ISBpl1
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABQC02000016 | ND | Bacteroides plebeius | Bacteroides plebeius DSM 17135 |
DNA section
IS Length : 1427 bp
Ends
IR Length : 13
IRL : GTCGTCCCTTAAAGTACCCTTTTCCTGCTAATAGTCAATATATTAATGGC
IRR : GTCGTCCCTTAAAAAGTGCCCATCTGCGGAATATTGTACGGAAACAGTAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTCAAGTAAA | TATTTA | ATAATTTTCA | 6 |
ATCCCCTATC | TATATA | ACAATTCTTT | 6 |
DNA sequence
GTCGTCCCTTAAAGTACCCTTTTCCTGCTAATAGTCAATATATTAATGGCTAAATTTCTTTGATATATCTGCAAGTTTTTGTACCTTTATGGTTGAAAAC
TTGCAGATAATATGATAAAAACCACCTTGTCCCAGCCCTCTCTGTTCAGTTCGTTGGCAGACCAACTGAACCAAAAGCATCCCTTGTATCTGCTTGCCGA
CAAGATTGACTGGCACCGTTTCGAGGAAGCTTTCTCTCCGCTGTATTGTGCAGACAACGGGCGTCCTGCCAAACCCGTCCGTTTGATGTGCGGACTTCTG
ATTCTTAAACATGTCCGTAACCTTTCCGATGAATCGGTTGTTGAGCAATGGAGTGAGAATGCTTATTACCAGTACTTTTGCGGTATGTTGGAGTTCACGC
CATCCTATCCCTGCAATGCAAGCGAACTGGTACACTTCCGCAAGCGTATCGGTGAGAAGGGTTTGGAACTGATTCTGTCAGAAAGCATACGTGTCAATCA
ACAGGATGATGACCGGGACCATCACGACACGGCCTTCATCGACTCCACGGTACAGGAAAAGAACGTGACTTATCCCACGGATGCCAAGTTGCATAAAAAG
ATAATCCGCAAAGTGTTGTCCATCGTAAAATCCTTAGACCTTCCTTTGCGCCAGAGCTACACTTTCACCCTTAAGAAGATTTACCGTGACCAACGCTTCC
GTAACCATCCGAAAAACCGCAGCAAGGCACTGAAGGCCGACAGACGGCTACGCACCATTGCGGGAAGGCTTGTCAGGGAACTGAAGCGTAACCTGAGTGG
AAACCATGACTATGACTCTCAGCTCGCCCTCTTTGAGCGGGTTCTTTCACAGAAACGTAACTCTCCGGGGAAAATCTATTCCCTGCATGAGCCGGAAGTA
CAGTGTATCAGCAAGGGGAAGGAACATAAGAAGTACGAATTTGGGAACAAGGTCTCAATCATCCGCTCAATTACCGGAATTATCCTGGGGGCCAAGTCCT
TCCGGAACGAATATGACGGACACACCATTGAAGACTCCCTCTTACAGGTGAAACGAATTACCGGAAAGAGAATCAGGAGACTGGCAGGAGACAGGGGTTA
CAGGGGAAAGAAAGAAGTTTGCGGCACTCAAATATTGATACCTGATGTTCCAAACCGGAAAGACAGTTATTATACCCGCAGGAAGAAACATAAGCTTTTC
TGCAAGCGTGCGGGAATAGAGCCGACTATCGGGCATTTGAAATCAGATTTTCGTTTAGGACGCAACTTTTATAAAGGGGTATTCGGTGATACTGTCAATC
TGCTTTTAGCTGCCGCCGCATACAACTTCAAAAGAGCCATGAGGACTCTTTTGTGGCTTATTGAAAAAATCTGCGGGATACTGTTTCCGTACAATATTCC
GCAGATGGGCACTTTTTAAGGGACGAC
TTGCAGATAATATGATAAAAACCACCTTGTCCCAGCCCTCTCTGTTCAGTTCGTTGGCAGACCAACTGAACCAAAAGCATCCCTTGTATCTGCTTGCCGA
CAAGATTGACTGGCACCGTTTCGAGGAAGCTTTCTCTCCGCTGTATTGTGCAGACAACGGGCGTCCTGCCAAACCCGTCCGTTTGATGTGCGGACTTCTG
ATTCTTAAACATGTCCGTAACCTTTCCGATGAATCGGTTGTTGAGCAATGGAGTGAGAATGCTTATTACCAGTACTTTTGCGGTATGTTGGAGTTCACGC
