATGCCCAACAAGACCGACCGCAACGACGCACGCGCCC
TGGCGCAGATCATGCGGACGGGCTGGTTCCGGCAGGTCCATGTCAAGAGCCGTCAGTGCCGGCTGTGGCGTTCGCTGCTGGTGGCGCGCCGCACGGTGCT
CAACGAGATGCGTTCGATCGAGAACGTGGTGCGGGGGATCCTGCGCGAAGCCGGGCTCAAGCTCGGCACGCCTGGCCGTGCAGCCTTCGCCGGCCGCGTA
CGCGAACTGGCCGAGGGCGTGCCCCTGATGACGCAGCTCGTCGAACCGCTCCTGGAGGTGCTGGCCAGCATGCTGACCGCACTCGCCGGCTTGACGAAGC
AGGTCATGGATCTCGTCAAGAAAGAGGCGGTCTGCCAGCGGCTGATGAGCGTGCCGGGCGTCGGCCCCATCACCGCGCTTGCCTTCCGGGCGACGATCGA
CCGGCCCGACCGGTTCAGGCGCTCGCGCGACGTCGGCGCCCATCTCGGTCTGACGCCGGCGCGCTACCAGTCCGGCGAGACCGACATCCAGGGCAAGATC
AGCCGTTGCGGCGACGAACTCGCGCGCACCGCGCTCTACGAGGCGGCGCATACGCTGCTGGTGCGGAGCCAGAAATGGTCGAGCCTGCGCGCCTGGGGGA
TGAAGATCGCCAGGCGTCGCGGCATGGCCCGCGCCCGCGTCGCGGTCGCCCGCAAGCTCGCCGTCATCCTCCATCGCATGTGGAGCGACGGCACCGCGTT
CCGCTGGGGTAAGGAGCCCGCAGAGGGTGCCACGCTCGCAGGATGACGCCGTCACCGCGAAACAGGAGGGCAAAACACCACGCATGAACCCGAAAGGGTG
AACCGGATCGTTCCCGTGGGGACGATGGGCCTGGCGATCTCGTTGAGAGTCCAGAACCTGCGGGTGCAAACCCGCAAGGTCGTGAAACAGATTGAGACGC
CTCGCCCTCCTGACCCCATCATGCGGCGGCCAAGCGCCGACCGCGAAGAGAAGCGTGTGACCCACGGGGCGACACAAGCCGGAGAAACCACAACGAGCAG
CTTGACCTAAACGACCCCAATCAGAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1047 bp348 aa1001146+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

VKYYAGLDVSLEETAICVVDDTGRIVREARAASEPGALVQALNQIGLPLERIGLEACSLTAWLHDGLREAGLPAICIETRQANAAMKTMPNKTDRNDARA
LAQIMRTGWFRQVHVKSRQCRLWRSLLVARRTVLNEMRSIENVVRGILREAGLKLGTPGRAAFAGRVRELAEGVPLMTQLVEPLLEVLASMLTALAGLTK
QVMDLVKKEAVCQRLMSVPGVGPITALAFRATIDRPDRFRRSRDVGAHLGLTPARYQSGETDIQGKISRCGDELARTALYEAAHTLLVRSQKWSSLRAWG
MKIARRRGMARARVAVARKLAVILHRMWSDGTAFRWGKEPAEGATLAG

 

Blast result :
Comments
ISMno22 is 68% aa similar to ISRhru3.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.

2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.