ISUnCu2

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY294226 ND Uncultured bacterium
Uncultured bacterium cosmid gbiox603r
DNA section
IS Length : 1491 bp

Ends


IR Length : 15

IRL : GTCTGTCCTGAACAACTCGCAACCCGTTGATCTGCAATGTGATTTCGGCT
IRR : GTCTGTCCTGAACAATTGCCTCAAGCGGCAGCCAGCGCGACCTGACAGCG

Insertion site


Left flankDirect repeatRight flankDR Length
CGACGTCTCTAGCTGGCCTCCTTTT6

DNA sequence

GTCTGTCCTGAACAACTCGCAACCCGTTGATCTGCAATGTGATTTCGGCTGAAGTGTGGTGCGATATTTGCAAGGAAACAAATACCAGCCCCGCGCTTTC
TTGCAAATTTCGCTGCCCATGAAGCCCCACACCCGCACCGCCCAGACCGCCGAGATGTTCCGTCCTCGCCTGGACGAGTTGCTCAACATGAAGCACCCGC
TGATCCGTCTGGCGGGGCTGATGGACTGGGAACTGGTTGAGTACCACTTCGCTGGTCATTTCACTTCGGGCCGTGGTCGACCCGCTTTGCCTCCACGACT
GATAGCGGGTCTGCTCTACCTTCAGCACGCCAACGATGCTTCTGACGAGATGGTGGTCAACACCTGGCTGGAGAACCCCTACTGGCAGTTCTTCACCGGC
GAGACTTACCTGCAAACGGAGCTGCCCATTGACCCTTCGAGCCTGACTCGCTGGCGACAGCGTATTGGTGAAGAAGGCGTGGAGTTGCTGTTGGCGGTGA
CCATCGAAGCAGCCCGTGCCGCAGGCCTGATCAAGCGCGCCAGCTTGGACAAGGTGATCGTGGACACCACGGTGATGCCCAAGGCCATTGCCCATCCCAC
GGACAGCCGTTTGCTGGAGCGCAGCCGACAACACCTAGTCAAGTTTGCGCAGGACAACGACCTGAGCTTGCGCCAGAACTACAACCGCGAGGCGCCTCGC
TTGGCCACGCAGGTTGGCCGCTACGCCCATGCCAAGCAGTACAAGCGCATGCGCTCAGCGATCAAGACTTTGCGCACACGCGTGGGTCGTGTTCAGCGTG
ACGTGCAGCGCCAACTGGCCAAGCTGCCCGAGCAGGTGCAGGCCAAGGGCCAGGATCTGCTGCAACGCGTGGGCCGCATCCTCACGCAAAAGACCAAAGA
CAAGAACAAGCTGTATGCCCTGCATGCACCCGAGGTTGAATGCATCTCCAAGGGCAAGGCGCGTAACCCCTACGAGTTTGGCGTGAAGGTCACGCTGGCC
ACCACGCTCAAAGAAGGCCTGGTGGTGGGCATGCGCTCCATGCCCGGCAATCCCTACGACGGGCACACGCTGGATGAAACCATTGAGCAAGTCAGCATCC
TGGCCAACCAGCGACCACGCACGGTGATGGTGGACAAAGGCTACAAGGGCGCCGCGGTCGATGGCGTGCAGATCCTCAGATCAGGCCAGCGGCGAGGCGT
GACGCGTACGATGAAGGCGATGATCAAACGGCGCAGCGCCATTGAGCCGACCATCGGACACATGAAGAGCGACGGCAGGCTGGACCGCAATCCGCTCAAG
GGCGCGCTGGGTGATGCGCTGCATGCCGTGCTGTGCGGCGCCGGGCACAACATCCGCCTGCTGCTGAGCCTGTTGAGGCTTTTTGCTGTCTATCTGCGGG
CCATTGTCCTGGCTTGGCTGGGCCGCTCGGCCAGTGGCTACCGCTGTCAGGTCGCGCTGGCTGCCGCTTGAGGCAATTGTTCAGGACAGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1353 bp450 aa1191471+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKPHTRTAQTAEMFRPRLDELLNMKHPLIRLAGLMDWELVEYHFAGHFTSGRGRPALPPRLIAGLLYLQHANDASDEMVVNTWLENPYWQFFTGETYLQT
ELPIDPSSLTRWRQRIGEEGVELLLAVTIEAARAAGLIKRASLDKVIVDTTVMPKAIAHPTDSRLLERSRQHLVKFAQDNDLSLRQNYNREAPRLATQVG
RYAHAKQYKRMRSAIKTLRTRVGRVQRDVQRQLAKLPEQVQAKGQDLLQRVGRILTQKTKDKNKLYALHAPEVECISKGKARNPYEFGVKVTLATTLKEG
LVVGMRSMPGNPYDGHTLDETIEQVSILANQRPRTVMVDKGYKGAAVDGVQILRSGQRRGVTRTMKAMIKRRSAIEPTIGHMKSDGRLDRNPLKGALGDA
LHAVLCGAGHNIRLLLSLLRLFAVYLRAIVLAWLGRSASGYRCQVALAAA

 

Blast result :
Comments
ISUnCu2 is 80% aa similar to ISRso9.
References
1] ISfinder annotation (2010)
2] Stoeckigt,C., Schmeisser,C. and Streit,W.R. (2003) Direct submission GenBank.