ISStau6

  • Family ISAzo13
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAMD01000019 ND Stigmatella aurantiaca
Stigmatella aurantiaca DW4/3-1
DNA section
IS Length : 1304 bp

Ends


IR Length : 22/25

IRL : GAGCCCTGCCGGAAATTAGTTAGCCACTTGAAAGGAATGGAGCAGGCAGC
IRR : GGGCCCTGCCGGAACTTAGTTGGCCGAATTCGGCTCTATTCGGTAGTTCC

Insertion site


Left flankDirect repeatRight flankDR Length
AATTAATTAATTAATTAAATTAAACTTGGCGTGCAA0

DNA sequence

GAGCCCTGCCGGAAATTAGTTAGCCACTTGAAAGGAATGGAGCAGGCAGCCAGGAGTGTTGTCCGAGCATGAGAGCAGCGGAGGCAGAGCAGGCTGTGGC
GGAGCGGTATGAGGCGCTCCGGAGCGTCATGGACGAGCGCGTGAGGCGCTACTGGGCAGGTGCCGAGGCGCTGGCTCTGGGGCGAGGTGGTGTGAGTGTG
GTGGCGAGGGCGACGGGCCTCTCGCGCATGACGGTGCGCGCTGGGCAGGAGCAAGCCCGTGGAAAGAAGCCTCCGGAGGAGTTGGTGCGCGTGCGCCGCC
GCGGGGCAGGCCGTCCGCGTGCGGAGGCCGCCCAGCCGGGGCTCATGGAGGCGTTGGAGTCGCTGGTGGATCCAGCGACGCGAGGGGACCCGGAGTCGCC
GCTGCGCTGGACGCACAAGAGTACGGTGCAACTCGCAGGCGAGCTGGAGCGGCTCGGCTACAAGGCAAGACGACAGAAGGTGGGAGAGTTGCTGAGGGGA
CTGGGCTACTCCTTGCAAGCGGTGCACAAGACGCTGGAGGGCGAGTCGCACTCGGACAGGAATGCCCAGTTCGAGCACATCAATGCCGAGGTGAAGGCCT
TCCAGAAGCGCGGGCAGCCGGTCATCTCGGTGGACACGAAAAAGAAGGAGTGGGTGGGGGAATTCAAGAATGGGGGCCGGGAGTGGCAGCCGAAGGGCGC
GCCGGTGCTGGCCCTTACCCACGACTTCCCGGACACTGCGGAGGGAAAGGTCATCCCGTACGGGGTGTACGACGTGGGCACCAACAGCGCGTGGGTATCG
GTGGGCGTGGACCACGACACGCCCGTCTTCGCCGTCAACAGCATGGCTGCCTGGTGGAGCAAGCTGGGAAAGGCGTGCTATCCCGAGGCGAAGGAGTTGT
TGGTGATGGCGGACTCGGGCGGCAGCAACAGCGCCAAGAGCCGGGTGTGGAAGGCCCAATTGCAGAAGTTGGCGGATGCCACCGGACTGTCCATCAGCGT
GTGTCACTTTCCTCCCGGTACCAGCAAGTGGAACAAGGTGGAGCACCGCCTCTTCAGCCACCTCAGCATCAACTGGCGAGGACGCCCGCTGGAGGACTAC
GAGACGGTGGTGCAGCTTATTGGCGCGACGACGACAAGGAAGGGGCTGAAGGTGAAGGCGCGCCTGGACAAGCGTCGCTACAGCACCGGCCTGCGCGTCT
CCCGGGCGGAAATGAAGAAGCTCCACCTCGTCCGCTCAGACGTCCATGGCGAGTGGAACTACCGAATAGAGCCGAATTCGGCCAACTAAGTTCCGGCAGG
GCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1221 bp406 aa691289+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MRAAEAEQAVAERYEALRSVMDERVRRYWAGAEALALGRGGVSVVARATGLSRMTVRAGQEQARGKKPPEELVRVRRRGAGRPRAEAAQPGLMEALESLV
DPATRGDPESPLRWTHKSTVQLAGELERLGYKARRQKVGELLRGLGYSLQAVHKTLEGESHSDRNAQFEHINAEVKAFQKRGQPVISVDTKKKEWVGEFK
NGGREWQPKGAPVLALTHDFPDTAEGKVIPYGVYDVGTNSAWVSVGVDHDTPVFAVNSMAAWWSKLGKACYPEAKELLVMADSGGSNSAKSRVWKAQLQK
LADATGLSISVCHFPPGTSKWNKVEHRLFSHLSINWRGRPLEDYETVVQLIGATTTRKGLKVKARLDKRRYSTGLRVSRAEMKKLHLVRSDVHGEWNYRI
EPNSAN

 

Blast result :
Comments
ISStau6 is 65% aa similar to ISArch16.
References
1] Isfinder annotation (2008)
2] Nierman,W.C. (2006) Direct submission GenBank.