ISRhsp1
- Family IS5
- Group IS5
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009430 | ND | Rhodobacter sphaeroides | Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02 |
DNA section
IS Length : 1486 bp
Ends
IR Length : 18/21
IRL : GTCCGGCCTGAACAACGGCGAAGCGGTTGATCCAAGGCGATAAACCCGAG
IRR : GTTCAGCCTGAACAACGCGATCAGGCGGCCGCGTGACTGTAGCCGCGAGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGACGGTCCT | TCAGGA | GGCTCACGCC | 6 |
DNA sequence
GTCCGGCCTGAACAACGGCGAAGCGGTTGATCCAAGGCGATAAACCCGAGGTTTCTGTCGCCATGGCCTGCAGGATTTCATAGGATTCTGCCCGGAACCC
TGCAATTTCGGTCTGCCGCATGAAGCACCGTCCCCGTCCACCCGAGCAGAACGACCTCTTCCGGCCGCGCCTGGTCGACATGATCGACATGCGTCACGAG
CTGGTCACGCTGTCGGCCCTGATCGACTGGGAGTTCTTCGAACGCGAATGGGCCGGGTTCTTCCCGTCGACGACCGGACGACCGGCGATATCGCCGCGAC
TCGTGGCGGGGCTGCTCTATCTGCAGCACGCGTTCCGGCTGTCGGACGAGGCTGTGGTCGCGCGCTGGGTCGAGAACCCTTACTTTCAGCACTTCACCGG
CGAGACCTTCTTTCAGCACAAGCCGCCGATCGATCCCACCTCGCTCATCCGGTGGCGGAAGCGGATCGGCGAAGAGGGTGTCGAGTGGCTGCTGACCAAG
ACCATCGAGGCCGGGCGGGAATCGGGTGCTGTCGAGGACGCGAGCCTGGACGAGATCGCCATCGACACGACCGTGATGGAGAAGAACATCTCGCACCCGA
CGGACTCCCGGCTCTACGAGCGGGCGCGCAGCCAACTGGTGGCCCTGGCCCGGGACGCCGGCATCGAGTTGCGGCAGAGCTACGCGCGCCTTGCGCCGCG
GCTGGCGGCGCAGGTCGGGCGTTACGCCCATGCCAAGCAGTTCCGGCGCATGCGCAAGGCGTTGCGAACGCTGAAGGGTTACACCGGCCGCGTGATGCGG
GACATCCGGCGGCAGCTCGACGAAATCCCCGAGGGGCCGCTGCGCGAGCGTGTGCTCGACAAGCTCGTGCTGGTCTCGCGGCTGCTGCACCAGCGGCCGA
AGGATCCCGGCAAGATCTATTCACTGCACGAGCCCGAGGTCGACTGCATCTCGAAAGGCAAGGCCCGCGTGCGATACGAGTTCGGCACCAAGGTCAGCAT
CGCAACCACGCTGAAGGGCGGCTTCGTCGTCGGCATGCGGTCGCTGCCGGGGAACCCCTACGACGGCCACACCCTCGGCGAGGCCCTGGAGCAGGTCGGC
ATCCTCACCGGCCACCCGCCCAAGCGCGCCGTCGTCGATCGCGGCTACAAGGGCCACGGCGTCGAGCACACCCAGGTCCTGATCAGCGGAACCCGCCGCG
GCCTCACACCGGCGCTCGCGAAGGCGCTCCGCCGACGCAGCAGCATCGAGCCCGAGATCGGCCACATGAAGGCCGACGGAAGGCTCGCGCGCTGCTTTCT
GCAAGGCACCTTCGGCGATGCGCTCTTCGCCGTCCTCTGCGGCTGCGGGCACAACATCCGCAAGATCCTCGCCCATCTGAGGAAGCTTCTTGCCGCCGTC
ATTACCCTCGTTCTGGCGATGATCCGGCAGGAGCACGCTCGCGGCTACAGTCACGCGGCCGCCTGATCGCGTTGTTCAGGCTGAAC
TGCAATTTCGGTCTGCCGCATGAAGCACCGTCCCCGTCCACCCGAGCAGAACGACCTCTTCCGGCCGCGCCTGGTCGACATGATCGACATGCGTCACGAG
CTGGTCACGCTGTCGGCCCTGATCGACTGGGAGTTCTTCGAACGCGAATGGGCCGGGTTCTTCCCGTCGACGACCGGACGACCGGCGATATCGCCGCGAC
TCGTGGCGGGGCTGCTCTATCTGCAGCACGCGTTCCGGCTGTCGGACGAGGCTGTGGTCGCGCGCTGGGTCGAGAACCCTTACTTTCAGCACTTCACCGG
CGAGACCTTCTTTCAGCACAAGCCGCCGATCGATCCCACCTCGCTCATCCGGTGGCGGAAGCGGATCGGCGAAGAGGGTGTCGAGTGGCTGCTGACCAAG
