ISBpl1

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABQC02000016 ND Bacteroides plebeius
Bacteroides plebeius DSM 17135
DNA section
IS Length : 1427 bp

Ends


IR Length : 13

IRL : GTCGTCCCTTAAAGTACCCTTTTCCTGCTAATAGTCAATATATTAATGGC
IRR : GTCGTCCCTTAAAAAGTGCCCATCTGCGGAATATTGTACGGAAACAGTAT

Insertion site


Left flankDirect repeatRight flankDR Length
GTCAAGTAAATATTTAATAATTTTCA6
ATCCCCTATCTATATAACAATTCTTT6

DNA sequence

GTCGTCCCTTAAAGTACCCTTTTCCTGCTAATAGTCAATATATTAATGGCTAAATTTCTTTGATATATCTGCAAGTTTTTGTACCTTTATGGTTGAAAAC
TTGCAGATAATATGATAAAAACCACCTTGTCCCAGCCCTCTCTGTTCAGTTCGTTGGCAGACCAACTGAACCAAAAGCATCCCTTGTATCTGCTTGCCGA
CAAGATTGACTGGCACCGTTTCGAGGAAGCTTTCTCTCCGCTGTATTGTGCAGACAACGGGCGTCCTGCCAAACCCGTCCGTTTGATGTGCGGACTTCTG
ATTCTTAAACATGTCCGTAACCTTTCCGATGAATCGGTTGTTGAGCAATGGAGTGAGAATGCTTATTACCAGTACTTTTGCGGTATGTTGGAGTTCACGC
CATCCTATCCCTGCAATGCAAGCGAACTGGTACACTTCCGCAAGCGTATCGGTGAGAAGGGTTTGGAACTGATTCTGTCAGAAAGCATACGTGTCAATCA
ACAGGATGATGACCGGGACCATCACGACACGGCCTTCATCGACTCCACGGTACAGGAAAAGAACGTGACTTATCCCACGGATGCCAAGTTGCATAAAAAG
ATAATCCGCAAAGTGTTGTCCATCGTAAAATCCTTAGACCTTCCTTTGCGCCAGAGCTACACTTTCACCCTTAAGAAGATTTACCGTGACCAACGCTTCC
GTAACCATCCGAAAAACCGCAGCAAGGCACTGAAGGCCGACAGACGGCTACGCACCATTGCGGGAAGGCTTGTCAGGGAACTGAAGCGTAACCTGAGTGG
AAACCATGACTATGACTCTCAGCTCGCCCTCTTTGAGCGGGTTCTTTCACAGAAACGTAACTCTCCGGGGAAAATCTATTCCCTGCATGAGCCGGAAGTA
CAGTGTATCAGCAAGGGGAAGGAACATAAGAAGTACGAATTTGGGAACAAGGTCTCAATCATCCGCTCAATTACCGGAATTATCCTGGGGGCCAAGTCCT
TCCGGAACGAATATGACGGACACACCATTGAAGACTCCCTCTTACAGGTGAAACGAATTACCGGAAAGAGAATCAGGAGACTGGCAGGAGACAGGGGTTA
CAGGGGAAAGAAAGAAGTTTGCGGCACTCAAATATTGATACCTGATGTTCCAAACCGGAAAGACAGTTATTATACCCGCAGGAAGAAACATAAGCTTTTC
TGCAAGCGTGCGGGAATAGAGCCGACTATCGGGCATTTGAAATCAGATTTTCGTTTAGGACGCAACTTTTATAAAGGGGTATTCGGTGATACTGTCAATC
TGCTTTTAGCTGCCGCCGCATACAACTTCAAAAGAGCCATGAGGACTCTTTTGTGGCTTATTGAAAAAATCTGCGGGATACTGTTTCCGTACAATATTCC
GCAGATGGGCACTTTTTAAGGGACGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1308 bp435 aa1121419+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIKTTLSQPSLFSSLADQLNQKHPLYLLADKIDWHRFEEAFSPLYCADNGRPAKPVRLMCGLLILKHVRNLSDESVVEQWSENAYYQYFCGMLEFTPSYP
CNASELVHFRKRIGEKGLELILSESIRVNQQDDDRDHHDTAFIDSTVQEKNVTYPTDAKLHKKIIRKVLSIVKSLDLPLRQSYTFTLKKIYRDQRFRNHP
KNRSKALKADRRLRTIAGRLVRELKRNLSGNHDYDSQLALFERVLSQKRNSPGKIYSLHEPEVQCISKGKEHKKYEFGNKVSIIRSITGIILGAKSFRNE
YDGHTIEDSLLQVKRITGKRIRRLAGDRGYRGKKEVCGTQILIPDVPNRKDSYYTRRKKHKLFCKRAGIEPTIGHLKSDFRLGRNFYKGVFGDTVNLLLA
AAAYNFKRAMRTLLWLIEKICGILFPYNIPQMGTF

 

Blast result :
Comments
ISBpl1 is 84% aa similar to ISPg7.
References
1] ISfinder annotation (2010)
2] Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D. and Gordon,J. (2008) Direct submission GenBank.