ISCap1
- Family ISAzo13
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_013194 | ND | Candidatus Accumulibacter | Candidatus Accumulibacter phosphatis clade IIA UW-1 |
DNA section
IS Length : 1311 bp
Ends
IR Length : 24/26
IRL : GGCGTTAAGCAAAAATAACTTGAACATTTGTGGTGATTGGCCTATGGTTT
IRR : GGCGGCAAGCAAAAATAACTTGAACAATACGAGTTATTCGTCATTTTTCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ACTCCGCGAG | TAA | GTGCCTTCGG | 3 |
| GACAACGTAA | CAAGTGTCGT | 0 |
DNA sequence
GGCGTTAAGCAAAAATAACTTGAACATTTGTGGTGATTGGCCTATGGTTTCAGCATGGAGCAAGAGCTAGCCATAGAAGCCAAGTATCAAGCGCTGTGCG
GCAGGCTGGATGAGGCCACGCTTCGCCTTTGGGCGGCGACGGAGGCACGAAGCCTGGGGCGTGGTGGCGTCACCTTGGTCGCCAAGGCGACTGGCCTGTC
GCGCACGACGATTCATGCGGGTTTGAGTGAACTGAACGCACCGGTTTCGGCTGGGGAGCAAGGCGTGCCACTCCGAGCGCGAGCGGTAGGCGGTGGGCGA
AAGAAGTTGATTGACAAGGATGCCAGCTTGCTGAGCGATGTCGACGCCTTGGTGGAGCCGACAACGCGTGGTGATCCGATGTCGCCGCTGCGCTGGACCT
GCAAGAGCACCTATCGCCTGGCTGAAGAACTGAGGCGACAGGGGCATACGGTCAGCCAGCGGAGCCTTTGTGATTTGCTGAGTTTGGCAGGCTTCAGTCT
GCAATCGACGCGAAAGACGCGAGAGGGTGGGCAGCATGAGGACCGCGATGCCCAGTTCGGCCACATCGCCCGTACTGTTGCGGAGTATCAGGCGGCAGGC
GATCCGGTGATTTCGGTGGACACCAAGAAGAAAGAGTTAATCGGCGACTTCAAGAATGGCGGCAAAGAGTGGCAACCCAAGGGAAAGCCAGAAGAAGTCC
GGGTTCATGACTTCATTGACCGTGAACTCGGCAAGGTCGCGCCCTACGGGGTTTATGACTTGACCACCAATACGGGCTGGGTCAGTGTCGGCATCGACCA
CGATACCGCCGAATTTGCCGTCGAAAGCATCCGGCGCTGGTGGCGTGAAATGGGACAGGTGACCTACCCGAATGCTCGCCGTCTGCTGATCACCGCGGAC
GGCGGTGGCAGCAACGGTTATCGTGTGCGTCTATGGCGAAGGGAGTTGCAAAAGCTGGCGGATGAACTTCGCCTGACGGTTCAGGTTTGTCATCTCCCGC
CTGGAACCAGCAAATGGAACAAGATCGAGCATCGCATGTTTTGCCACATCACCGCGAATTGGCGCGGACGACCGCTAGTCAGTCGACAGGTGGTGGTGAA
CCTGATCGGTAACACGACAACCGAGACAGGCTTGCGAATCCAGGCTGCGATCGATGAAAACGCCTATACGTCGGGAATCAAGGTGTCCGACGAAGAACTT
GCTTCGCTTGCCATCGAGCGCGACGCGTTTCATGGCGAATGGAACTACCGGTTGATACCCCGGAAAAATGACGAATAACTCGTATTGTTCAAGTTATTTT
TGCTTGCCGCC
GCAGGCTGGATGAGGCCACGCTTCGCCTTTGGGCGGCGACGGAGGCACGAAGCCTGGGGCGTGGTGGCGTCACCTTGGTCGCCAAGGCGACTGGCCTGTC
GCGCACGACGATTCATGCGGGTTTGAGTGAACTGAACGCACCGGTTTCGGCTGGGGAGCAAGGCGTGCCACTCCGAGCGCGAGCGGTAGGCGGTGGGCGA
AAGAAGTTGATTGACAAGGATGCCAGCTTGCTGAGCGATGTCGACGCCTTGGTGGAGCCGACAACGCGTGGTGATCCGATGTCGCCGCTGCGCTGGACCT
