ISStau6
- Family ISAzo13
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAMD01000019 | ND | Stigmatella aurantiaca | Stigmatella aurantiaca DW4/3-1 |
DNA section
IS Length : 1304 bp
Ends
IR Length : 22/25
IRL : GAGCCCTGCCGGAAATTAGTTAGCCACTTGAAAGGAATGGAGCAGGCAGC
IRR : GGGCCCTGCCGGAACTTAGTTGGCCGAATTCGGCTCTATTCGGTAGTTCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATTAATTAATTAATT | AAATTAAACTTGGCGTGCAA | 0 |
DNA sequence
GAGCCCTGCCGGAAATTAGTTAGCCACTTGAAAGGAATGGAGCAGGCAGCCAGGAGTGTTGTCCGAGCATGAGAGCAGCGGAGGCAGAGCAGGCTGTGGC
GGAGCGGTATGAGGCGCTCCGGAGCGTCATGGACGAGCGCGTGAGGCGCTACTGGGCAGGTGCCGAGGCGCTGGCTCTGGGGCGAGGTGGTGTGAGTGTG
GTGGCGAGGGCGACGGGCCTCTCGCGCATGACGGTGCGCGCTGGGCAGGAGCAAGCCCGTGGAAAGAAGCCTCCGGAGGAGTTGGTGCGCGTGCGCCGCC
GCGGGGCAGGCCGTCCGCGTGCGGAGGCCGCCCAGCCGGGGCTCATGGAGGCGTTGGAGTCGCTGGTGGATCCAGCGACGCGAGGGGACCCGGAGTCGCC
GCTGCGCTGGACGCACAAGAGTACGGTGCAACTCGCAGGCGAGCTGGAGCGGCTCGGCTACAAGGCAAGACGACAGAAGGTGGGAGAGTTGCTGAGGGGA
CTGGGCTACTCCTTGCAAGCGGTGCACAAGACGCTGGAGGGCGAGTCGCACTCGGACAGGAATGCCCAGTTCGAGCACATCAATGCCGAGGTGAAGGCCT
TCCAGAAGCGCGGGCAGCCGGTCATCTCGGTGGACACGAAAAAGAAGGAGTGGGTGGGGGAATTCAAGAATGGGGGCCGGGAGTGGCAGCCGAAGGGCGC
GCCGGTGCTGGCCCTTACCCACGACTTCCCGGACACTGCGGAGGGAAAGGTCATCCCGTACGGGGTGTACGACGTGGGCACCAACAGCGCGTGGGTATCG
GTGGGCGTGGACCACGACACGCCCGTCTTCGCCGTCAACAGCATGGCTGCCTGGTGGAGCAAGCTGGGAAAGGCGTGCTATCCCGAGGCGAAGGAGTTGT
TGGTGATGGCGGACTCGGGCGGCAGCAACAGCGCCAAGAGCCGGGTGTGGAAGGCCCAATTGCAGAAGTTGGCGGATGCCACCGGACTGTCCATCAGCGT
GTGTCACTTTCCTCCCGGTACCAGCAAGTGGAACAAGGTGGAGCACCGCCTCTTCAGCCACCTCAGCATCAACTGGCGAGGACGCCCGCTGGAGGACTAC
GAGACGGTGGTGCAGCTTATTGGCGCGACGACGACAAGGAAGGGGCTGAAGGTGAAGGCGCGCCTGGACAAGCGTCGCTACAGCACCGGCCTGCGCGTCT
CCCGGGCGGAAATGAAGAAGCTCCACCTCGTCCGCTCAGACGTCCATGGCGAGTGGAACTACCGAATAGAGCCGAATTCGGCCAACTAAGTTCCGGCAGG
GCCC
GGAGCGGTATGAGGCGCTCCGGAGCGTCATGGACGAGCGCGTGAGGCGCTACTGGGCAGGTGCCGAGGCGCTGGCTCTGGGGCGAGGTGGTGTGAGTGTG
GTGGCGAGGGCGACGGGCCTCTCGCGCATGACGGTGCGCGCTGGGCAGGAGCAAGCCCGTGGAAAGAAGCCTCCGGAGGAGTTGGTGCGCGTGCGCCGCC
GCGGGGCAGGCCGTCCGCGTGCGGAGGCCGCCCAGCCGGGGCTCATGGAGGCGTTGGAGTCGCTGGTGGATCCAGCGACGCGAGGGGACCCGGAGTCGCC
