ISGlo4

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010815 ND Geobacter lovleyi
Geobacter lovleyi SZ plasmid pGLOV01
DNA section
IS Length : 1465 bp

Ends


IR Length : 12

IRL : GTCGTCCCTGAAGCATTATAACAACTTGTAATTATTGATTTGTATTTGCA
IRR : GTCGTCCCTGAAAAAGTCCGGAATTTGCTCAGACGGTGTTGAGTTGAATG

Insertion site


Left flankDirect repeatRight flankDR Length
ACAAAGAAAGTATCTCAGCACA2

DNA sequence

GTCGTCCCTGAAGCATTATAACAACTTGTAATTATTGATTTGTATTTGCATTATACTTTGATAAAATCACCAGAAATAGTAGTTCATCCTTCAATTTCCG
GTGATTTCATGCAACCCAAAGTTCAGATTTCTGACCAGGGCGACTTGTTTCGTTCCCGCCTTGATCAGATGCTCGATCGCCAGCATGAACTGTATCGTCT
GGCAGATCAAATCGACTGGCAGTTCTTTGAAAGAGAGTTTGGCCCCCTGTACTCAGTCAAGATGGGCCGTCCCGGTGTACCGATTCGTTTGCTGGTTGGT
CTGCACTACCTGAAGCACGCCTTTAACGAATCAGATGAATCAGTCGTTGCCCGCTTTGTCGAGAATCCGTACTGGCAGTACTTCTGTGGTTTTGAATTCT
TCCAGCACCGTCTGCCCCTTGATCCCACCACCCTGGTAAAGTGGAGAAAGCGGATCGGCTCCAAAGGGGTAGAGAAACTGCTACAGGCAACCATTGCAAC
CGCTGTGCGTAGAAACGACATCACACCGCAGTCACTTGAGCGAGTCAACGTAGACACCACGGTACAGGAAAAGGCCATTGCCTATCCCACTGATGCCAGA
CTGTATCACAAGGCCCGGGTTGCACTGGTCAAGCTTGCCAAAGAACGTGGCATTCAGTTGCGTCAGAGCTATGAGCGTCTGGGCAAGAAGGCCTACATCA
AGCATGGACGTTACAAGCATGCCCGTCAGATGAATCGGGCCAAGCGGGAGCTGAAACGTCTCAAGATCTATCTGGGCCGAGTCATCAGGGACATTTTCAG
AAAGATCGCAAATCCTGATCAGACACTGACTACCCTGCTTGAACGGTCCCGCAGAATTTTCAACCAGAAGCAGCATGACAAAAACAAGCTGTACAGCCTG
CATGCTCCAGAAGTCAGCTGCATCGCCAAGGGCAAGAGTCACAAGAAATACGAATTTGGCTGCAAGGTATCCATTGTCAGCACATCAAAAGACAACTGGA
TCATCGGTACCCAGGCCAAGGATGGTAATCCGTATGATGGCCATACGCTCAAGGGAGCGCTGAAACAGGCAGCTCAGATAACCGGCATCACTCCAGGCAA
TGCCTACTGTGACAAAGGCTACAAGGGAGTACCCAGCTCACTGAACGGAACCACCGTCCACTTAGCCAACAAACGCAAGAGCAGCATGAAGCCCAGTGAA
TGGGCATGGTACAAGAGACGCAGTGCCATTGAACCGATCATCGGTCACCTGAAAGTTGATCACCGGATGGACAGAAACCACCTCAAGGGTGCAGAAGGTG
ACAAGATCAACGCCCTGCTTGCCGCTTGTGGGTACAACCTGAGGAAGCTGCTCAAGCTCCTCTTATTTTGGCTTGTAAAAGAACGGACATTTCTCAGCTG
GGGGAGACTATCCCCCATTCAACTCAACACCGTCTGAGCAAATTCCGGACTTTTTCAGGGACGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1329 bp442 aa1091437+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQPKVQISDQGDLFRSRLDQMLDRQHELYRLADQIDWQFFEREFGPLYSVKMGRPGVPIRLLVGLHYLKHAFNESDESVVARFVENPYWQYFCGFEFFQH
RLPLDPTTLVKWRKRIGSKGVEKLLQATIATAVRRNDITPQSLERVNVDTTVQEKAIAYPTDARLYHKARVALVKLAKERGIQLRQSYERLGKKAYIKHG
RYKHARQMNRAKRELKRLKIYLGRVIRDIFRKIANPDQTLTTLLERSRRIFNQKQHDKNKLYSLHAPEVSCIAKGKSHKKYEFGCKVSIVSTSKDNWIIG
TQAKDGNPYDGHTLKGALKQAAQITGITPGNAYCDKGYKGVPSSLNGTTVHLANKRKSSMKPSEWAWYKRRSAIEPIIGHLKVDHRMDRNHLKGAEGDKI
NALLAACGYNLRKLLKLLLFWLVKERTFLSWGRLSPIQLNTV

 

Blast result :
Comments
ISGlo4 is 83% aa similar to ISGme3.
References
1] ISfinder annotation (2010)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Meincke,L., Brettin,T., Detter,J.C., Han,C., Tapia,R., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Sung,Y., Fletcher,K.E., Ritalahti,K.M., Loeffler,F.E. and Richardson,P. (2008) Direct submission GenBank.