ISUnCu2
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY294226 | ND | Uncultured bacterium | Uncultured bacterium cosmid gbiox603r |
DNA section
IS Length : 1491 bp
Ends
IR Length : 15
IRL : GTCTGTCCTGAACAACTCGCAACCCGTTGATCTGCAATGTGATTTCGGCT
IRR : GTCTGTCCTGAACAATTGCCTCAAGCGGCAGCCAGCGCGACCTGACAGCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGACGTCTC | TAGCTG | GCCTCCTTTT | 6 |
DNA sequence
GTCTGTCCTGAACAACTCGCAACCCGTTGATCTGCAATGTGATTTCGGCTGAAGTGTGGTGCGATATTTGCAAGGAAACAAATACCAGCCCCGCGCTTTC
TTGCAAATTTCGCTGCCCATGAAGCCCCACACCCGCACCGCCCAGACCGCCGAGATGTTCCGTCCTCGCCTGGACGAGTTGCTCAACATGAAGCACCCGC
TGATCCGTCTGGCGGGGCTGATGGACTGGGAACTGGTTGAGTACCACTTCGCTGGTCATTTCACTTCGGGCCGTGGTCGACCCGCTTTGCCTCCACGACT
GATAGCGGGTCTGCTCTACCTTCAGCACGCCAACGATGCTTCTGACGAGATGGTGGTCAACACCTGGCTGGAGAACCCCTACTGGCAGTTCTTCACCGGC
GAGACTTACCTGCAAACGGAGCTGCCCATTGACCCTTCGAGCCTGACTCGCTGGCGACAGCGTATTGGTGAAGAAGGCGTGGAGTTGCTGTTGGCGGTGA
CCATCGAAGCAGCCCGTGCCGCAGGCCTGATCAAGCGCGCCAGCTTGGACAAGGTGATCGTGGACACCACGGTGATGCCCAAGGCCATTGCCCATCCCAC
GGACAGCCGTTTGCTGGAGCGCAGCCGACAACACCTAGTCAAGTTTGCGCAGGACAACGACCTGAGCTTGCGCCAGAACTACAACCGCGAGGCGCCTCGC
TTGGCCACGCAGGTTGGCCGCTACGCCCATGCCAAGCAGTACAAGCGCATGCGCTCAGCGATCAAGACTTTGCGCACACGCGTGGGTCGTGTTCAGCGTG
ACGTGCAGCGCCAACTGGCCAAGCTGCCCGAGCAGGTGCAGGCCAAGGGCCAGGATCTGCTGCAACGCGTGGGCCGCATCCTCACGCAAAAGACCAAAGA
CAAGAACAAGCTGTATGCCCTGCATGCACCCGAGGTTGAATGCATCTCCAAGGGCAAGGCGCGTAACCCCTACGAGTTTGGCGTGAAGGTCACGCTGGCC
ACCACGCTCAAAGAAGGCCTGGTGGTGGGCATGCGCTCCATGCCCGGCAATCCCTACGACGGGCACACGCTGGATGAAACCATTGAGCAAGTCAGCATCC
TGGCCAACCAGCGACCACGCACGGTGATGGTGGACAAAGGCTACAAGGGCGCCGCGGTCGATGGCGTGCAGATCCTCAGATCAGGCCAGCGGCGAGGCGT
GACGCGTACGATGAAGGCGATGATCAAACGGCGCAGCGCCATTGAGCCGACCATCGGACACATGAAGAGCGACGGCAGGCTGGACCGCAATCCGCTCAAG
GGCGCGCTGGGTGATGCGCTGCATGCCGTGCTGTGCGGCGCCGGGCACAACATCCGCCTGCTGCTGAGCCTGTTGAGGCTTTTTGCTGTCTATCTGCGGG
CCATTGTCCTGGCTTGGCTGGGCCGCTCGGCCAGTGGCTACCGCTGTCAGGTCGCGCTGGCTGCCGCTTGAGGCAATTGTTCAGGACAGAC
TTGCAAATTTCGCTGCCCATGAAGCCCCACACCCGCACCGCCCAGACCGCCGAGATGTTCCGTCCTCGCCTGGACGAGTTGCTCAACATGAAGCACCCGC
TGATCCGTCTGGCGGGGCTGATGGACTGGGAACTGGTTGAGTACCACTTCGCTGGTCATTTCACTTCGGGCCGTGGTCGACCCGCTTTGCCTCCACGACT
GATAGCGGGTCTGCTCTACCTTCAGCACGCCAACGATGCTTCTGACGAGATGGTGGTCAACACCTGGCTGGAGAACCCCTACTGGCAGTTCTTCACCGGC