GCAAGAGCACCTATCGCCTGGCTGAAGAACTGAGGCGACAGGGGCATACGGTCAGCCAGCGGAGCCTTTGTGATTTGCTGAGTTTGGCAGGCTTCAGTCT
GCAATCGACGCGAAAGACGCGAGAGGGTGGGCAGCATGAGGACCGCGATGCCCAGTTCGGCCACATCGCCCGTACTGTTGCGGAGTATCAGGCGGCAGGC
GATCCGGTGATTTCGGTGGACACCAAGAAGAAAGAGTTAATCGGCGACTTCAAGAATGGCGGCAAAGAGTGGCAACCCAAGGGAAAGCCAGAAGAAGTCC
GGGTTCATGACTTCATTGACCGTGAACTCGGCAAGGTCGCGCCCTACGGGGTTTATGACTTGACCACCAATACGGGCTGGGTCAGTGTCGGCATCGACCA
CGATACCGCCGAATTTGCCGTCGAAAGCATCCGGCGCTGGTGGCGTGAAATGGGACAGGTGACCTACCCGAATGCTCGCCGTCTGCTGATCACCGCGGAC
GGCGGTGGCAGCAACGGTTATCGTGTGCGTCTATGGCGAAGGGAGTTGCAAAAGCTGGCGGATGAACTTCGCCTGACGGTTCAGGTTTGTCATCTCCCGC
CTGGAACCAGCAAATGGAACAAGATCGAGCATCGCATGTTTTGCCACATCACCGCGAATTGGCGCGGACGACCGCTAGTCAGTCGACAGGTGGTGGTGAA
CCTGATCGGTAACACGACAACCGAGACAGGCTTGCGAATCCAGGCTGCGATCGATGAAAACGCCTATACGTCGGGAATCAAGGTGTCCGACGAAGAACTT
GCTTCGCTTGCCATCGAGCGCGACGCGTTTCATGGCGAATGGAACTACCGGTTGATACCCCGGAAAAATGACGAATAACTCGTATTGTTCAAGTTATTTT
TGCTTGCCGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1224 bp | 407 aa | 55 | 1278 | + | No |
Chemistry : Unknow
ORF sequence :
MEQELAIEAKYQALCGRLDEATLRLWAATEARSLGRGGVTLVAKATGLSRTTIHAGLSELNAPVSAGEQGVPLRARAVGGGRKKLIDKDASLLSDVDALV
EPTTRGDPMSPLRWTCKSTYRLAEELRRQGHTVSQRSLCDLLSLAGFSLQSTRKTREGGQHEDRDAQFGHIARTVAEYQAAGDPVISVDTKKKELIGDFK
NGGKEWQPKGKPEEVRVHDFIDRELGKVAPYGVYDLTTNTGWVSVGIDHDTAEFAVESIRRWWREMGQVTYPNARRLLITADGGGSNGYRVRLWRRELQK
LADELRLTVQVCHLPPGTSKWNKIEHRMFCHITANWRGRPLVSRQVVVNLIGNTTTETGLRIQAAIDENAYTSGIKVSDEELASLAIERDAFHGEWNYRL
IPRKNDE
EPTTRGDPMSPLRWTCKSTYRLAEELRRQGHTVSQRSLCDLLSLAGFSLQSTRKTREGGQHEDRDAQFGHIARTVAEYQAAGDPVISVDTKKKELIGDFK
NGGKEWQPKGKPEEVRVHDFIDRELGKVAPYGVYDLTTNTGWVSVGIDHDTAEFAVESIRRWWREMGQVTYPNARRLLITADGGGSNGYRVRLWRRELQK
LADELRLTVQVCHLPPGTSKWNKIEHRMFCHITANWRGRPLVSRQVVVNLIGNTTTETGLRIQAAIDENAYTSGIKVSDEELASLAIERDAFHGEWNYRL
IPRKNDE
Blast result :
Comments
ISCap1 is 74% aa similar to ISAzo13.
References
1] ISfinder annotation (2009)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Barry,K., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., McMahon,K.D. and Hugenholtz,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Barry,K., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., McMahon,K.D. and Hugenholtz,P. (2009) Direct submission GenBank.