ACCATCGAGGCCGGGCGGGAATCGGGTGCTGTCGAGGACGCGAGCCTGGACGAGATCGCCATCGACACGACCGTGATGGAGAAGAACATCTCGCACCCGA
CGGACTCCCGGCTCTACGAGCGGGCGCGCAGCCAACTGGTGGCCCTGGCCCGGGACGCCGGCATCGAGTTGCGGCAGAGCTACGCGCGCCTTGCGCCGCG
GCTGGCGGCGCAGGTCGGGCGTTACGCCCATGCCAAGCAGTTCCGGCGCATGCGCAAGGCGTTGCGAACGCTGAAGGGTTACACCGGCCGCGTGATGCGG
GACATCCGGCGGCAGCTCGACGAAATCCCCGAGGGGCCGCTGCGCGAGCGTGTGCTCGACAAGCTCGTGCTGGTCTCGCGGCTGCTGCACCAGCGGCCGA
AGGATCCCGGCAAGATCTATTCACTGCACGAGCCCGAGGTCGACTGCATCTCGAAAGGCAAGGCCCGCGTGCGATACGAGTTCGGCACCAAGGTCAGCAT
CGCAACCACGCTGAAGGGCGGCTTCGTCGTCGGCATGCGGTCGCTGCCGGGGAACCCCTACGACGGCCACACCCTCGGCGAGGCCCTGGAGCAGGTCGGC
ATCCTCACCGGCCACCCGCCCAAGCGCGCCGTCGTCGATCGCGGCTACAAGGGCCACGGCGTCGAGCACACCCAGGTCCTGATCAGCGGAACCCGCCGCG
GCCTCACACCGGCGCTCGCGAAGGCGCTCCGCCGACGCAGCAGCATCGAGCCCGAGATCGGCCACATGAAGGCCGACGGAAGGCTCGCGCGCTGCTTTCT
GCAAGGCACCTTCGGCGATGCGCTCTTCGCCGTCCTCTGCGGCTGCGGGCACAACATCCGCAAGATCCTCGCCCATCTGAGGAAGCTTCTTGCCGCCGTC
ATTACCCTCGTTCTGGCGATGATCCGGCAGGAGCACGCTCGCGGCTACAGTCACGCGGCCGCCTGATCGCGTTGTTCAGGCTGAAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1347 bp | 448 aa | 120 | 1466 | + | No |
Chemistry : DDE
ORF sequence :
MKHRPRPPEQNDLFRPRLVDMIDMRHELVTLSALIDWEFFEREWAGFFPSTTGRPAISPRLVAGLLYLQHAFRLSDEAVVARWVENPYFQHFTGETFFQH
KPPIDPTSLIRWRKRIGEEGVEWLLTKTIEAGRESGAVEDASLDEIAIDTTVMEKNISHPTDSRLYERARSQLVALARDAGIELRQSYARLAPRLAAQVG
RYAHAKQFRRMRKALRTLKGYTGRVMRDIRRQLDEIPEGPLRERVLDKLVLVSRLLHQRPKDPGKIYSLHEPEVDCISKGKARVRYEFGTKVSIATTLKG
GFVVGMRSLPGNPYDGHTLGEALEQVGILTGHPPKRAVVDRGYKGHGVEHTQVLISGTRRGLTPALAKALRRRSSIEPEIGHMKADGRLARCFLQGTFGD
ALFAVLCGCGHNIRKILAHLRKLLAAVITLVLAMIRQEHARGYSHAAA
KPPIDPTSLIRWRKRIGEEGVEWLLTKTIEAGRESGAVEDASLDEIAIDTTVMEKNISHPTDSRLYERARSQLVALARDAGIELRQSYARLAPRLAAQVG
RYAHAKQFRRMRKALRTLKGYTGRVMRDIRRQLDEIPEGPLRERVLDKLVLVSRLLHQRPKDPGKIYSLHEPEVDCISKGKARVRYEFGTKVSIATTLKG
GFVVGMRSLPGNPYDGHTLGEALEQVGILTGHPPKRAVVDRGYKGHGVEHTQVLISGTRRGLTPALAKALRRRSSIEPEIGHMKADGRLARCFLQGTFGD
ALFAVLCGCGHNIRKILAHLRKLLAAVITLVLAMIRQEHARGYSHAAA
Blast result :
Comments
ISRhsp1 is 85% aa similar to ISPhae1.
References
1] Isfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Richardson,P., Mackenzie,C., Choudhary,M., Donohue,T.J. and Kaplan,S. (2007) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Richardson,P., Mackenzie,C., Choudhary,M., Donohue,T.J. and Kaplan,S. (2007) Direct submission GenBank.