ISGlo4
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010815 | ND | Geobacter lovleyi | Geobacter lovleyi SZ plasmid pGLOV01 |
DNA section
IS Length : 1465 bp
Ends
IR Length : 12
IRL : GTCGTCCCTGAAGCATTATAACAACTTGTAATTATTGATTTGTATTTGCA
IRR : GTCGTCCCTGAAAAAGTCCGGAATTTGCTCAGACGGTGTTGAGTTGAATG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACAAAGAAAG | TA | TCTCAGCACA | 2 |
DNA sequence
GTCGTCCCTGAAGCATTATAACAACTTGTAATTATTGATTTGTATTTGCATTATACTTTGATAAAATCACCAGAAATAGTAGTTCATCCTTCAATTTCCG
GTGATTTCATGCAACCCAAAGTTCAGATTTCTGACCAGGGCGACTTGTTTCGTTCCCGCCTTGATCAGATGCTCGATCGCCAGCATGAACTGTATCGTCT
GGCAGATCAAATCGACTGGCAGTTCTTTGAAAGAGAGTTTGGCCCCCTGTACTCAGTCAAGATGGGCCGTCCCGGTGTACCGATTCGTTTGCTGGTTGGT
CTGCACTACCTGAAGCACGCCTTTAACGAATCAGATGAATCAGTCGTTGCCCGCTTTGTCGAGAATCCGTACTGGCAGTACTTCTGTGGTTTTGAATTCT
TCCAGCACCGTCTGCCCCTTGATCCCACCACCCTGGTAAAGTGGAGAAAGCGGATCGGCTCCAAAGGGGTAGAGAAACTGCTACAGGCAACCATTGCAAC
CGCTGTGCGTAGAAACGACATCACACCGCAGTCACTTGAGCGAGTCAACGTAGACACCACGGTACAGGAAAAGGCCATTGCCTATCCCACTGATGCCAGA
CTGTATCACAAGGCCCGGGTTGCACTGGTCAAGCTTGCCAAAGAACGTGGCATTCAGTTGCGTCAGAGCTATGAGCGTCTGGGCAAGAAGGCCTACATCA
AGCATGGACGTTACAAGCATGCCCGTCAGATGAATCGGGCCAAGCGGGAGCTGAAACGTCTCAAGATCTATCTGGGCCGAGTCATCAGGGACATTTTCAG
AAAGATCGCAAATCCTGATCAGACACTGACTACCCTGCTTGAACGGTCCCGCAGAATTTTCAACCAGAAGCAGCATGACAAAAACAAGCTGTACAGCCTG
CATGCTCCAGAAGTCAGCTGCATCGCCAAGGGCAAGAGTCACAAGAAATACGAATTTGGCTGCAAGGTATCCATTGTCAGCACATCAAAAGACAACTGGA
TCATCGGTACCCAGGCCAAGGATGGTAATCCGTATGATGGCCATACGCTCAAGGGAGCGCTGAAACAGGCAGCTCAGATAACCGGCATCACTCCAGGCAA
TGCCTACTGTGACAAAGGCTACAAGGGAGTACCCAGCTCACTGAACGGAACCACCGTCCACTTAGCCAACAAACGCAAGAGCAGCATGAAGCCCAGTGAA
TGGGCATGGTACAAGAGACGCAGTGCCATTGAACCGATCATCGGTCACCTGAAAGTTGATCACCGGATGGACAGAAACCACCTCAAGGGTGCAGAAGGTG
ACAAGATCAACGCCCTGCTTGCCGCTTGTGGGTACAACCTGAGGAAGCTGCTCAAGCTCCTCTTATTTTGGCTTGTAAAAGAACGGACATTTCTCAGCTG
GGGGAGACTATCCCCCATTCAACTCAACACCGTCTGAGCAAATTCCGGACTTTTTCAGGGACGAC
GTGATTTCATGCAACCCAAAGTTCAGATTTCTGACCAGGGCGACTTGTTTCGTTCCCGCCTTGATCAGATGCTCGATCGCCAGCATGAACTGTATCGTCT
GGCAGATCAAATCGACTGGCAGTTCTTTGAAAGAGAGTTTGGCCCCCTGTACTCAGTCAAGATGGGCCGTCCCGGTGTACCGATTCGTTTGCTGGTTGGT
CTGCACTACCTGAAGCACGCCTTTAACGAATCAGATGAATCAGTCGTTGCCCGCTTTGTCGAGAATCCGTACTGGCAGTACTTCTGTGGTTTTGAATTCT
TCCAGCACCGTCTGCCCCTTGATCCCACCACCCTGGTAAAGTGGAGAAAGCGGATCGGCTCCAAAGGGGTAGAGAAACTGCTACAGGCAACCATTGCAAC
CGCTGTGCGTAGAAACGACATCACACCGCAGTCACTTGAGCGAGTCAACGTAGACACCACGGTACAGGAAAAGGCCATTGCCTATCCCACTGATGCCAGA