CATCCTATCCCTGCAATGCAAGCGAACTGGTACACTTCCGCAAGCGTATCGGTGAGAAGGGTTTGGAACTGATTCTGTCAGAAAGCATACGTGTCAATCA
ACAGGATGATGACCGGGACCATCACGACACGGCCTTCATCGACTCCACGGTACAGGAAAAGAACGTGACTTATCCCACGGATGCCAAGTTGCATAAAAAG
ATAATCCGCAAAGTGTTGTCCATCGTAAAATCCTTAGACCTTCCTTTGCGCCAGAGCTACACTTTCACCCTTAAGAAGATTTACCGTGACCAACGCTTCC
GTAACCATCCGAAAAACCGCAGCAAGGCACTGAAGGCCGACAGACGGCTACGCACCATTGCGGGAAGGCTTGTCAGGGAACTGAAGCGTAACCTGAGTGG
AAACCATGACTATGACTCTCAGCTCGCCCTCTTTGAGCGGGTTCTTTCACAGAAACGTAACTCTCCGGGGAAAATCTATTCCCTGCATGAGCCGGAAGTA
CAGTGTATCAGCAAGGGGAAGGAACATAAGAAGTACGAATTTGGGAACAAGGTCTCAATCATCCGCTCAATTACCGGAATTATCCTGGGGGCCAAGTCCT
TCCGGAACGAATATGACGGACACACCATTGAAGACTCCCTCTTACAGGTGAAACGAATTACCGGAAAGAGAATCAGGAGACTGGCAGGAGACAGGGGTTA
CAGGGGAAAGAAAGAAGTTTGCGGCACTCAAATATTGATACCTGATGTTCCAAACCGGAAAGACAGTTATTATACCCGCAGGAAGAAACATAAGCTTTTC
TGCAAGCGTGCGGGAATAGAGCCGACTATCGGGCATTTGAAATCAGATTTTCGTTTAGGACGCAACTTTTATAAAGGGGTATTCGGTGATACTGTCAATC
TGCTTTTAGCTGCCGCCGCATACAACTTCAAAAGAGCCATGAGGACTCTTTTGTGGCTTATTGAAAAAATCTGCGGGATACTGTTTCCGTACAATATTCC
GCAGATGGGCACTTTTTAAGGGACGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1308 bp | 435 aa | 112 | 1419 | + | No |
Chemistry : DDE
ORF sequence :
MIKTTLSQPSLFSSLADQLNQKHPLYLLADKIDWHRFEEAFSPLYCADNGRPAKPVRLMCGLLILKHVRNLSDESVVEQWSENAYYQYFCGMLEFTPSYP
CNASELVHFRKRIGEKGLELILSESIRVNQQDDDRDHHDTAFIDSTVQEKNVTYPTDAKLHKKIIRKVLSIVKSLDLPLRQSYTFTLKKIYRDQRFRNHP
KNRSKALKADRRLRTIAGRLVRELKRNLSGNHDYDSQLALFERVLSQKRNSPGKIYSLHEPEVQCISKGKEHKKYEFGNKVSIIRSITGIILGAKSFRNE
YDGHTIEDSLLQVKRITGKRIRRLAGDRGYRGKKEVCGTQILIPDVPNRKDSYYTRRKKHKLFCKRAGIEPTIGHLKSDFRLGRNFYKGVFGDTVNLLLA
AAAYNFKRAMRTLLWLIEKICGILFPYNIPQMGTF
CNASELVHFRKRIGEKGLELILSESIRVNQQDDDRDHHDTAFIDSTVQEKNVTYPTDAKLHKKIIRKVLSIVKSLDLPLRQSYTFTLKKIYRDQRFRNHP
KNRSKALKADRRLRTIAGRLVRELKRNLSGNHDYDSQLALFERVLSQKRNSPGKIYSLHEPEVQCISKGKEHKKYEFGNKVSIIRSITGIILGAKSFRNE
YDGHTIEDSLLQVKRITGKRIRRLAGDRGYRGKKEVCGTQILIPDVPNRKDSYYTRRKKHKLFCKRAGIEPTIGHLKSDFRLGRNFYKGVFGDTVNLLLA
AAAYNFKRAMRTLLWLIEKICGILFPYNIPQMGTF
Blast result :
Comments
ISBpl1 is 84% aa similar to ISPg7.
References
1] ISfinder annotation (2010)
2] Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D. and Gordon,J. (2008) Direct submission GenBank.
2] Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D. and Gordon,J. (2008) Direct submission GenBank.