GAGACTTACCTGCAAACGGAGCTGCCCATTGACCCTTCGAGCCTGACTCGCTGGCGACAGCGTATTGGTGAAGAAGGCGTGGAGTTGCTGTTGGCGGTGA
CCATCGAAGCAGCCCGTGCCGCAGGCCTGATCAAGCGCGCCAGCTTGGACAAGGTGATCGTGGACACCACGGTGATGCCCAAGGCCATTGCCCATCCCAC
GGACAGCCGTTTGCTGGAGCGCAGCCGACAACACCTAGTCAAGTTTGCGCAGGACAACGACCTGAGCTTGCGCCAGAACTACAACCGCGAGGCGCCTCGC
TTGGCCACGCAGGTTGGCCGCTACGCCCATGCCAAGCAGTACAAGCGCATGCGCTCAGCGATCAAGACTTTGCGCACACGCGTGGGTCGTGTTCAGCGTG
ACGTGCAGCGCCAACTGGCCAAGCTGCCCGAGCAGGTGCAGGCCAAGGGCCAGGATCTGCTGCAACGCGTGGGCCGCATCCTCACGCAAAAGACCAAAGA
CAAGAACAAGCTGTATGCCCTGCATGCACCCGAGGTTGAATGCATCTCCAAGGGCAAGGCGCGTAACCCCTACGAGTTTGGCGTGAAGGTCACGCTGGCC
ACCACGCTCAAAGAAGGCCTGGTGGTGGGCATGCGCTCCATGCCCGGCAATCCCTACGACGGGCACACGCTGGATGAAACCATTGAGCAAGTCAGCATCC
TGGCCAACCAGCGACCACGCACGGTGATGGTGGACAAAGGCTACAAGGGCGCCGCGGTCGATGGCGTGCAGATCCTCAGATCAGGCCAGCGGCGAGGCGT
GACGCGTACGATGAAGGCGATGATCAAACGGCGCAGCGCCATTGAGCCGACCATCGGACACATGAAGAGCGACGGCAGGCTGGACCGCAATCCGCTCAAG
GGCGCGCTGGGTGATGCGCTGCATGCCGTGCTGTGCGGCGCCGGGCACAACATCCGCCTGCTGCTGAGCCTGTTGAGGCTTTTTGCTGTCTATCTGCGGG
CCATTGTCCTGGCTTGGCTGGGCCGCTCGGCCAGTGGCTACCGCTGTCAGGTCGCGCTGGCTGCCGCTTGAGGCAATTGTTCAGGACAGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1353 bp | 450 aa | 119 | 1471 | + | No |
Chemistry : DDE
ORF sequence :
MKPHTRTAQTAEMFRPRLDELLNMKHPLIRLAGLMDWELVEYHFAGHFTSGRGRPALPPRLIAGLLYLQHANDASDEMVVNTWLENPYWQFFTGETYLQT
ELPIDPSSLTRWRQRIGEEGVELLLAVTIEAARAAGLIKRASLDKVIVDTTVMPKAIAHPTDSRLLERSRQHLVKFAQDNDLSLRQNYNREAPRLATQVG
RYAHAKQYKRMRSAIKTLRTRVGRVQRDVQRQLAKLPEQVQAKGQDLLQRVGRILTQKTKDKNKLYALHAPEVECISKGKARNPYEFGVKVTLATTLKEG
LVVGMRSMPGNPYDGHTLDETIEQVSILANQRPRTVMVDKGYKGAAVDGVQILRSGQRRGVTRTMKAMIKRRSAIEPTIGHMKSDGRLDRNPLKGALGDA
LHAVLCGAGHNIRLLLSLLRLFAVYLRAIVLAWLGRSASGYRCQVALAAA
ELPIDPSSLTRWRQRIGEEGVELLLAVTIEAARAAGLIKRASLDKVIVDTTVMPKAIAHPTDSRLLERSRQHLVKFAQDNDLSLRQNYNREAPRLATQVG
RYAHAKQYKRMRSAIKTLRTRVGRVQRDVQRQLAKLPEQVQAKGQDLLQRVGRILTQKTKDKNKLYALHAPEVECISKGKARNPYEFGVKVTLATTLKEG
LVVGMRSMPGNPYDGHTLDETIEQVSILANQRPRTVMVDKGYKGAAVDGVQILRSGQRRGVTRTMKAMIKRRSAIEPTIGHMKSDGRLDRNPLKGALGDA
LHAVLCGAGHNIRLLLSLLRLFAVYLRAIVLAWLGRSASGYRCQVALAAA
Blast result :
Comments
ISUnCu2 is 80% aa similar to ISRso9.
References
1] ISfinder annotation (2010)
2] Stoeckigt,C., Schmeisser,C. and Streit,W.R. (2003) Direct submission GenBank.
2] Stoeckigt,C., Schmeisser,C. and Streit,W.R. (2003) Direct submission GenBank.