CTGTATCACAAGGCCCGGGTTGCACTGGTCAAGCTTGCCAAAGAACGTGGCATTCAGTTGCGTCAGAGCTATGAGCGTCTGGGCAAGAAGGCCTACATCA
AGCATGGACGTTACAAGCATGCCCGTCAGATGAATCGGGCCAAGCGGGAGCTGAAACGTCTCAAGATCTATCTGGGCCGAGTCATCAGGGACATTTTCAG
AAAGATCGCAAATCCTGATCAGACACTGACTACCCTGCTTGAACGGTCCCGCAGAATTTTCAACCAGAAGCAGCATGACAAAAACAAGCTGTACAGCCTG
CATGCTCCAGAAGTCAGCTGCATCGCCAAGGGCAAGAGTCACAAGAAATACGAATTTGGCTGCAAGGTATCCATTGTCAGCACATCAAAAGACAACTGGA
TCATCGGTACCCAGGCCAAGGATGGTAATCCGTATGATGGCCATACGCTCAAGGGAGCGCTGAAACAGGCAGCTCAGATAACCGGCATCACTCCAGGCAA
TGCCTACTGTGACAAAGGCTACAAGGGAGTACCCAGCTCACTGAACGGAACCACCGTCCACTTAGCCAACAAACGCAAGAGCAGCATGAAGCCCAGTGAA
TGGGCATGGTACAAGAGACGCAGTGCCATTGAACCGATCATCGGTCACCTGAAAGTTGATCACCGGATGGACAGAAACCACCTCAAGGGTGCAGAAGGTG
ACAAGATCAACGCCCTGCTTGCCGCTTGTGGGTACAACCTGAGGAAGCTGCTCAAGCTCCTCTTATTTTGGCTTGTAAAAGAACGGACATTTCTCAGCTG
GGGGAGACTATCCCCCATTCAACTCAACACCGTCTGAGCAAATTCCGGACTTTTTCAGGGACGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1329 bp | 442 aa | 109 | 1437 | + | No |
Chemistry : DDE
ORF sequence :
MQPKVQISDQGDLFRSRLDQMLDRQHELYRLADQIDWQFFEREFGPLYSVKMGRPGVPIRLLVGLHYLKHAFNESDESVVARFVENPYWQYFCGFEFFQH
RLPLDPTTLVKWRKRIGSKGVEKLLQATIATAVRRNDITPQSLERVNVDTTVQEKAIAYPTDARLYHKARVALVKLAKERGIQLRQSYERLGKKAYIKHG
RYKHARQMNRAKRELKRLKIYLGRVIRDIFRKIANPDQTLTTLLERSRRIFNQKQHDKNKLYSLHAPEVSCIAKGKSHKKYEFGCKVSIVSTSKDNWIIG
TQAKDGNPYDGHTLKGALKQAAQITGITPGNAYCDKGYKGVPSSLNGTTVHLANKRKSSMKPSEWAWYKRRSAIEPIIGHLKVDHRMDRNHLKGAEGDKI
NALLAACGYNLRKLLKLLLFWLVKERTFLSWGRLSPIQLNTV
RLPLDPTTLVKWRKRIGSKGVEKLLQATIATAVRRNDITPQSLERVNVDTTVQEKAIAYPTDARLYHKARVALVKLAKERGIQLRQSYERLGKKAYIKHG
RYKHARQMNRAKRELKRLKIYLGRVIRDIFRKIANPDQTLTTLLERSRRIFNQKQHDKNKLYSLHAPEVSCIAKGKSHKKYEFGCKVSIVSTSKDNWIIG
TQAKDGNPYDGHTLKGALKQAAQITGITPGNAYCDKGYKGVPSSLNGTTVHLANKRKSSMKPSEWAWYKRRSAIEPIIGHLKVDHRMDRNHLKGAEGDKI
NALLAACGYNLRKLLKLLLFWLVKERTFLSWGRLSPIQLNTV
Blast result :
Comments
ISGlo4 is 83% aa similar to ISGme3.
References
1] ISfinder annotation (2010)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Meincke,L., Brettin,T., Detter,J.C., Han,C., Tapia,R., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Sung,Y., Fletcher,K.E., Ritalahti,K.M., Loeffler,F.E. and Richardson,P. (2008) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Meincke,L., Brettin,T., Detter,J.C., Han,C., Tapia,R., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Sung,Y., Fletcher,K.E., Ritalahti,K.M., Loeffler,F.E. and Richardson,P. (2008) Direct submission GenBank.