GCTGCGCTGGACGCACAAGAGTACGGTGCAACTCGCAGGCGAGCTGGAGCGGCTCGGCTACAAGGCAAGACGACAGAAGGTGGGAGAGTTGCTGAGGGGA
CTGGGCTACTCCTTGCAAGCGGTGCACAAGACGCTGGAGGGCGAGTCGCACTCGGACAGGAATGCCCAGTTCGAGCACATCAATGCCGAGGTGAAGGCCT
TCCAGAAGCGCGGGCAGCCGGTCATCTCGGTGGACACGAAAAAGAAGGAGTGGGTGGGGGAATTCAAGAATGGGGGCCGGGAGTGGCAGCCGAAGGGCGC
GCCGGTGCTGGCCCTTACCCACGACTTCCCGGACACTGCGGAGGGAAAGGTCATCCCGTACGGGGTGTACGACGTGGGCACCAACAGCGCGTGGGTATCG
GTGGGCGTGGACCACGACACGCCCGTCTTCGCCGTCAACAGCATGGCTGCCTGGTGGAGCAAGCTGGGAAAGGCGTGCTATCCCGAGGCGAAGGAGTTGT
TGGTGATGGCGGACTCGGGCGGCAGCAACAGCGCCAAGAGCCGGGTGTGGAAGGCCCAATTGCAGAAGTTGGCGGATGCCACCGGACTGTCCATCAGCGT
GTGTCACTTTCCTCCCGGTACCAGCAAGTGGAACAAGGTGGAGCACCGCCTCTTCAGCCACCTCAGCATCAACTGGCGAGGACGCCCGCTGGAGGACTAC
GAGACGGTGGTGCAGCTTATTGGCGCGACGACGACAAGGAAGGGGCTGAAGGTGAAGGCGCGCCTGGACAAGCGTCGCTACAGCACCGGCCTGCGCGTCT
CCCGGGCGGAAATGAAGAAGCTCCACCTCGTCCGCTCAGACGTCCATGGCGAGTGGAACTACCGAATAGAGCCGAATTCGGCCAACTAAGTTCCGGCAGG
GCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1221 bp | 406 aa | 69 | 1289 | + | No |
Chemistry : Unknow
ORF sequence :
MRAAEAEQAVAERYEALRSVMDERVRRYWAGAEALALGRGGVSVVARATGLSRMTVRAGQEQARGKKPPEELVRVRRRGAGRPRAEAAQPGLMEALESLV
DPATRGDPESPLRWTHKSTVQLAGELERLGYKARRQKVGELLRGLGYSLQAVHKTLEGESHSDRNAQFEHINAEVKAFQKRGQPVISVDTKKKEWVGEFK
NGGREWQPKGAPVLALTHDFPDTAEGKVIPYGVYDVGTNSAWVSVGVDHDTPVFAVNSMAAWWSKLGKACYPEAKELLVMADSGGSNSAKSRVWKAQLQK
LADATGLSISVCHFPPGTSKWNKVEHRLFSHLSINWRGRPLEDYETVVQLIGATTTRKGLKVKARLDKRRYSTGLRVSRAEMKKLHLVRSDVHGEWNYRI
EPNSAN
DPATRGDPESPLRWTHKSTVQLAGELERLGYKARRQKVGELLRGLGYSLQAVHKTLEGESHSDRNAQFEHINAEVKAFQKRGQPVISVDTKKKEWVGEFK
NGGREWQPKGAPVLALTHDFPDTAEGKVIPYGVYDVGTNSAWVSVGVDHDTPVFAVNSMAAWWSKLGKACYPEAKELLVMADSGGSNSAKSRVWKAQLQK
LADATGLSISVCHFPPGTSKWNKVEHRLFSHLSINWRGRPLEDYETVVQLIGATTTRKGLKVKARLDKRRYSTGLRVSRAEMKKLHLVRSDVHGEWNYRI
EPNSAN
Blast result :
Comments
ISStau6 is 65% aa similar to ISArch16.
References
1] Isfinder annotation (2008)
2] Nierman,W.C. (2006) Direct submission GenBank.
2] Nierman,W.C. (2006) Direct submission GenBank.